Wall clock time and date at job start Fri Apr 10 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32756 * 34.63611 * 10 9 7 12 12 C 1.53036 * 109.32879 * 154.10811 * 10 9 7 13 13 C 1.53965 * 108.83431 * 175.67660 * 12 10 9 14 14 H 1.08999 * 113.67342 * 168.55863 * 13 12 10 15 15 C 1.55430 * 106.41231 * 293.82740 * 13 12 10 16 16 C 1.55168 * 100.35448 * 73.37349 * 15 13 12 17 17 H 1.09001 * 112.48452 * 163.34450 * 16 15 13 18 18 C 1.52986 * 109.32612 * 274.99753 * 10 9 7 19 19 N 1.47791 * 104.25830 * 40.54584 * 16 15 13 20 20 C 1.34776 * 125.85565 * 153.50200 * 19 16 15 21 21 O 1.21273 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.50702 * 119.99577 * 179.97438 * 20 19 16 23 23 C 1.50706 * 109.46999 * 180.02562 * 22 20 19 24 24 C 1.41376 * 128.00687 * 269.68793 * 23 22 20 25 25 N 1.30175 * 106.39270 * 179.89142 * 24 23 22 26 26 O 1.20914 * 111.60638 * 0.38861 * 25 24 23 27 27 C 1.34041 * 111.56720 * 359.74341 * 26 25 24 28 28 C 1.47085 * 108.28511 * 333.54306 * 19 16 15 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.57350 * 295.48432 * 12 10 9 32 32 H 1.09003 * 109.57415 * 55.87206 * 12 10 9 33 33 H 1.08990 * 111.23743 * 315.59334 * 15 13 12 34 34 H 1.09006 * 111.27342 * 191.16150 * 15 13 12 35 35 H 1.09004 * 109.52998 * 304.52113 * 18 10 9 36 36 H 1.08998 * 109.53616 * 64.67290 * 18 10 9 37 37 H 1.08990 * 109.47631 * 300.00593 * 22 20 19 38 38 H 1.08998 * 109.47043 * 60.00673 * 22 20 19 39 39 H 1.07996 * 126.80645 * 0.02752 * 24 23 22 40 40 H 1.08002 * 126.77664 * 179.97438 * 27 26 25 41 41 H 1.09000 * 109.97259 * 241.73463 * 28 19 16 42 42 H 1.08997 * 110.00611 * 120.47415 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9708 -3.5464 0.5837 12 6 1.1856 -4.7453 0.6278 13 6 1.9213 -6.0938 0.5238 14 1 1.4671 -6.8871 1.1175 15 6 2.0036 -6.4334 -0.9907 16 6 3.0864 -5.4193 -1.4455 17 1 3.5119 -5.6714 -2.4168 18 6 2.4211 -4.0317 -1.4397 19 7 4.0840 -5.4386 -0.3552 20 6 5.3936 -5.1448 -0.4781 21 8 5.8455 -4.8297 -1.5585 22 6 6.2960 -5.2066 0.7273 23 6 7.6996 -4.8353 0.3235 24 6 8.7322 -5.6913 -0.1235 25 7 9.7632 -4.9320 -0.3579 26 8 9.5243 -3.7708 -0.1200 27 6 8.2657 -3.6048 0.3103 28 6 3.4026 -5.8344 0.8868 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.0050 -4.5077 1.6761 32 1 0.2360 -4.8052 0.0960 33 1 1.0528 -6.2461 -1.4896 34 1 2.3335 -7.4604 -1.1484 35 1 1.5174 -4.0583 -2.0486 36 1 3.1124 -3.2931 -1.8454 37 1 5.9393 -4.5084 1.4844 38 1 6.2901 -6.2178 1.1340 39 1 8.6760 -6.7626 -0.2481 40 1 7.7960 -2.6739 0.5915 41 1 3.4711 -5.0318 1.6210 42 1 3.8530 -6.7433 1.2858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094983414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:16 Heat of formation + Delta-G solvation = 26.048916 kcal Electronic energy + Delta-G solvation = -25681.584011 eV Core-core repulsion = 22050.479654 eV Total energy + Delta-G solvation = -3631.104357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.90444 -42.04294 -39.63644 -36.83215 -35.58025 -34.34077 -33.16666 -32.75276 -32.02132 -29.75065 -29.15014 -26.73704 -25.56366 -24.14092 -23.57744 -22.63252 -22.22276 -20.57119 -19.97535 -19.41377 -18.80787 -18.65204 -18.14440 -17.22376 -16.70199 -16.40618 -15.89732 -15.68972 -15.61428 -15.45147 -14.60494 -14.51067 -14.21683 -13.99140 -13.95845 -13.68087 -13.49378 -13.16367 -13.02760 -12.87302 -12.74392 -12.66140 -12.24107 -12.15434 -11.94980 -11.68833 -11.52369 -11.41966 -11.33420 -11.00816 -10.94082 -10.83227 -10.35110 -9.62595 -9.10715 -8.40237 -5.33370 0.53179 1.21978 1.54167 1.62509 1.63397 1.79892 2.08002 2.35497 2.67727 3.33682 3.36621 3.46428 3.51020 3.61542 3.74584 3.80388 3.99096 4.05800 4.17098 4.20112 4.25193 4.32342 4.38829 4.51909 4.54268 4.61759 4.70615 4.71303 4.76735 4.80906 4.91653 5.01706 5.08340 5.09274 5.19407 5.29161 5.35989 5.45180 5.49840 5.58020 6.49627 6.58587 7.10236 7.16615 7.24898 8.00970 8.10805 9.12005 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004897 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.374807 B = 5716.954895 C = 7635.820092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.101 4.101 3 Si 1.120 2.880 4 H -0.290 1.290 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.324 4.324 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.183 3.817 11 H 0.041 0.959 12 C -0.116 4.116 13 C -0.081 4.081 14 H 0.144 0.856 15 C -0.116 4.116 16 C 0.133 3.867 17 H 0.078 0.922 18 C -0.134 4.134 19 N -0.608 5.608 20 C 0.520 3.480 21 O -0.591 6.591 22 C -0.049 4.049 23 C -0.197 4.197 24 C 0.004 3.996 25 N -0.400 5.400 26 O 0.079 5.921 27 C -0.044 4.044 28 C 0.095 3.905 29 H 0.245 0.755 30 H 0.359 0.641 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.011 0.989 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.212 0.788 40 H 0.238 0.762 41 H 0.072 0.928 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -18.843 6.153 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.293 4.293 3 Si 0.945 3.055 4 H -0.216 1.216 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.392 5.392 10 C 0.075 3.925 11 H 0.059 0.941 12 C -0.155 4.155 13 C -0.100 4.100 14 H 0.162 0.838 15 C -0.154 4.154 16 C 0.029 3.971 17 H 0.096 0.904 18 C -0.175 4.175 19 N -0.341 5.341 20 C 0.311 3.689 21 O -0.472 6.472 22 C -0.088 4.088 23 C -0.202 4.202 24 C -0.175 4.175 25 N -0.107 5.107 26 O 0.019 5.981 27 C -0.126 4.126 28 C -0.027 4.027 29 H 0.056 0.944 30 H 0.191 0.809 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.229 0.771 40 H 0.254 0.746 41 H 0.090 0.910 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.803 -17.190 5.183 20.954 hybrid contribution -1.143 -0.971 -0.441 1.563 sum 9.660 -18.161 4.742 21.109 Atomic orbital electron populations 1.70992 1.06997 1.27927 1.56386 1.27017 0.97133 1.04285 1.00840 0.82727 0.73546 0.72231 0.77002 1.21608 1.19914 1.21381 1.20229 0.91693 0.87328 1.46306 0.92774 1.42685 1.04612 1.01957 1.89898 1.20414 0.94332 0.84857 0.92909 0.94124 1.22056 0.98487 0.94185 1.00735 1.22675 0.93796 0.96763 0.96718 0.83825 1.23025 0.97819 0.98610 0.95907 1.22199 0.88520 0.94958 0.91405 0.90362 1.22625 0.98711 0.95980 1.00204 1.48712 1.06864 1.66964 1.11525 1.20851 0.81471 0.75863 0.90760 1.90704 1.75398 1.49923 1.31134 1.19936 0.86374 1.07384 0.95120 1.21016 0.97951 0.93058 1.08154 1.25361 0.88687 1.03344 1.00058 1.73820 1.25952 0.90559 1.20363 1.84764 1.29349 1.22184 1.61841 1.26407 0.84454 1.02047 0.99642 1.22521 0.92945 1.01585 0.85643 0.94428 0.80886 0.91559 0.91996 0.89536 0.88253 0.92703 0.96986 0.85656 0.83732 0.77145 0.74584 0.91016 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.70 21.65 0.30 -60.61 16 2 C -0.10 -5.91 5.50 84.86 0.47 -5.44 16 3 Si 1.12 52.75 29.92 68.60 2.05 54.81 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.32 -18.32 9.92 84.03 0.83 -17.48 16 8 H 0.05 3.08 7.83 -2.91 -0.02 3.06 16 9 N -0.75 -37.12 5.10 -322.93 -1.65 -38.76 16 10 C 0.18 6.80 2.39 45.00 0.11 6.91 16 11 H 0.04 1.58 5.88 -2.39 -0.01 1.57 16 12 C -0.12 -3.06 4.96 30.93 0.15 -2.90 16 13 C -0.08 -1.30 4.33 -9.05 -0.04 -1.34 16 14 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 15 C -0.12 -2.08 6.18 32.17 0.20 -1.88 16 16 C 0.13 3.65 3.97 45.79 0.18 3.83 16 17 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 18 C -0.13 -4.94 5.29 30.89 0.16 -4.78 16 19 N -0.61 -14.69 2.36 -784.25 -1.85 -16.54 16 20 C 0.52 14.13 7.85 87.66 0.69 14.82 16 21 O -0.59 -22.31 16.31 -3.01 -0.05 -22.36 16 22 C -0.05 -0.84 5.49 29.10 0.16 -0.68 16 23 C -0.20 -4.27 4.82 -19.74 -0.10 -4.36 16 24 C 0.00 0.10 12.16 85.71 1.04 1.14 16 25 N -0.40 -10.85 12.07 -59.28 -0.72 -11.56 16 26 O 0.08 2.06 11.20 71.64 0.80 2.86 16 27 C -0.04 -0.97 12.26 67.17 0.82 -0.15 16 28 C 0.09 1.52 5.23 86.85 0.45 1.98 16 29 H 0.25 15.15 6.77 -92.71 -0.63 14.53 16 30 H 0.36 18.46 6.63 -92.71 -0.61 17.85 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.67 7.97 -2.39 -0.02 1.65 16 33 H 0.09 1.60 7.74 -2.39 -0.02 1.58 16 34 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 35 H 0.05 2.06 8.00 -2.38 -0.02 2.04 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.21 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.24 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.07 1.28 6.77 -2.39 -0.02 1.26 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.95 341.08 4.59 -77.36 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.57 Total: 25.15 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.14 Total: -10.34 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -3.92 Total: -127.48 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.75 Total: -19.50 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.81 kcal Total: -81.95 4.59 -77.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094983414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.409 kcal (2) G-P(sol) polarization free energy of solvation -81.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds