Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.51447 * 2 1 4 4 N 1.46495 * 109.47069 * 60.00013 * 3 2 1 5 5 C 1.34779 * 119.99889 * 180.02562 * 4 3 2 6 6 O 1.21504 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.48167 * 119.99757 * 180.02562 * 5 4 3 8 8 C 1.39313 * 119.72416 * 179.97438 * 7 5 4 9 9 C 1.38584 * 119.05945 * 179.97438 * 8 7 5 10 10 C 1.38623 * 118.49403 * 0.02562 * 9 8 7 11 11 C 1.38561 * 119.34745 * 0.27157 * 10 9 8 12 12 N 1.31525 * 120.90390 * 359.42746 * 11 10 9 13 13 C 1.53296 * 109.51290 * 239.90120 * 2 1 3 14 14 N 1.47156 * 108.38248 * 292.32695 * 13 2 1 15 15 C 1.36940 * 120.98190 * 129.43705 * 14 13 2 16 16 H 1.07997 * 120.00141 * 206.23365 * 15 14 13 17 17 C 1.38818 * 119.99814 * 26.24615 * 15 14 13 18 18 N 1.31621 * 120.00210 * 16.90712 * 17 15 14 19 19 Si 1.86799 * 119.99813 * 196.90834 * 17 15 14 20 20 H 1.48500 * 109.47169 * 60.00000 * 19 17 15 21 21 H 1.48501 * 109.47024 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47046 * 299.99941 * 19 17 15 23 23 C 1.47146 * 118.03862 * 309.46434 * 14 13 2 24 24 C 1.53293 * 108.38450 * 50.52924 * 23 14 13 25 25 O 1.42959 * 109.27106 * 307.72852 * 24 23 14 26 26 H 1.09004 * 109.47430 * 59.99582 * 1 2 3 27 27 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46873 * 300.00145 * 1 2 3 29 29 H 1.09002 * 109.47021 * 300.00315 * 3 2 1 30 30 H 1.09002 * 109.46916 * 180.02562 * 3 2 1 31 31 H 0.97002 * 120.00262 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.46378 * 359.95801 * 8 7 5 33 33 H 1.08001 * 120.75184 * 180.02562 * 9 8 7 34 34 H 1.07995 * 120.32749 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.54662 * 179.70480 * 11 10 9 36 36 H 1.09004 * 109.68197 * 52.04810 * 13 2 1 37 37 H 1.08993 * 109.68688 * 172.56719 * 13 2 1 38 38 H 0.96998 * 120.00096 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.68700 * 170.26097 * 23 14 13 40 40 H 1.09004 * 109.67996 * 290.81376 * 23 14 13 41 41 H 1.09004 * 109.51065 * 67.62544 * 24 23 14 42 42 H 1.08995 * 109.51539 * 187.72464 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8794 3.4234 1.4091 6 8 2.5784 4.0133 0.6094 7 6 1.3865 4.1220 2.6192 8 6 1.7275 5.4555 2.8340 9 6 1.2585 6.0957 3.9701 10 6 0.4648 5.3796 4.8527 11 6 0.1704 4.0536 4.5786 12 7 0.6240 3.4720 3.4897 13 6 2.0419 -0.7246 -1.2501 14 7 1.6969 -2.1504 -1.1340 15 6 1.0617 -2.8073 -2.1539 16 1 0.4492 -3.6710 -1.9413 17 6 1.2052 -2.3631 -3.4613 18 7 2.1867 -1.5437 -3.7740 19 14 0.0054 -2.9282 -4.7768 20 1 -1.3701 -2.5101 -4.4048 21 1 0.3735 -2.3157 -6.0785 22 1 0.0587 -4.4077 -4.8926 23 6 2.0541 -2.8494 0.1106 24 6 1.5416 -2.0212 1.2944 25 8 2.0075 -0.6758 1.1658 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6780 1.9563 -0.8900 30 1 3.1310 1.4413 -0.0005 31 1 0.9955 1.6620 1.8349 32 1 2.3488 5.9828 2.1253 33 1 1.5057 7.1291 4.1635 34 1 0.0830 5.8494 5.7470 35 1 -0.4438 3.4913 5.2664 36 1 1.5696 -0.3037 -2.1377 37 1 3.1237 -0.6129 -1.3220 38 1 2.2868 -1.2331 -4.6874 39 1 1.5900 -3.8355 0.1241 40 1 3.1373 -2.9521 0.1761 41 1 0.4516 -2.0293 1.2996 42 1 1.9133 -2.4485 2.2257 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107685603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = -13.644364 kcal Electronic energy + Delta-G solvation = -25277.907585 eV Core-core repulsion = 21645.081998 eV Total energy + Delta-G solvation = -3632.825587 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69270 -39.36213 -38.46484 -34.96374 -34.31428 -32.94950 -31.87592 -31.31051 -31.19056 -27.91998 -26.66332 -25.84435 -24.20351 -23.62311 -23.19843 -21.33124 -20.52190 -18.85525 -18.11163 -17.04684 -16.84132 -16.20556 -15.80629 -15.40749 -15.16105 -15.05128 -14.78945 -14.32749 -14.07151 -13.83121 -13.71483 -13.46953 -13.44425 -12.98480 -12.73317 -12.43646 -12.21575 -11.86812 -11.54340 -11.16702 -10.99279 -10.79237 -10.66299 -10.33476 -10.28756 -10.25293 -10.24596 -9.96111 -9.68952 -9.49025 -9.46211 -9.01761 -8.77682 -8.52072 -6.72688 -5.83310 -3.26578 0.45500 0.94959 2.74613 3.21010 3.35768 3.42109 3.42475 3.73903 4.01147 4.28893 4.44901 4.51317 4.66519 4.71098 4.80659 5.17356 5.18636 5.35501 5.45414 5.50441 5.54622 5.70853 5.73634 5.81739 5.96158 5.97759 6.03757 6.12240 6.17511 6.30225 6.33791 6.50291 6.60093 6.70190 6.79058 6.85632 7.09233 7.43339 7.48364 7.71587 7.78011 7.91724 8.31481 8.34562 9.11990 9.75163 10.32513 11.24666 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.003316 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.270413 B = 8442.119207 C = 8889.156767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 C 0.137 3.863 4 N -0.693 5.693 5 C 0.563 3.437 6 O -0.539 6.539 7 C 0.086 3.914 8 C -0.114 4.114 9 C -0.083 4.083 10 C -0.156 4.156 11 C 0.097 3.903 12 N -0.457 5.457 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.383 6.383 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.413 0.587 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 12.072 16.922 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C 0.013 3.987 4 N -0.344 5.344 5 C 0.347 3.653 6 O -0.416 6.416 7 C -0.053 4.053 8 C -0.135 4.135 9 C -0.109 4.109 10 C -0.176 4.176 11 C -0.062 4.062 12 N -0.169 5.169 13 C 0.034 3.966 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.303 6.303 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.850 11.701 16.060 20.240 hybrid contribution -0.794 0.214 -0.351 0.894 sum -4.643 11.915 15.709 20.256 Atomic orbital electron populations 1.22211 0.95691 1.03244 1.00856 1.22545 0.93654 0.90506 0.89562 1.21457 1.00045 0.90115 0.87082 1.45852 1.51944 1.10962 1.25632 1.17883 0.80682 0.82266 0.84508 1.90784 1.38296 1.66595 1.45942 1.21298 0.96583 0.92363 0.95024 1.22167 0.98867 0.94536 0.97932 1.21632 0.95428 1.00595 0.93244 1.22372 0.98648 0.95986 1.00573 1.22830 0.97060 0.92606 0.93718 1.67598 1.08117 1.38525 1.02657 1.21289 0.97824 0.83934 0.93595 1.43985 1.68607 1.04936 1.13886 1.19118 1.21691 1.12185 0.85397 0.91466 1.25037 0.97287 1.00119 0.97078 1.70005 1.29188 1.36752 1.18618 0.86356 0.81015 0.78313 0.81016 1.20981 1.21547 1.20873 1.21597 0.97538 0.95207 0.87352 1.23033 0.98362 0.83096 0.98691 1.87821 1.72959 1.25768 1.43726 0.91928 0.90807 0.93727 0.89803 0.90572 0.74971 0.83356 0.84134 0.84317 0.82054 0.88533 0.95234 0.93375 0.92054 0.95661 0.93365 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.92 37.15 0.29 -2.61 16 2 C 0.08 1.51 0.76 -90.47 -0.07 1.44 16 3 C 0.14 2.45 4.82 -4.04 -0.02 2.43 16 4 N -0.69 -11.18 5.14 -61.15 -0.31 -11.49 16 5 C 0.56 9.15 7.81 -12.18 -0.10 9.05 16 6 O -0.54 -10.12 16.32 5.36 0.09 -10.03 16 7 C 0.09 1.15 6.75 -83.01 -0.56 0.59 16 8 C -0.11 -1.24 9.63 -39.05 -0.38 -1.62 16 9 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 10 C -0.16 -1.09 10.11 -39.32 -0.40 -1.48 16 11 C 0.10 0.86 11.18 -17.56 -0.20 0.66 16 12 N -0.46 -5.61 9.54 -9.80 -0.09 -5.71 16 13 C 0.16 3.77 4.12 -3.53 -0.01 3.76 16 14 N -0.59 -14.51 2.57 -171.83 -0.44 -14.95 16 15 C -0.25 -6.80 9.65 -15.06 -0.15 -6.95 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 18 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 19 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.11 2.27 6.74 -3.54 -0.02 2.25 16 24 C 0.05 0.82 6.60 37.31 0.25 1.06 16 25 O -0.38 -7.33 9.98 -35.23 -0.35 -7.68 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.42 6.12 -51.93 -0.32 1.10 16 28 H 0.04 0.70 6.87 -51.93 -0.36 0.34 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.41 6.35 6.53 -40.82 -0.27 6.09 16 32 H 0.15 1.56 7.64 -52.49 -0.40 1.16 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.83 6.25 -51.93 -0.32 0.51 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -31.77 343.51 -7.94 -39.72 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.75 Total: 6.23 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.84 Total: 7.55 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.23 Total: -57.28 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.26 Total: -17.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.77 -7.94 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107685603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.071 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds