Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.51447 * 2 1 4 4 N 1.46495 * 109.47069 * 60.00013 * 3 2 1 5 5 C 1.34779 * 119.99889 * 180.02562 * 4 3 2 6 6 O 1.21504 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.48167 * 119.99757 * 180.02562 * 5 4 3 8 8 C 1.39313 * 119.72416 * 179.97438 * 7 5 4 9 9 C 1.38584 * 119.05945 * 179.97438 * 8 7 5 10 10 C 1.38623 * 118.49403 * 0.02562 * 9 8 7 11 11 C 1.38561 * 119.34745 * 0.27157 * 10 9 8 12 12 N 1.31525 * 120.90390 * 359.42746 * 11 10 9 13 13 C 1.53296 * 109.51290 * 239.90120 * 2 1 3 14 14 N 1.47156 * 108.38248 * 292.32695 * 13 2 1 15 15 C 1.36940 * 120.98190 * 129.43705 * 14 13 2 16 16 H 1.07997 * 120.00141 * 206.23365 * 15 14 13 17 17 C 1.38818 * 119.99814 * 26.24615 * 15 14 13 18 18 N 1.31621 * 120.00210 * 16.90712 * 17 15 14 19 19 Si 1.86799 * 119.99813 * 196.90834 * 17 15 14 20 20 H 1.48500 * 109.47169 * 60.00000 * 19 17 15 21 21 H 1.48501 * 109.47024 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47046 * 299.99941 * 19 17 15 23 23 C 1.47146 * 118.03862 * 309.46434 * 14 13 2 24 24 C 1.53293 * 108.38450 * 50.52924 * 23 14 13 25 25 O 1.42959 * 109.27106 * 307.72852 * 24 23 14 26 26 H 1.09004 * 109.47430 * 59.99582 * 1 2 3 27 27 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46873 * 300.00145 * 1 2 3 29 29 H 1.09002 * 109.47021 * 300.00315 * 3 2 1 30 30 H 1.09002 * 109.46916 * 180.02562 * 3 2 1 31 31 H 0.97002 * 120.00262 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.46378 * 359.95801 * 8 7 5 33 33 H 1.08001 * 120.75184 * 180.02562 * 9 8 7 34 34 H 1.07995 * 120.32749 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.54662 * 179.70480 * 11 10 9 36 36 H 1.09004 * 109.68197 * 52.04810 * 13 2 1 37 37 H 1.08993 * 109.68688 * 172.56719 * 13 2 1 38 38 H 0.96998 * 120.00096 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.68700 * 170.26097 * 23 14 13 40 40 H 1.09004 * 109.67996 * 290.81376 * 23 14 13 41 41 H 1.09004 * 109.51065 * 67.62544 * 24 23 14 42 42 H 1.08995 * 109.51539 * 187.72464 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8794 3.4234 1.4091 6 8 2.5784 4.0133 0.6094 7 6 1.3865 4.1220 2.6192 8 6 1.7275 5.4555 2.8340 9 6 1.2585 6.0957 3.9701 10 6 0.4648 5.3796 4.8527 11 6 0.1704 4.0536 4.5786 12 7 0.6240 3.4720 3.4897 13 6 2.0419 -0.7246 -1.2501 14 7 1.6969 -2.1504 -1.1340 15 6 1.0617 -2.8073 -2.1539 16 1 0.4492 -3.6710 -1.9413 17 6 1.2052 -2.3631 -3.4613 18 7 2.1867 -1.5437 -3.7740 19 14 0.0054 -2.9282 -4.7768 20 1 -1.3701 -2.5101 -4.4048 21 1 0.3735 -2.3157 -6.0785 22 1 0.0587 -4.4077 -4.8926 23 6 2.0541 -2.8494 0.1106 24 6 1.5416 -2.0212 1.2944 25 8 2.0075 -0.6758 1.1658 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6780 1.9563 -0.8900 30 1 3.1310 1.4413 -0.0005 31 1 0.9955 1.6620 1.8349 32 1 2.3488 5.9828 2.1253 33 1 1.5057 7.1291 4.1635 34 1 0.0830 5.8494 5.7470 35 1 -0.4438 3.4913 5.2664 36 1 1.5696 -0.3037 -2.1377 37 1 3.1237 -0.6129 -1.3220 38 1 2.2868 -1.2331 -4.6874 39 1 1.5900 -3.8355 0.1241 40 1 3.1373 -2.9521 0.1761 41 1 0.4516 -2.0293 1.2996 42 1 1.9133 -2.4485 2.2257 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107685603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = -35.881105 kcal Electronic energy + Delta-G solvation = -25278.871843 eV Core-core repulsion = 21645.081998 eV Total energy + Delta-G solvation = -3633.789845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65507 -40.76721 -39.75192 -36.58547 -35.98320 -33.82472 -33.22392 -33.01323 -32.24401 -29.59316 -28.15195 -27.56097 -25.26161 -24.95481 -24.35545 -22.92555 -21.75507 -20.40440 -19.30915 -18.87641 -17.79667 -17.36915 -17.07177 -16.83701 -16.42325 -16.27151 -16.19232 -15.82011 -15.59771 -15.24411 -15.11990 -14.77375 -14.62394 -14.44271 -14.01380 -13.93057 -13.44176 -13.19490 -12.94059 -12.88186 -12.75850 -12.53935 -12.44750 -12.18317 -11.97529 -11.86037 -11.49036 -11.12527 -10.93505 -10.77115 -10.51972 -10.49597 -10.33537 -10.04498 -8.72037 -7.89272 -5.36167 -0.34766 0.28952 1.46583 1.49005 1.55759 1.69292 2.00227 2.48648 2.76985 2.89838 3.13952 3.25690 3.49319 3.81070 3.92508 3.99418 4.00079 4.07598 4.09650 4.12780 4.40933 4.45210 4.50765 4.54774 4.61190 4.69708 4.76407 4.79963 4.95185 5.03832 5.09702 5.10416 5.18071 5.19845 5.29599 5.33216 5.52332 5.61448 5.66978 6.29206 6.35428 6.37963 6.81843 7.06734 7.08990 7.76099 8.30554 9.16460 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.003316 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.270413 B = 8442.119207 C = 8889.156767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.145 3.855 4 N -0.688 5.688 5 C 0.560 3.440 6 O -0.576 6.576 7 C 0.052 3.948 8 C -0.123 4.123 9 C -0.078 4.078 10 C -0.133 4.133 11 C 0.088 3.912 12 N -0.481 5.481 13 C 0.169 3.831 14 N -0.607 5.607 15 C -0.261 4.261 16 H 0.074 0.926 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.275 1.275 23 C 0.103 3.897 24 C 0.052 3.948 25 O -0.387 6.387 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.418 0.582 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.193 0.807 36 H 0.068 0.932 37 H -0.006 1.006 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.013 0.987 41 H 0.060 0.940 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 12.875 20.171 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.021 3.979 4 N -0.339 5.339 5 C 0.346 3.654 6 O -0.456 6.456 7 C -0.084 4.084 8 C -0.145 4.145 9 C -0.104 4.104 10 C -0.153 4.153 11 C -0.071 4.071 12 N -0.193 5.193 13 C 0.043 3.957 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.092 0.908 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.201 1.201 23 C -0.022 4.022 24 C -0.025 4.025 25 O -0.306 6.306 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.159 0.841 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.209 0.791 36 H 0.087 0.913 37 H 0.012 0.988 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.969 12.483 19.353 23.790 hybrid contribution -0.123 -0.025 -1.208 1.215 sum -6.092 12.458 18.145 22.837 Atomic orbital electron populations 1.22096 0.94096 1.02850 1.01895 1.22195 0.94579 0.90387 0.87569 1.21163 0.99002 0.89769 0.87979 1.45699 1.52070 1.11158 1.24935 1.18451 0.79806 0.81907 0.85244 1.90747 1.39957 1.67267 1.47580 1.20862 0.99399 0.93270 0.94903 1.22270 0.99150 0.93756 0.99280 1.22060 0.94499 1.02094 0.91739 1.22873 0.96339 0.94997 1.01081 1.23478 0.96796 0.93946 0.92925 1.67501 1.08624 1.39439 1.03742 1.21035 0.95474 0.84398 0.94842 1.44242 1.68643 1.05479 1.14744 1.19481 1.21368 1.12129 0.86091 0.90823 1.25808 0.98807 1.00741 0.99175 1.70178 1.31026 1.38432 1.18559 0.85336 0.79079 0.78006 0.78010 1.20127 1.22311 1.20063 1.21807 0.97054 0.96320 0.87054 1.23122 0.99103 0.81715 0.98610 1.87832 1.73304 1.26556 1.42947 0.92529 0.91774 0.91021 0.90462 0.92264 0.74327 0.84080 0.80654 0.80014 0.79064 0.91336 0.98781 0.94032 0.90818 0.96910 0.92204 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 7.92 71.98 0.57 -4.78 16 2 C 0.09 3.67 0.76 -10.70 -0.01 3.66 16 3 C 0.15 5.46 4.82 86.38 0.42 5.88 16 4 N -0.69 -22.61 5.14 -465.67 -2.39 -25.00 16 5 C 0.56 18.80 7.81 86.88 0.68 19.48 16 6 O -0.58 -22.79 16.32 -3.73 -0.06 -22.85 16 7 C 0.05 1.39 6.75 41.91 0.28 1.67 16 8 C -0.12 -2.57 9.63 22.61 0.22 -2.35 16 9 C -0.08 -0.94 10.17 22.44 0.23 -0.71 16 10 C -0.13 -1.24 10.11 22.44 0.23 -1.01 16 11 C 0.09 1.25 11.18 84.82 0.95 2.20 16 12 N -0.48 -11.02 9.54 -184.91 -1.76 -12.79 16 13 C 0.17 8.36 4.12 86.35 0.36 8.71 16 14 N -0.61 -30.40 2.57 -697.55 -1.79 -32.19 16 15 C -0.26 -14.10 9.65 84.03 0.81 -13.28 16 16 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 17 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 18 N -0.94 -55.67 11.14 21.65 0.24 -55.43 16 19 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.10 4.24 6.74 86.35 0.58 4.82 16 24 C 0.05 1.73 6.60 72.08 0.48 2.21 16 25 O -0.39 -14.53 9.98 -148.98 -1.49 -16.02 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.39 6.12 -2.39 -0.01 2.38 16 28 H 0.07 2.12 6.87 -2.38 -0.02 2.11 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.42 12.67 6.53 -92.71 -0.61 12.07 16 32 H 0.14 3.02 7.64 -2.91 -0.02 3.00 16 33 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.07 3.76 6.14 -2.38 -0.01 3.74 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 1.90 6.25 -2.39 -0.01 1.89 16 42 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -72.66 343.51 1.41 -71.25 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.43 Total: 22.31 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 6.20 Total: 24.15 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -5.71 Total: -125.41 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.55 Total: -38.87 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.66 1.41 -71.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107685603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.365 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds