Wall clock time and date at job start Fri Apr 10 2020 17:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32756 * 34.63611 * 10 9 7 12 12 C 1.53036 * 109.32879 * 154.10811 * 10 9 7 13 13 C 1.53965 * 108.83431 * 175.67660 * 12 10 9 14 14 H 1.08999 * 113.67342 * 168.55863 * 13 12 10 15 15 C 1.55430 * 106.41231 * 293.82740 * 13 12 10 16 16 C 1.55168 * 100.35448 * 73.37349 * 15 13 12 17 17 H 1.09001 * 112.48452 * 163.34450 * 16 15 13 18 18 C 1.52986 * 109.32612 * 274.99753 * 10 9 7 19 19 N 1.47791 * 104.25830 * 40.54584 * 16 15 13 20 20 C 1.34776 * 125.85565 * 153.50200 * 19 16 15 21 21 O 1.21273 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.50702 * 119.99577 * 179.97438 * 20 19 16 23 23 C 1.50706 * 109.46999 * 180.02562 * 22 20 19 24 24 C 1.41376 * 128.00687 * 269.68793 * 23 22 20 25 25 N 1.30175 * 106.39270 * 179.89142 * 24 23 22 26 26 O 1.20914 * 111.60638 * 0.38861 * 25 24 23 27 27 C 1.34041 * 111.56720 * 359.74341 * 26 25 24 28 28 C 1.47085 * 108.28511 * 333.54306 * 19 16 15 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.57350 * 295.48432 * 12 10 9 32 32 H 1.09003 * 109.57415 * 55.87206 * 12 10 9 33 33 H 1.08990 * 111.23743 * 315.59334 * 15 13 12 34 34 H 1.09006 * 111.27342 * 191.16150 * 15 13 12 35 35 H 1.09004 * 109.52998 * 304.52113 * 18 10 9 36 36 H 1.08998 * 109.53616 * 64.67290 * 18 10 9 37 37 H 1.08990 * 109.47631 * 300.00593 * 22 20 19 38 38 H 1.08998 * 109.47043 * 60.00673 * 22 20 19 39 39 H 1.07996 * 126.80645 * 0.02752 * 24 23 22 40 40 H 1.08002 * 126.77664 * 179.97438 * 27 26 25 41 41 H 1.09000 * 109.97259 * 241.73463 * 28 19 16 42 42 H 1.08997 * 110.00611 * 120.47415 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9708 -3.5464 0.5837 12 6 1.1856 -4.7453 0.6278 13 6 1.9213 -6.0938 0.5238 14 1 1.4671 -6.8871 1.1175 15 6 2.0036 -6.4334 -0.9907 16 6 3.0864 -5.4193 -1.4455 17 1 3.5119 -5.6714 -2.4168 18 6 2.4211 -4.0317 -1.4397 19 7 4.0840 -5.4386 -0.3552 20 6 5.3936 -5.1448 -0.4781 21 8 5.8455 -4.8297 -1.5585 22 6 6.2960 -5.2066 0.7273 23 6 7.6996 -4.8353 0.3235 24 6 8.7322 -5.6913 -0.1235 25 7 9.7632 -4.9320 -0.3579 26 8 9.5243 -3.7708 -0.1200 27 6 8.2657 -3.6048 0.3103 28 6 3.4026 -5.8344 0.8868 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.0050 -4.5077 1.6761 32 1 0.2360 -4.8052 0.0960 33 1 1.0528 -6.2461 -1.4896 34 1 2.3335 -7.4604 -1.1484 35 1 1.5174 -4.0583 -2.0486 36 1 3.1124 -3.2931 -1.8454 37 1 5.9393 -4.5084 1.4844 38 1 6.2901 -6.2178 1.1340 39 1 8.6760 -6.7626 -0.2481 40 1 7.7960 -2.6739 0.5915 41 1 3.4711 -5.0318 1.6210 42 1 3.8530 -6.7433 1.2858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094983414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:17 Heat of formation + Delta-G solvation = 49.702731 kcal Electronic energy + Delta-G solvation = -25680.558305 eV Core-core repulsion = 22050.479654 eV Total energy + Delta-G solvation = -3630.078651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.99049 -40.94420 -38.47361 -35.07145 -34.65742 -32.90737 -32.18591 -31.30791 -30.80939 -28.69017 -27.67509 -25.68308 -23.53093 -23.18575 -22.58399 -21.30105 -21.22782 -19.47659 -18.82376 -17.91904 -17.68455 -17.40371 -17.08905 -16.03974 -15.40923 -15.20219 -14.68205 -14.44120 -14.23412 -13.68321 -13.52680 -13.31937 -13.21888 -12.87954 -12.80473 -12.49217 -12.31584 -12.20476 -11.81253 -11.76311 -11.34286 -11.13013 -10.88559 -10.78091 -10.45069 -10.41092 -10.17612 -9.96952 -9.89958 -9.84687 -9.41041 -9.16077 -8.93580 -8.51185 -7.06296 -6.12329 -3.12390 1.43147 2.11767 2.68613 3.03206 3.22340 3.49918 3.53735 3.70748 4.17149 4.38484 4.44775 4.56034 4.63198 4.66454 4.80335 4.90539 5.02128 5.17539 5.22509 5.25344 5.35266 5.45663 5.50314 5.53289 5.58339 5.62206 5.70400 5.79371 5.83432 5.88699 5.91091 6.01464 6.10785 6.19311 6.31615 6.42979 6.56185 6.86836 6.96616 7.60047 7.78644 8.15514 8.22899 8.73357 9.20267 10.06532 10.21124 11.36029 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004897 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.374807 B = 5716.954895 C = 7635.820092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.044 4.044 3 Si 1.076 2.924 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.328 4.328 8 H 0.061 0.939 9 N -0.736 5.736 10 C 0.186 3.814 11 H 0.049 0.951 12 C -0.123 4.123 13 C -0.097 4.097 14 H 0.099 0.901 15 C -0.128 4.128 16 C 0.135 3.865 17 H 0.091 0.909 18 C -0.143 4.143 19 N -0.607 5.607 20 C 0.529 3.471 21 O -0.535 6.535 22 C -0.060 4.060 23 C -0.186 4.186 24 C 0.004 3.996 25 N -0.369 5.369 26 O 0.096 5.904 27 C -0.039 4.039 28 C 0.102 3.898 29 H 0.254 0.746 30 H 0.366 0.634 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.187 0.813 40 H 0.217 0.783 41 H 0.076 0.924 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -16.228 4.271 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.241 4.241 3 Si 0.907 3.093 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.079 0.921 9 N -0.378 5.378 10 C 0.076 3.924 11 H 0.067 0.933 12 C -0.162 4.162 13 C -0.116 4.116 14 H 0.117 0.883 15 C -0.166 4.166 16 C 0.032 3.968 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.342 5.342 20 C 0.317 3.683 21 O -0.412 6.412 22 C -0.100 4.100 23 C -0.190 4.190 24 C -0.176 4.176 25 N -0.074 5.074 26 O 0.032 5.968 27 C -0.121 4.121 28 C -0.021 4.021 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.204 0.796 40 H 0.234 0.766 41 H 0.094 0.906 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.631 -14.527 3.262 18.294 hybrid contribution -1.083 -1.758 0.199 2.074 sum 9.547 -16.284 3.461 19.192 Atomic orbital electron populations 1.70892 1.06023 1.28366 1.53671 1.25724 0.97029 1.00904 1.00473 0.83290 0.74302 0.75784 0.75897 1.20983 1.22282 1.22253 1.19990 0.91825 0.85793 1.48304 0.92053 1.42447 1.04719 1.00809 1.89819 1.20170 0.94187 0.85468 0.92592 0.93267 1.22150 0.99109 0.93420 1.01473 1.22601 0.94168 0.98353 0.96503 0.88286 1.23049 0.99313 0.98382 0.95812 1.22306 0.87147 0.96571 0.90822 0.89059 1.22801 1.00026 0.94447 1.01188 1.48577 1.07147 1.67708 1.10734 1.20044 0.80882 0.77072 0.90255 1.90727 1.74288 1.47419 1.28722 1.19868 0.88520 1.04612 0.96998 1.20727 0.97205 0.93104 1.07990 1.24859 0.89164 1.02151 1.01379 1.73834 1.24647 0.90084 1.18797 1.84799 1.28516 1.22201 1.61313 1.25861 0.84872 1.00910 1.00425 1.22236 0.92974 0.99696 0.87211 0.93432 0.80115 0.91627 0.91770 0.89612 0.91318 0.91801 0.91854 0.87348 0.87647 0.79619 0.76628 0.90596 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.86 13.70 55.49 0.76 -28.10 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.90 29.92 -169.99 -5.09 20.82 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.33 -9.08 9.92 -15.06 -0.15 -9.23 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.74 -17.79 5.10 -53.42 -0.27 -18.07 16 10 C 0.19 3.46 2.39 -67.92 -0.16 3.29 16 11 H 0.05 0.97 5.88 -51.93 -0.31 0.66 16 12 C -0.12 -1.75 4.96 -26.21 -0.13 -1.88 16 13 C -0.10 -1.01 4.33 -87.93 -0.38 -1.39 16 14 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.13 -1.38 6.18 -24.29 -0.15 -1.53 16 16 C 0.13 1.91 3.97 -65.62 -0.26 1.65 16 17 H 0.09 1.36 8.04 -51.93 -0.42 0.94 16 18 C -0.14 -2.57 5.29 -26.28 -0.14 -2.71 16 19 N -0.61 -8.02 2.36 -161.81 -0.38 -8.41 16 20 C 0.53 7.58 7.85 -10.98 -0.09 7.49 16 21 O -0.54 -9.98 16.31 5.56 0.09 -9.89 16 22 C -0.06 -0.61 5.49 -29.03 -0.16 -0.76 16 23 C -0.19 -2.16 4.82 -104.42 -0.50 -2.66 16 24 C 0.00 0.04 12.16 -17.06 -0.21 -0.16 16 25 N -0.37 -5.06 12.07 30.35 0.37 -4.69 16 26 O 0.10 1.24 11.20 17.18 0.19 1.43 16 27 C -0.04 -0.44 12.26 29.74 0.36 -0.08 16 28 C 0.10 1.05 5.23 -2.82 -0.01 1.04 16 29 H 0.25 7.62 6.77 -40.82 -0.28 7.34 16 30 H 0.37 9.12 6.63 -40.82 -0.27 8.85 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 33 H 0.09 0.92 7.74 -51.93 -0.40 0.52 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.15 8.00 -51.93 -0.42 0.74 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.22 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.08 0.83 6.77 -51.93 -0.35 0.48 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -35.31 341.08 -7.13 -42.44 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.86 Total: 7.62 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.08 Total: -8.29 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.47 Total: -59.26 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.46 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.31 -7.13 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094983414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.143 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds