Wall clock time and date at job start Fri Apr 10 2020 17:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47228 * 270.00009 * 3 2 1 5 5 H 1.48506 * 109.47095 * 29.99988 * 3 2 1 6 6 H 1.48501 * 109.47085 * 149.99899 * 3 2 1 7 7 C 1.38811 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00058 * 180.31629 * 7 2 1 9 9 N 1.36939 * 120.00123 * 0.32729 * 7 2 1 10 10 C 1.46501 * 120.00029 * 194.72094 * 9 7 2 11 11 H 1.08999 * 109.17670 * 53.62728 * 10 9 7 12 12 C 1.51686 * 108.24667 * 294.30992 * 10 9 7 13 13 C 1.53964 * 109.09481 * 294.56526 * 12 10 9 14 14 H 1.09002 * 113.67039 * 169.00720 * 13 12 10 15 15 C 1.57164 * 106.26363 * 294.09897 * 13 12 10 16 16 C 1.55172 * 99.58754 * 73.65388 * 15 13 12 17 17 H 1.09006 * 112.47947 * 162.91617 * 16 15 13 18 18 C 1.52975 * 109.32659 * 173.18625 * 10 9 7 19 19 N 1.47792 * 104.87481 * 40.39645 * 16 15 13 20 20 C 1.34775 * 125.85674 * 153.23224 * 19 16 15 21 21 O 1.21288 * 119.99895 * 355.44016 * 20 19 16 22 22 C 1.50700 * 120.00039 * 175.43693 * 20 19 16 23 23 C 1.50703 * 109.47222 * 185.70408 * 22 20 19 24 24 C 1.41373 * 128.00581 * 89.99787 * 23 22 20 25 25 N 1.30175 * 106.39497 * 179.97438 * 24 23 22 26 26 O 1.20917 * 111.60693 * 0.02562 * 25 24 23 27 27 C 1.34044 * 111.56678 * 359.75437 * 26 25 24 28 28 C 1.47081 * 108.28831 * 333.25244 * 19 16 15 29 29 H 0.96999 * 119.99551 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99779 * 14.71063 * 9 7 2 31 31 H 1.09000 * 109.07994 * 174.89973 * 12 10 9 32 32 H 1.08999 * 109.91520 * 54.73523 * 12 10 9 33 33 H 1.09008 * 111.96902 * 315.99543 * 15 13 12 34 34 H 1.08990 * 111.21426 * 191.01983 * 15 13 12 35 35 H 1.09003 * 109.53664 * 305.28965 * 18 10 9 36 36 H 1.09000 * 109.53595 * 185.13310 * 18 10 9 37 37 H 1.08993 * 109.47385 * 305.70692 * 22 20 19 38 38 H 1.09001 * 109.47183 * 65.70949 * 22 20 19 39 39 H 1.08007 * 126.80647 * 359.97438 * 24 23 22 40 40 H 1.07996 * 126.77628 * 180.28681 * 27 26 25 41 41 H 1.08990 * 109.97975 * 120.45942 * 28 19 16 42 42 H 1.09006 * 109.97352 * 241.70696 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0057 9 7 1.3255 -2.3881 -0.0057 10 6 2.0203 -3.6368 0.3171 11 1 2.5234 -3.5285 1.2780 12 6 3.0455 -3.9042 -0.7683 13 6 2.3147 -4.1657 -2.0980 14 1 2.9752 -4.1792 -2.9651 15 6 1.5192 -5.5075 -1.9066 16 6 0.3783 -5.0022 -0.9841 17 1 -0.4670 -5.6897 -0.9518 18 6 1.0018 -4.7749 0.4043 19 7 0.0090 -3.6785 -1.5277 20 6 -1.1974 -3.0881 -1.4167 21 8 -2.1191 -3.6841 -0.9005 22 6 -1.4013 -1.6873 -1.9338 23 6 -2.7832 -1.2121 -1.5656 24 6 -3.1852 -0.5267 -0.3962 25 7 -4.4654 -0.3214 -0.5125 26 8 -4.8954 -0.7675 -1.5508 27 6 -3.9267 -1.3382 -2.2806 28 6 1.1837 -3.1161 -2.2111 29 1 -0.4849 0.8401 0.0004 30 1 0.3804 -2.4013 -0.2237 31 1 3.6326 -4.7812 -0.4957 32 1 3.7045 -3.0428 -0.8770 33 1 2.1195 -6.2703 -1.4105 34 1 1.1270 -5.8724 -2.8558 35 1 0.2198 -4.5105 1.1161 36 1 1.5010 -5.6864 0.7332 37 1 -0.6588 -1.0244 -1.4898 38 1 -1.2920 -1.6809 -3.0183 39 1 -2.5551 -0.2319 0.4299 40 1 -4.0366 -1.8073 -3.2471 41 1 0.9512 -2.9307 -3.2596 42 1 1.4869 -2.1876 -1.7272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094983415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:18 Heat of formation + Delta-G solvation = 85.015557 kcal Electronic energy + Delta-G solvation = -27352.267393 eV Core-core repulsion = 23723.720021 eV Total energy + Delta-G solvation = -3628.547372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.77178 -42.34412 -39.41229 -36.05893 -35.27662 -34.36375 -32.96731 -32.66020 -32.11393 -29.88336 -28.76480 -26.52962 -25.43759 -24.00342 -23.35305 -22.56818 -22.02915 -20.37056 -19.80908 -19.18827 -18.59030 -18.42937 -17.81015 -16.93360 -16.54498 -16.16777 -15.97244 -15.55994 -15.30979 -14.94434 -14.39554 -14.16778 -14.00264 -13.87398 -13.61602 -13.42717 -13.28167 -13.11078 -12.96057 -12.85874 -12.62053 -12.57136 -12.33602 -12.06425 -11.95374 -11.67011 -11.49254 -11.21421 -11.17290 -10.87607 -10.72105 -10.44235 -10.12458 -9.28591 -8.39571 -7.83376 -5.15541 0.70002 1.40063 1.53157 1.58162 1.62269 1.82631 2.31851 2.55212 2.61436 3.39583 3.52884 3.61512 3.78836 3.92049 3.99794 4.19508 4.22316 4.22864 4.25513 4.42239 4.46220 4.50283 4.54388 4.70707 4.79899 4.82557 4.96190 4.99099 5.03849 5.12001 5.16092 5.18720 5.31558 5.45554 5.45770 5.50870 5.58764 5.72667 5.81744 5.96164 6.41985 6.76594 7.35314 7.42512 7.46927 8.17359 8.50502 9.30528 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.007914 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.226231 B = 3537.100181 C = 5313.899408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.056 4.056 3 Si 0.958 3.042 4 H -0.286 1.286 5 H -0.309 1.309 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.160 3.840 11 H 0.019 0.981 12 C -0.117 4.117 13 C -0.082 4.082 14 H 0.118 0.882 15 C -0.111 4.111 16 C 0.122 3.878 17 H 0.080 0.920 18 C -0.128 4.128 19 N -0.596 5.596 20 C 0.535 3.465 21 O -0.600 6.600 22 C -0.102 4.102 23 C -0.170 4.170 24 C 0.003 3.997 25 N -0.403 5.403 26 O 0.091 5.909 27 C -0.056 4.056 28 C 0.059 3.941 29 H 0.252 0.748 30 H 0.385 0.615 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.107 0.893 39 H 0.177 0.823 40 H 0.255 0.745 41 H 0.045 0.955 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -9.193 -8.986 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.789 3.211 4 H -0.213 1.213 5 H -0.236 1.236 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.052 3.948 11 H 0.037 0.963 12 C -0.156 4.156 13 C -0.100 4.100 14 H 0.136 0.864 15 C -0.148 4.148 16 C 0.019 3.981 17 H 0.098 0.902 18 C -0.167 4.167 19 N -0.329 5.329 20 C 0.326 3.674 21 O -0.483 6.483 22 C -0.141 4.141 23 C -0.174 4.174 24 C -0.175 4.175 25 N -0.109 5.109 26 O 0.027 5.973 27 C -0.137 4.137 28 C -0.063 4.063 29 H 0.062 0.938 30 H 0.227 0.773 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.122 0.878 37 H 0.184 0.816 38 H 0.125 0.875 39 H 0.194 0.806 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.768 -8.741 -7.854 12.073 hybrid contribution 0.578 1.016 0.384 1.230 sum 3.345 -7.725 -7.471 11.255 Atomic orbital electron populations 1.69306 1.05545 1.25491 1.58289 1.25327 0.96185 0.99642 1.03710 0.85381 0.77501 0.80947 0.77236 1.21257 1.23648 1.20756 1.19527 0.91668 0.84878 1.40005 0.90694 1.43938 1.11504 1.01986 1.81299 1.20258 0.92747 0.86056 0.95759 0.96278 1.21855 0.97419 1.01385 0.94940 1.22796 0.95607 0.93142 0.98477 0.86404 1.23310 0.95208 0.97106 0.99202 1.22325 0.97288 0.84561 0.93945 0.90201 1.22233 0.98102 0.99812 0.96562 1.48695 1.10774 1.19063 1.54329 1.20453 0.80729 0.87892 0.78314 1.90593 1.42500 1.66978 1.48240 1.20802 0.95847 0.94677 1.02791 1.20933 0.97423 1.03661 0.95377 1.25089 0.91037 1.00101 1.01227 1.73761 1.13966 1.19729 1.03427 1.84672 1.35491 1.54586 1.22515 1.26383 0.85933 1.00392 1.01008 1.23328 0.84622 1.03387 0.94942 0.93806 0.77280 0.90104 0.92502 0.87314 0.90043 0.95672 0.87751 0.81602 0.87501 0.80579 0.72935 0.93680 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -47.58 9.28 21.65 0.20 -47.38 16 2 C -0.06 -2.73 5.49 84.86 0.47 -2.26 16 3 Si 0.96 41.52 29.55 68.60 2.03 43.55 16 4 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.23 -10.78 7.77 84.03 0.65 -10.12 16 8 H 0.08 3.42 7.09 -2.91 -0.02 3.40 16 9 N -0.74 -32.13 2.75 -325.03 -0.89 -33.02 16 10 C 0.16 5.68 3.17 44.55 0.14 5.82 16 11 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 12 C -0.12 -3.19 5.10 30.49 0.16 -3.04 16 13 C -0.08 -1.98 4.37 -8.42 -0.04 -2.02 16 14 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.11 -2.36 6.30 32.80 0.21 -2.15 16 16 C 0.12 3.75 3.96 45.79 0.18 3.93 16 17 H 0.08 2.58 7.98 -2.38 -0.02 2.56 16 18 C -0.13 -4.16 5.41 30.88 0.17 -4.00 16 19 N -0.60 -21.43 1.73 -784.23 -1.35 -22.78 16 20 C 0.53 22.35 6.25 87.66 0.55 22.90 16 21 O -0.60 -28.91 16.28 -3.05 -0.05 -28.96 16 22 C -0.10 -3.99 5.39 29.10 0.16 -3.83 16 23 C -0.17 -6.69 4.83 -19.74 -0.10 -6.79 16 24 C 0.00 0.14 12.16 85.71 1.04 1.18 16 25 N -0.40 -16.73 12.07 -59.27 -0.72 -17.44 16 26 O 0.09 3.26 11.20 71.60 0.80 4.06 16 27 C -0.06 -1.78 12.26 67.18 0.82 -0.96 16 28 C 0.06 1.91 5.04 86.85 0.44 2.34 16 29 H 0.25 12.92 8.24 -92.71 -0.76 12.16 16 30 H 0.39 17.79 2.90 -92.71 -0.27 17.52 16 31 H 0.08 1.72 8.00 -2.39 -0.02 1.71 16 32 H 0.06 1.71 7.07 -2.39 -0.02 1.70 16 33 H 0.11 1.76 7.79 -2.38 -0.02 1.74 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.10 2.57 8.00 -2.39 -0.02 2.55 16 37 H 0.17 7.47 3.93 -2.39 -0.01 7.46 16 38 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.18 8.38 7.36 -2.91 -0.02 8.36 16 40 H 0.25 5.23 8.06 -2.91 -0.02 5.21 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.13 5.29 3.77 -19.77 -0.07 5.22 16 Total: -1.00 -63.06 320.71 5.59 -57.46 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: 0.73 Total: 43.51 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 4.85 Total: 1.00 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -2.76 Total: -120.62 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.75 Total: -24.90 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -63.06 5.59 -57.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094983415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.478 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds