Wall clock time and date at job start Fri Apr 10 2020 17:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99904 * 2 1 4 4 C 1.38457 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.39393 * 119.53863 * 4.97972 * 4 2 1 6 6 C 1.36854 * 119.38241 * 179.71649 * 5 4 2 7 7 C 1.40355 * 118.48579 * 0.57133 * 6 5 4 8 8 C 1.47545 * 120.47139 * 179.73011 * 7 6 5 9 9 O 1.21594 * 119.99569 * 186.91354 * 8 7 6 10 10 N 1.34776 * 120.00337 * 6.90799 * 8 7 6 11 11 C 1.47022 * 125.64537 * 354.55118 * 10 8 7 12 12 C 1.54319 * 107.27056 * 180.79305 * 11 10 8 13 13 C 1.55161 * 102.94502 * 22.19038 * 12 11 10 14 14 O 1.42893 * 110.99935 * 82.57230 * 13 12 11 15 15 C 1.50695 * 111.00599 * 206.39110 * 13 12 11 16 16 H 1.08005 * 120.00152 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00004 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00075 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00058 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46907 * 119.99812 * 19 17 15 22 22 H 1.48502 * 109.46934 * 239.99749 * 19 17 15 23 23 C 1.47420 * 125.65137 * 174.23599 * 10 8 7 24 24 C 1.39555 * 119.04912 * 359.44766 * 7 6 5 25 25 N 1.31672 * 120.52131 * 0.26016 * 24 7 6 26 26 H 1.08992 * 109.47061 * 270.00408 * 1 2 3 27 27 H 1.08997 * 109.46874 * 30.00472 * 1 2 3 28 28 H 1.08998 * 109.46694 * 150.00127 * 1 2 3 29 29 H 1.09000 * 109.46805 * 239.99622 * 3 2 1 30 30 H 1.09004 * 109.46853 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47352 * 119.99519 * 3 2 1 32 32 H 1.08000 * 120.30957 * 0.02562 * 5 4 2 33 33 H 1.07995 * 120.76087 * 180.29306 * 6 5 4 34 34 H 1.09005 * 109.87990 * 300.20874 * 11 10 8 35 35 H 1.09003 * 109.88343 * 61.21939 * 11 10 8 36 36 H 1.09002 * 110.72485 * 140.55677 * 12 11 10 37 37 H 1.09008 * 110.72191 * 263.82751 * 12 11 10 38 38 H 0.96706 * 113.99879 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00643 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.36719 * 274.97964 * 23 10 8 41 41 H 1.09006 * 110.36364 * 37.30147 * 23 10 8 42 42 H 1.08008 * 119.73380 * 180.27620 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1573 -1.1990 0.0005 5 6 1.4547 -2.3984 -0.1042 6 6 2.1426 -3.5814 -0.1092 7 6 3.5411 -3.5431 0.0044 8 6 4.3259 -4.7925 0.0098 9 8 5.5204 -4.7590 0.2341 10 7 3.7187 -5.9708 -0.2339 11 6 2.2723 -6.1697 -0.4071 12 6 2.0423 -7.6770 -0.6444 13 6 3.3117 -8.3234 -0.0294 14 8 3.1770 -8.4709 1.3855 15 6 3.6135 -9.6480 -0.6815 16 1 2.9736 -10.0212 -1.4675 17 6 4.7058 -10.3840 -0.2741 18 7 5.4847 -9.9299 0.6833 19 14 5.0795 -12.0264 -1.0819 20 1 4.0590 -12.3095 -2.1229 21 1 6.4250 -11.9752 -1.7081 22 1 5.0512 -13.1002 -0.0566 23 6 4.3954 -7.2726 -0.3775 24 6 4.1790 -2.3060 0.1062 25 7 3.4795 -1.1905 0.1011 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8242 1.3265 -0.8900 30 1 1.4891 2.0973 -0.0005 31 1 2.8241 1.3266 0.8900 32 1 0.3778 -2.3938 -0.1857 33 1 1.6211 -4.5233 -0.1941 34 1 1.7441 -5.8510 0.4916 35 1 1.9198 -5.5987 -1.2662 36 1 1.1462 -8.0170 -0.1251 37 1 1.9770 -7.8941 -1.7107 38 1 3.9459 -8.8711 1.8142 39 1 6.2535 -10.4475 0.9697 40 1 4.7413 -7.4094 -1.4020 41 1 5.2310 -7.3445 0.3188 42 1 5.2550 -2.2634 0.1896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592836734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:25 Heat of formation + Delta-G solvation = -6.278210 kcal Electronic energy + Delta-G solvation = -25136.060128 eV Core-core repulsion = 21503.553961 eV Total energy + Delta-G solvation = -3632.506167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62239 -39.13802 -37.23056 -36.42657 -34.51428 -32.60682 -32.15258 -30.74901 -29.95677 -28.57333 -27.92071 -26.10105 -25.02649 -23.26298 -23.00392 -21.38784 -19.81305 -19.39455 -17.42458 -17.26497 -16.93374 -16.42058 -15.58800 -15.23474 -15.05621 -14.90508 -14.68638 -14.51869 -14.20006 -13.57867 -13.36491 -13.08315 -12.99898 -12.92905 -12.77034 -12.54069 -12.45449 -12.19374 -11.80970 -11.55364 -11.31899 -11.06637 -10.72717 -10.59350 -10.48042 -10.20074 -10.02531 -9.79584 -9.72178 -9.37663 -9.14681 -8.68955 -8.38617 -7.87573 -7.60782 -6.29826 -4.39611 1.04015 1.38622 2.69776 3.19010 3.28145 3.31065 3.32098 3.67184 4.12722 4.25470 4.40273 4.66540 4.88613 4.91762 4.97345 5.00840 5.09314 5.13394 5.17309 5.33446 5.34662 5.40338 5.54572 5.61404 5.73423 5.75429 5.94725 5.96559 6.14548 6.22703 6.45986 6.47992 6.67972 6.70638 6.83032 6.99570 7.16222 7.25432 7.34102 7.73640 7.97905 8.04987 8.24000 8.63683 8.77926 9.30385 9.45613 10.77391 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.003143 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.261970 B = 8907.773345 C = 9390.905432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.616 5.616 3 C 0.105 3.895 4 C 0.410 3.590 5 C -0.247 4.247 6 C -0.039 4.039 7 C -0.236 4.236 8 C 0.574 3.426 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.095 3.905 12 C -0.121 4.121 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.093 3.907 24 C 0.206 3.794 25 N -0.547 5.547 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.171 0.829 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.387 0.613 39 H 0.271 0.729 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 16.967 -2.427 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.329 5.329 3 C -0.038 4.038 4 C 0.175 3.825 5 C -0.271 4.271 6 C -0.064 4.064 7 C -0.244 4.244 8 C 0.363 3.637 9 O -0.432 6.432 10 N -0.335 5.335 11 C -0.027 4.027 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.028 4.028 24 C 0.047 3.953 25 N -0.264 5.264 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.187 0.813 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.239 0.761 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.353 18.252 -2.244 21.104 hybrid contribution 0.372 -1.797 -0.354 1.869 sum -9.981 16.455 -2.598 19.420 Atomic orbital electron populations 1.21774 0.78360 1.03155 1.01713 1.46138 1.05231 1.03317 1.78243 1.21522 0.96391 0.83586 1.02331 1.18551 0.88784 0.85851 0.89285 1.21160 1.01066 0.91630 1.13282 1.22756 0.93721 1.00348 0.89529 1.20735 0.94514 0.95392 1.13719 1.17582 0.86635 0.82170 0.77329 1.90743 1.15080 1.86598 1.50825 1.48556 1.07988 1.08121 1.68840 1.22427 0.82485 0.98544 0.99281 1.22707 1.00331 0.91701 1.01153 1.19587 0.87952 0.91416 0.80203 1.86054 1.46936 1.85202 1.21293 1.21527 1.11515 1.03738 1.20821 0.91405 1.25090 0.95177 0.98420 0.94596 1.69572 1.16482 1.38747 1.28490 0.86335 0.78293 0.82875 0.79311 1.19586 1.20752 1.20745 1.23311 0.98739 0.79628 1.01166 1.22645 0.99957 0.85287 0.87434 1.67333 1.05811 1.31330 1.21949 0.92827 0.90994 0.90798 0.92484 0.91364 0.92221 0.84758 0.81270 0.91365 0.91917 0.90526 0.90294 0.76092 0.91884 0.92049 0.89748 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.24 59.85 0.61 1.20 16 2 N -0.62 -6.18 3.38 -189.70 -0.64 -6.82 16 3 C 0.10 0.88 10.16 59.85 0.61 1.49 16 4 C 0.41 5.37 7.36 -155.28 -1.14 4.23 16 5 C -0.25 -3.00 9.20 -39.65 -0.36 -3.37 16 6 C -0.04 -0.54 8.63 -39.29 -0.34 -0.88 16 7 C -0.24 -4.00 5.89 -104.82 -0.62 -4.61 16 8 C 0.57 11.94 7.80 -12.47 -0.10 11.84 16 9 O -0.55 -13.28 16.62 5.28 0.09 -13.19 16 10 N -0.60 -12.48 3.33 -173.12 -0.58 -13.06 16 11 C 0.10 1.61 4.87 -3.07 -0.01 1.60 16 12 C -0.12 -2.30 6.13 -24.90 -0.15 -2.45 16 13 C 0.25 5.93 0.89 -89.62 -0.08 5.85 16 14 O -0.58 -14.88 13.18 -35.23 -0.46 -15.34 16 15 C -0.54 -13.73 8.25 -34.44 -0.28 -14.01 16 16 H 0.07 1.69 7.76 -52.48 -0.41 1.28 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 18 N -0.89 -23.71 10.72 55.43 0.59 -23.11 16 19 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.09 2.22 5.65 -2.53 -0.01 2.20 16 24 C 0.21 3.31 10.76 -17.13 -0.18 3.12 16 25 N -0.55 -8.18 9.54 -12.14 -0.12 -8.29 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 28 H 0.07 0.43 5.95 -51.93 -0.31 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.13 1.21 5.99 -52.49 -0.31 0.90 16 33 H 0.17 2.17 2.89 -54.29 -0.16 2.02 16 34 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 35 H 0.06 0.87 6.71 -51.93 -0.35 0.53 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.40 8.01 -51.92 -0.42 0.98 16 38 H 0.39 10.27 6.93 45.56 0.32 10.59 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 41 H 0.08 2.29 7.60 -51.93 -0.39 1.89 16 42 H 0.17 2.60 7.67 -52.48 -0.40 2.20 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -31.19 339.62 -8.02 -39.21 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -4.84 Total: 12.46 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -2.17 Total: 7.92 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.74 Total: -51.29 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.38 Total: -28.54 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.19 -8.02 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.937 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds