Wall clock time and date at job start Fri Apr 10 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00020 * 2 1 4 4 C 1.39023 * 120.00020 * 179.97438 * 2 1 3 5 5 C 1.39127 * 119.64139 * 7.31912 * 4 2 1 6 6 C 1.39497 * 118.92751 * 180.02562 * 5 4 2 7 7 C 1.48162 * 120.88384 * 180.02562 * 6 5 4 8 8 O 1.21514 * 119.99752 * 23.71315 * 7 6 5 9 9 N 1.34773 * 120.00452 * 203.70898 * 7 6 5 10 10 C 1.47428 * 125.64490 * 357.67101 * 9 7 6 11 11 C 1.54907 * 104.82941 * 155.91340 * 10 9 7 12 12 C 1.55158 * 101.58539 * 37.01163 * 11 10 9 13 13 O 1.42897 * 110.71903 * 83.03728 * 12 11 10 14 14 C 1.50697 * 110.72189 * 206.13702 * 12 11 10 15 15 H 1.08006 * 119.99768 * 357.55943 * 14 12 11 16 16 C 1.37882 * 120.00087 * 177.28228 * 14 12 11 17 17 N 1.31515 * 119.99909 * 0.27073 * 16 14 12 18 18 Si 1.86794 * 119.99972 * 180.27741 * 16 14 12 19 19 H 1.48502 * 109.47178 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47171 * 119.99983 * 18 16 14 21 21 H 1.48501 * 109.47148 * 239.99812 * 18 16 14 22 22 C 1.47319 * 125.61767 * 177.90226 * 9 7 6 23 23 C 1.40022 * 118.23713 * 0.27192 * 6 5 4 24 24 C 1.37946 * 119.17347 * 359.44035 * 23 6 5 25 25 N 1.31920 * 121.00108 * 0.57837 * 24 23 6 26 26 H 1.08992 * 109.47126 * 185.13280 * 1 2 3 27 27 H 1.09001 * 109.46795 * 305.13559 * 1 2 3 28 28 H 1.09001 * 109.46781 * 65.13034 * 1 2 3 29 29 H 1.08999 * 109.46940 * 269.99796 * 3 2 1 30 30 H 1.09004 * 109.47472 * 29.99526 * 3 2 1 31 31 H 1.09001 * 109.47365 * 150.00141 * 3 2 1 32 32 H 1.07997 * 120.54093 * 0.02562 * 5 4 2 33 33 H 1.08998 * 110.36707 * 37.07765 * 10 9 7 34 34 H 1.09000 * 110.36939 * 274.74983 * 10 9 7 35 35 H 1.08999 * 111.00381 * 278.93736 * 11 10 9 36 36 H 1.09001 * 111.03858 * 155.10148 * 11 10 9 37 37 H 0.96701 * 113.99762 * 182.44281 * 13 12 11 38 38 H 0.96989 * 119.99925 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.06132 * 61.67761 * 22 9 7 40 40 H 1.08999 * 109.84754 * 300.41405 * 22 9 7 41 41 H 1.07996 * 120.41280 * 179.72162 * 23 6 5 42 42 H 1.08004 * 119.50277 * 180.27107 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2040 0.0005 5 6 1.4655 -2.3996 -0.1530 6 6 2.1778 -3.5990 -0.1497 7 6 1.4821 -4.8972 -0.3104 8 8 0.3999 -4.9424 -0.8612 9 7 2.0494 -6.0280 0.1542 10 6 3.3733 -6.1242 0.7957 11 6 3.2994 -7.4025 1.6675 12 6 2.4470 -8.3409 0.7731 13 8 3.2641 -8.9862 -0.2056 14 6 1.7177 -9.3590 1.6112 15 1 1.8652 -9.3833 2.6809 16 6 0.8578 -10.2558 1.0133 17 7 0.6782 -10.2261 -0.2892 18 14 -0.0521 -11.5127 2.0533 19 1 0.3218 -11.3386 3.4799 20 1 -1.5159 -11.3178 1.8973 21 1 0.3151 -12.8814 1.6093 22 6 1.4507 -7.3730 0.1004 23 6 3.5673 -3.5439 0.0148 24 6 4.1796 -2.3158 0.1549 25 7 3.4751 -1.2004 0.1472 26 1 -0.3633 -1.0235 0.0919 27 1 -0.3633 0.5915 0.8404 28 1 -0.3633 0.4322 -0.9324 29 1 2.3792 1.5833 -1.0277 30 1 1.6085 2.0285 0.5138 31 1 3.1500 1.1384 0.5138 32 1 0.3922 -2.3993 -0.2728 33 1 3.5569 -5.2495 1.4197 34 1 4.1540 -6.2239 0.0416 35 1 2.7968 -7.2017 2.6136 36 1 4.2925 -7.8192 1.8359 37 1 2.7734 -9.5554 -0.8143 38 1 0.0730 -10.8567 -0.7097 39 1 1.2888 -7.6690 -0.9361 40 1 0.5049 -7.3790 0.6420 41 1 4.1528 -4.4513 0.0273 42 1 5.2515 -2.2668 0.2777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:39 Heat of formation + Delta-G solvation = -13.845917 kcal Electronic energy + Delta-G solvation = -25188.901796 eV Core-core repulsion = 21556.067469 eV Total energy + Delta-G solvation = -3632.834327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61361 -39.16354 -37.25703 -36.54381 -34.44548 -32.53616 -32.23512 -30.61280 -30.04648 -28.47626 -27.88384 -25.69829 -25.37202 -23.65085 -22.77584 -21.54850 -19.79553 -19.30974 -17.50834 -17.19504 -16.74502 -16.01368 -15.61832 -15.45388 -15.40998 -14.94020 -14.83545 -14.39275 -14.08593 -13.92244 -13.48910 -13.16324 -12.98905 -12.87259 -12.72500 -12.43589 -12.29216 -12.08978 -11.85639 -11.53154 -11.40934 -11.07611 -10.76792 -10.70378 -10.50124 -10.25809 -10.06435 -9.89269 -9.67701 -9.37211 -9.23332 -8.70807 -8.35945 -7.99466 -7.63759 -6.32450 -4.41015 0.96844 1.30810 2.75874 3.17916 3.22479 3.27196 3.30440 3.48583 3.98978 4.24278 4.43395 4.65814 4.83762 4.95509 5.05122 5.11076 5.12929 5.17465 5.21849 5.38945 5.44462 5.49894 5.64088 5.66301 5.73193 5.79028 5.79650 5.93669 6.10059 6.26769 6.44247 6.44629 6.71106 6.76497 6.78965 6.88020 7.20519 7.22635 7.32377 7.69814 7.95807 8.05285 8.08913 8.56795 8.63914 9.26664 9.36186 10.75426 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003340 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.412418 B = 8381.354572 C = 8918.091685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.620 5.620 3 C 0.102 3.898 4 C 0.395 3.605 5 C -0.187 4.187 6 C -0.031 4.031 7 C 0.558 3.442 8 O -0.543 6.543 9 N -0.599 5.599 10 C 0.092 3.908 11 C -0.119 4.119 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.070 3.930 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.103 3.897 23 C -0.218 4.218 24 C 0.142 3.858 25 N -0.535 5.535 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.385 0.615 38 H 0.270 0.730 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 17.370 1.478 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.336 5.336 3 C -0.042 4.042 4 C 0.161 3.839 5 C -0.213 4.213 6 C -0.042 4.042 7 C 0.346 3.654 8 O -0.422 6.422 9 N -0.331 5.331 10 C -0.031 4.031 11 C -0.157 4.157 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.534 5.534 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.018 4.018 23 C -0.241 4.241 24 C -0.014 4.014 25 N -0.253 5.253 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.288 18.572 1.419 19.113 hybrid contribution -1.492 -1.750 0.002 2.299 sum 2.796 16.822 1.421 17.112 Atomic orbital electron populations 1.21793 0.78391 1.03690 1.01416 1.46119 1.05084 1.02857 1.79523 1.21513 0.97639 0.83893 1.01106 1.18164 0.88398 0.85655 0.91646 1.21513 1.01611 0.90416 1.07712 1.20181 0.93957 0.93556 0.96488 1.17875 0.85061 0.82768 0.79701 1.90748 1.21310 1.86420 1.43697 1.48763 1.19124 1.08287 1.56879 1.22748 0.85024 0.99263 0.96049 1.22801 1.01422 0.93652 0.97850 1.19502 0.85784 0.88608 0.85386 1.86089 1.39690 1.65657 1.47995 1.21551 1.25557 1.15947 0.94507 0.91416 1.25084 0.95747 0.97250 0.95251 1.69646 1.37366 1.37332 1.09026 0.86337 0.79328 0.80760 0.80428 1.19569 1.20767 1.20716 1.23166 0.98399 0.78228 1.02045 1.22709 0.94556 1.00739 1.06063 1.22357 0.99457 0.86456 0.93176 1.66966 1.06138 1.32353 1.19818 0.89993 0.92105 0.92451 0.93684 0.92044 0.90213 0.83979 0.90799 0.91077 0.90403 0.90277 0.76437 0.91966 0.91334 0.91296 0.82980 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.57 59.85 0.63 1.42 16 2 N -0.62 -7.00 3.39 -189.68 -0.64 -7.64 16 3 C 0.10 0.90 10.56 59.85 0.63 1.54 16 4 C 0.40 5.48 7.36 -155.08 -1.14 4.34 16 5 C -0.19 -2.85 8.85 -38.78 -0.34 -3.19 16 6 C -0.03 -0.51 5.77 -104.68 -0.60 -1.11 16 7 C 0.56 11.33 7.72 -12.19 -0.09 11.24 16 8 O -0.54 -12.78 17.00 5.35 0.09 -12.68 16 9 N -0.60 -12.17 3.33 -171.27 -0.57 -12.75 16 10 C 0.09 1.55 5.01 -2.53 -0.01 1.54 16 11 C -0.12 -2.28 6.23 -24.58 -0.15 -2.43 16 12 C 0.25 5.82 0.85 -89.94 -0.08 5.75 16 13 O -0.58 -14.33 13.08 -35.23 -0.46 -14.79 16 14 C -0.54 -13.75 8.11 -34.44 -0.28 -14.03 16 15 H 0.07 1.71 7.77 -52.48 -0.41 1.30 16 16 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 17 N -0.89 -23.47 10.96 55.43 0.61 -22.87 16 18 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.10 2.44 5.39 -2.90 -0.02 2.42 16 23 C -0.22 -2.99 8.09 -39.02 -0.32 -3.30 16 24 C 0.14 1.73 11.16 -17.62 -0.20 1.53 16 25 N -0.53 -7.26 9.04 -12.48 -0.11 -7.37 16 26 H 0.08 0.78 5.38 -51.93 -0.28 0.50 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.08 0.77 7.27 -51.93 -0.38 0.39 16 32 H 0.14 2.11 5.71 -52.49 -0.30 1.81 16 33 H 0.07 1.05 6.07 -51.93 -0.32 0.73 16 34 H 0.07 1.13 7.34 -51.93 -0.38 0.75 16 35 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.38 9.73 7.24 45.56 0.33 10.06 16 38 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.07 1.78 8.00 -51.93 -0.42 1.37 16 40 H 0.07 1.78 7.81 -51.93 -0.41 1.37 16 41 H 0.15 1.91 4.39 -52.49 -0.23 1.68 16 42 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -30.50 340.62 -7.91 -38.41 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.87 Total: 11.99 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.06 Total: 7.40 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.72 Total: -50.63 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.37 Total: -27.47 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.50 -7.91 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.564 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds