Wall clock time and date at job start Fri Apr 10 2020 17:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99904 * 2 1 4 4 C 1.38457 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.39393 * 119.53863 * 4.97972 * 4 2 1 6 6 C 1.36854 * 119.38241 * 179.71649 * 5 4 2 7 7 C 1.40355 * 118.48579 * 0.57133 * 6 5 4 8 8 C 1.47545 * 120.47139 * 179.73011 * 7 6 5 9 9 O 1.21594 * 119.99569 * 186.91354 * 8 7 6 10 10 N 1.34776 * 120.00337 * 6.90799 * 8 7 6 11 11 C 1.47022 * 125.64537 * 354.55118 * 10 8 7 12 12 C 1.54319 * 107.27056 * 180.79305 * 11 10 8 13 13 C 1.55161 * 102.94502 * 22.19038 * 12 11 10 14 14 O 1.42893 * 110.99935 * 82.57230 * 13 12 11 15 15 C 1.50695 * 111.00599 * 206.39110 * 13 12 11 16 16 H 1.08005 * 120.00152 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00004 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00075 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00058 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46907 * 119.99812 * 19 17 15 22 22 H 1.48502 * 109.46934 * 239.99749 * 19 17 15 23 23 C 1.47420 * 125.65137 * 174.23599 * 10 8 7 24 24 C 1.39555 * 119.04912 * 359.44766 * 7 6 5 25 25 N 1.31672 * 120.52131 * 0.26016 * 24 7 6 26 26 H 1.08992 * 109.47061 * 270.00408 * 1 2 3 27 27 H 1.08997 * 109.46874 * 30.00472 * 1 2 3 28 28 H 1.08998 * 109.46694 * 150.00127 * 1 2 3 29 29 H 1.09000 * 109.46805 * 239.99622 * 3 2 1 30 30 H 1.09004 * 109.46853 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47352 * 119.99519 * 3 2 1 32 32 H 1.08000 * 120.30957 * 0.02562 * 5 4 2 33 33 H 1.07995 * 120.76087 * 180.29306 * 6 5 4 34 34 H 1.09005 * 109.87990 * 300.20874 * 11 10 8 35 35 H 1.09003 * 109.88343 * 61.21939 * 11 10 8 36 36 H 1.09002 * 110.72485 * 140.55677 * 12 11 10 37 37 H 1.09008 * 110.72191 * 263.82751 * 12 11 10 38 38 H 0.96706 * 113.99879 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00643 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.36719 * 274.97964 * 23 10 8 41 41 H 1.09006 * 110.36364 * 37.30147 * 23 10 8 42 42 H 1.08008 * 119.73380 * 180.27620 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1573 -1.1990 0.0005 5 6 1.4547 -2.3984 -0.1042 6 6 2.1426 -3.5814 -0.1092 7 6 3.5411 -3.5431 0.0044 8 6 4.3259 -4.7925 0.0098 9 8 5.5204 -4.7590 0.2341 10 7 3.7187 -5.9708 -0.2339 11 6 2.2723 -6.1697 -0.4071 12 6 2.0423 -7.6770 -0.6444 13 6 3.3117 -8.3234 -0.0294 14 8 3.1770 -8.4709 1.3855 15 6 3.6135 -9.6480 -0.6815 16 1 2.9736 -10.0212 -1.4675 17 6 4.7058 -10.3840 -0.2741 18 7 5.4847 -9.9299 0.6833 19 14 5.0795 -12.0264 -1.0819 20 1 4.0590 -12.3095 -2.1229 21 1 6.4250 -11.9752 -1.7081 22 1 5.0512 -13.1002 -0.0566 23 6 4.3954 -7.2726 -0.3775 24 6 4.1790 -2.3060 0.1062 25 7 3.4795 -1.1905 0.1011 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8242 1.3265 -0.8900 30 1 1.4891 2.0973 -0.0005 31 1 2.8241 1.3266 0.8900 32 1 0.3778 -2.3938 -0.1857 33 1 1.6211 -4.5233 -0.1941 34 1 1.7441 -5.8510 0.4916 35 1 1.9198 -5.5987 -1.2662 36 1 1.1462 -8.0170 -0.1251 37 1 1.9770 -7.8941 -1.7107 38 1 3.9459 -8.8711 1.8142 39 1 6.2535 -10.4475 0.9697 40 1 4.7413 -7.4094 -1.4020 41 1 5.2310 -7.3445 0.3188 42 1 5.2550 -2.2634 0.1896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592836734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:25 Heat of formation + Delta-G solvation = -28.531338 kcal Electronic energy + Delta-G solvation = -25137.025096 eV Core-core repulsion = 21503.553961 eV Total energy + Delta-G solvation = -3633.471135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83660 -40.56303 -38.87214 -37.40605 -36.25984 -34.14392 -33.78585 -32.06280 -31.35775 -29.75142 -29.04962 -27.46126 -26.49213 -24.60331 -24.18200 -22.49346 -21.49268 -20.93616 -19.16142 -18.35255 -18.28432 -17.65918 -17.04559 -16.74439 -16.46298 -16.27034 -16.12670 -15.68420 -15.25742 -14.98352 -14.75371 -14.71666 -14.39504 -14.19081 -13.91363 -13.48487 -13.45518 -13.30615 -13.17668 -13.06730 -12.85654 -12.67227 -12.32327 -12.26075 -12.14648 -12.04426 -11.23370 -11.09722 -11.08746 -10.81204 -10.66271 -10.41937 -10.27705 -9.51121 -8.59809 -8.24802 -6.41887 -0.13748 0.32874 1.41889 1.45230 1.56060 1.89540 1.91172 2.12271 2.39706 2.91691 3.01335 3.40616 3.64014 3.75442 3.87485 3.97674 4.07462 4.15266 4.24325 4.30224 4.39453 4.47169 4.52936 4.54969 4.70017 4.74889 4.80134 4.91484 4.95530 4.98654 5.04162 5.08654 5.15985 5.28352 5.39283 5.45919 5.50573 5.77961 5.92287 6.04905 6.25107 6.61478 6.69895 7.02233 7.17394 7.31103 7.39783 8.80853 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.003143 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.261970 B = 8907.773345 C = 9390.905432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.611 5.611 3 C 0.100 3.900 4 C 0.403 3.597 5 C -0.234 4.234 6 C -0.034 4.034 7 C -0.260 4.260 8 C 0.567 3.433 9 O -0.602 6.602 10 N -0.608 5.608 11 C 0.095 3.905 12 C -0.114 4.114 13 C 0.231 3.769 14 O -0.590 6.590 15 C -0.553 4.553 16 H 0.073 0.927 17 C 0.022 3.978 18 N -0.920 5.920 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.281 1.281 23 C 0.105 3.895 24 C 0.202 3.798 25 N -0.563 5.563 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 18.489 -3.515 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.322 5.322 3 C -0.043 4.043 4 C 0.166 3.834 5 C -0.258 4.258 6 C -0.059 4.059 7 C -0.268 4.268 8 C 0.359 3.641 9 O -0.486 6.486 10 N -0.339 5.339 11 C -0.026 4.026 12 C -0.152 4.152 13 C 0.191 3.809 14 O -0.400 6.400 15 C -0.591 4.591 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.560 5.560 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.206 1.206 23 C -0.018 4.018 24 C 0.042 3.958 25 N -0.281 5.281 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.192 0.808 33 H 0.202 0.798 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.222 19.820 -3.346 24.623 hybrid contribution 1.465 -2.078 -0.002 2.542 sum -12.757 17.742 -3.348 22.107 Atomic orbital electron populations 1.22110 0.75757 1.05056 1.02952 1.46563 1.06871 1.02678 1.76075 1.21651 0.97222 0.84077 1.01322 1.19006 0.88413 0.87672 0.88268 1.21508 1.02838 0.90227 1.11252 1.22834 0.92134 1.01803 0.89102 1.20406 0.95731 0.93267 1.17434 1.18263 0.86442 0.83257 0.76152 1.90697 1.17431 1.87384 1.53107 1.48589 1.09535 1.06931 1.68864 1.22711 0.80175 0.97764 1.01948 1.22722 0.98258 0.92489 1.01711 1.19870 0.90561 0.91124 0.79366 1.86043 1.46360 1.85089 1.22463 1.21881 1.11590 1.04633 1.20975 0.90878 1.25872 0.95170 1.01604 0.95136 1.69697 1.16792 1.39829 1.29648 0.85376 0.77932 0.79015 0.78506 1.18496 1.21078 1.20645 1.22892 0.97916 0.82085 0.98953 1.22501 0.99827 0.85667 0.87763 1.67348 1.07172 1.30557 1.23059 0.91793 0.88442 0.89683 0.93326 0.87810 0.93466 0.80761 0.79845 0.89490 0.87792 0.89052 0.88837 0.77258 0.92080 0.93388 0.94265 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.24 127.77 1.31 1.94 16 2 N -0.61 -10.03 3.38 -754.09 -2.55 -12.58 16 3 C 0.10 1.40 10.16 127.77 1.30 2.70 16 4 C 0.40 9.47 7.36 133.25 0.98 10.45 16 5 C -0.23 -4.76 9.20 22.22 0.20 -4.56 16 6 C -0.03 -0.87 8.63 22.46 0.19 -0.68 16 7 C -0.26 -8.78 5.89 -19.99 -0.12 -8.89 16 8 C 0.57 24.43 7.80 86.70 0.68 25.10 16 9 O -0.60 -31.00 16.62 -4.01 -0.07 -31.07 16 10 N -0.61 -25.46 3.33 -819.89 -2.73 -28.19 16 11 C 0.10 2.98 4.87 86.73 0.42 3.41 16 12 C -0.11 -4.10 6.13 31.78 0.19 -3.90 16 13 C 0.23 11.10 0.89 -10.15 -0.01 11.10 16 14 O -0.59 -30.68 13.18 -148.98 -1.96 -32.64 16 15 C -0.55 -28.38 8.25 25.60 0.21 -28.16 16 16 H 0.07 3.59 7.76 -2.91 -0.02 3.56 16 17 C 0.02 1.17 5.30 84.66 0.45 1.62 16 18 N -0.92 -50.69 10.72 21.45 0.23 -50.46 16 19 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.10 5.21 5.65 86.86 0.49 5.70 16 24 C 0.20 6.62 10.76 85.03 0.92 7.54 16 25 N -0.56 -16.42 9.54 -192.33 -1.84 -18.25 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.10 0.31 7.92 -2.39 -0.02 0.29 16 28 H 0.08 0.49 5.95 -2.39 -0.01 0.48 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.72 7.79 -2.38 -0.02 0.70 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.18 2.10 5.99 -2.91 -0.02 2.08 16 33 H 0.19 3.98 2.89 -4.60 -0.01 3.96 16 34 H 0.09 2.44 6.74 -2.38 -0.02 2.42 16 35 H 0.10 2.47 6.71 -2.39 -0.02 2.45 16 36 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 3.06 8.01 -2.38 -0.02 3.04 16 38 H 0.38 20.93 6.93 -74.05 -0.51 20.41 16 39 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.05 2.45 8.03 -2.39 -0.02 2.43 16 41 H 0.04 2.27 7.60 -2.38 -0.02 2.25 16 42 H 0.16 5.24 7.67 -2.91 -0.02 5.22 16 Total: -1.00 -72.20 339.62 0.88 -71.32 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.54 Total: 34.79 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 7.22 Total: 23.36 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -6.88 Total: -109.48 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -2.03 Total: -63.71 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -72.20 0.88 -71.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.785 kcal (2) G-P(sol) polarization free energy of solvation -72.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds