Wall clock time and date at job start Fri Apr 10 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00020 * 2 1 4 4 C 1.39023 * 120.00020 * 179.97438 * 2 1 3 5 5 C 1.39127 * 119.64139 * 7.31912 * 4 2 1 6 6 C 1.39497 * 118.92751 * 180.02562 * 5 4 2 7 7 C 1.48162 * 120.88384 * 180.02562 * 6 5 4 8 8 O 1.21514 * 119.99752 * 23.71315 * 7 6 5 9 9 N 1.34773 * 120.00452 * 203.70898 * 7 6 5 10 10 C 1.47428 * 125.64490 * 357.67101 * 9 7 6 11 11 C 1.54907 * 104.82941 * 155.91340 * 10 9 7 12 12 C 1.55158 * 101.58539 * 37.01163 * 11 10 9 13 13 O 1.42897 * 110.71903 * 83.03728 * 12 11 10 14 14 C 1.50697 * 110.72189 * 206.13702 * 12 11 10 15 15 H 1.08006 * 119.99768 * 357.55943 * 14 12 11 16 16 C 1.37882 * 120.00087 * 177.28228 * 14 12 11 17 17 N 1.31515 * 119.99909 * 0.27073 * 16 14 12 18 18 Si 1.86794 * 119.99972 * 180.27741 * 16 14 12 19 19 H 1.48502 * 109.47178 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47171 * 119.99983 * 18 16 14 21 21 H 1.48501 * 109.47148 * 239.99812 * 18 16 14 22 22 C 1.47319 * 125.61767 * 177.90226 * 9 7 6 23 23 C 1.40022 * 118.23713 * 0.27192 * 6 5 4 24 24 C 1.37946 * 119.17347 * 359.44035 * 23 6 5 25 25 N 1.31920 * 121.00108 * 0.57837 * 24 23 6 26 26 H 1.08992 * 109.47126 * 185.13280 * 1 2 3 27 27 H 1.09001 * 109.46795 * 305.13559 * 1 2 3 28 28 H 1.09001 * 109.46781 * 65.13034 * 1 2 3 29 29 H 1.08999 * 109.46940 * 269.99796 * 3 2 1 30 30 H 1.09004 * 109.47472 * 29.99526 * 3 2 1 31 31 H 1.09001 * 109.47365 * 150.00141 * 3 2 1 32 32 H 1.07997 * 120.54093 * 0.02562 * 5 4 2 33 33 H 1.08998 * 110.36707 * 37.07765 * 10 9 7 34 34 H 1.09000 * 110.36939 * 274.74983 * 10 9 7 35 35 H 1.08999 * 111.00381 * 278.93736 * 11 10 9 36 36 H 1.09001 * 111.03858 * 155.10148 * 11 10 9 37 37 H 0.96701 * 113.99762 * 182.44281 * 13 12 11 38 38 H 0.96989 * 119.99925 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.06132 * 61.67761 * 22 9 7 40 40 H 1.08999 * 109.84754 * 300.41405 * 22 9 7 41 41 H 1.07996 * 120.41280 * 179.72162 * 23 6 5 42 42 H 1.08004 * 119.50277 * 180.27107 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2040 0.0005 5 6 1.4655 -2.3996 -0.1530 6 6 2.1778 -3.5990 -0.1497 7 6 1.4821 -4.8972 -0.3104 8 8 0.3999 -4.9424 -0.8612 9 7 2.0494 -6.0280 0.1542 10 6 3.3733 -6.1242 0.7957 11 6 3.2994 -7.4025 1.6675 12 6 2.4470 -8.3409 0.7731 13 8 3.2641 -8.9862 -0.2056 14 6 1.7177 -9.3590 1.6112 15 1 1.8652 -9.3833 2.6809 16 6 0.8578 -10.2558 1.0133 17 7 0.6782 -10.2261 -0.2892 18 14 -0.0521 -11.5127 2.0533 19 1 0.3218 -11.3386 3.4799 20 1 -1.5159 -11.3178 1.8973 21 1 0.3151 -12.8814 1.6093 22 6 1.4507 -7.3730 0.1004 23 6 3.5673 -3.5439 0.0148 24 6 4.1796 -2.3158 0.1549 25 7 3.4751 -1.2004 0.1472 26 1 -0.3633 -1.0235 0.0919 27 1 -0.3633 0.5915 0.8404 28 1 -0.3633 0.4322 -0.9324 29 1 2.3792 1.5833 -1.0277 30 1 1.6085 2.0285 0.5138 31 1 3.1500 1.1384 0.5138 32 1 0.3922 -2.3993 -0.2728 33 1 3.5569 -5.2495 1.4197 34 1 4.1540 -6.2239 0.0416 35 1 2.7968 -7.2017 2.6136 36 1 4.2925 -7.8192 1.8359 37 1 2.7734 -9.5554 -0.8143 38 1 0.0730 -10.8567 -0.7097 39 1 1.2888 -7.6690 -0.9361 40 1 0.5049 -7.3790 0.6420 41 1 4.1528 -4.4513 0.0273 42 1 5.2515 -2.2668 0.2777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:39 Heat of formation + Delta-G solvation = -35.024219 kcal Electronic energy + Delta-G solvation = -25189.820156 eV Core-core repulsion = 21556.067469 eV Total energy + Delta-G solvation = -3633.752687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84067 -40.59199 -38.96937 -37.47501 -36.19891 -34.21336 -33.73899 -31.84436 -31.46572 -29.66218 -29.16321 -27.36954 -26.44932 -25.07033 -24.01871 -22.69377 -21.50813 -20.74423 -19.16440 -18.70368 -17.90177 -17.36359 -17.19976 -16.70290 -16.56712 -16.36152 -16.20836 -15.94607 -15.19935 -15.05965 -14.81479 -14.73879 -14.66564 -14.34304 -13.84490 -13.54692 -13.37882 -13.33412 -13.17417 -13.00285 -12.88326 -12.68874 -12.34275 -12.28243 -12.22230 -12.08513 -11.40563 -11.19310 -11.07896 -10.79802 -10.68147 -10.41528 -10.28936 -9.68464 -8.54769 -8.28198 -6.43791 -0.23551 0.28580 1.39406 1.43100 1.53566 1.71376 1.85628 2.04953 2.37202 2.87765 2.98557 3.29753 3.57606 3.75277 3.91706 3.98986 4.05850 4.14961 4.22956 4.32387 4.37031 4.49358 4.52530 4.55342 4.65195 4.67425 4.78219 4.80394 4.87350 4.97320 5.00341 5.09711 5.14561 5.22413 5.34595 5.46214 5.51576 5.73559 5.95477 6.03356 6.29664 6.49612 6.64434 6.97578 7.05472 7.27253 7.35087 8.78070 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003340 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.412418 B = 8381.354572 C = 8918.091685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.622 5.622 3 C 0.099 3.901 4 C 0.392 3.608 5 C -0.203 4.203 6 C -0.048 4.048 7 C 0.554 3.446 8 O -0.589 6.589 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.114 4.114 12 C 0.234 3.766 13 O -0.586 6.586 14 C -0.556 4.556 15 H 0.068 0.932 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.218 4.218 24 C 0.156 3.844 25 N -0.539 5.539 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.377 0.623 38 H 0.270 0.730 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.166 0.834 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 19.350 2.786 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.337 5.337 3 C -0.043 4.043 4 C 0.157 3.843 5 C -0.228 4.228 6 C -0.058 4.058 7 C 0.344 3.656 8 O -0.471 6.471 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.151 4.151 12 C 0.193 3.807 13 O -0.394 6.394 14 C -0.594 4.594 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.556 5.556 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.203 1.203 22 C -0.004 4.004 23 C -0.241 4.241 24 C -0.001 4.001 25 N -0.258 5.258 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.183 0.817 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.179 20.599 2.747 21.680 hybrid contribution -2.086 -2.264 -0.428 3.108 sum 4.093 18.335 2.319 18.929 Atomic orbital electron populations 1.21952 0.77246 1.03456 1.03088 1.46455 1.06055 1.02818 1.78323 1.21658 0.97641 0.83297 1.01690 1.18307 0.88687 0.86080 0.91201 1.21506 1.01522 0.90869 1.08951 1.19921 0.95290 0.91501 0.99136 1.18572 0.84627 0.83949 0.78466 1.90706 1.23516 1.87252 1.45666 1.48790 1.20316 1.07022 1.57196 1.22976 0.83417 0.99659 0.96424 1.22808 1.01460 0.93411 0.97469 1.19707 0.86672 0.88739 0.85563 1.86077 1.39707 1.65572 1.48069 1.21887 1.26026 1.16645 0.94845 0.91349 1.25823 0.96528 0.99023 0.96239 1.69751 1.37772 1.37886 1.10217 0.85419 0.77789 0.78620 0.79295 1.18812 1.21105 1.20296 1.22685 0.97633 0.80719 0.99334 1.22822 0.93043 1.02138 1.06049 1.23024 1.01146 0.85237 0.90666 1.67130 1.05823 1.32902 1.19899 0.91327 0.89902 0.91091 0.93228 0.89491 0.90864 0.84741 0.87097 0.89409 0.89870 0.88494 0.77339 0.92044 0.94761 0.94592 0.81660 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.57 127.77 1.35 2.71 16 2 N -0.62 -12.81 3.39 -754.03 -2.56 -15.37 16 3 C 0.10 1.50 10.56 127.77 1.35 2.84 16 4 C 0.39 10.22 7.36 133.08 0.98 11.20 16 5 C -0.20 -6.13 8.85 22.79 0.20 -5.93 16 6 C -0.05 -1.55 5.77 -19.90 -0.11 -1.66 16 7 C 0.55 23.06 7.72 86.88 0.67 23.73 16 8 O -0.59 -29.29 17.00 -3.76 -0.06 -29.36 16 9 N -0.60 -24.76 3.33 -814.07 -2.71 -27.48 16 10 C 0.10 3.05 5.01 86.85 0.43 3.48 16 11 C -0.11 -4.17 6.23 31.99 0.20 -3.97 16 12 C 0.23 11.11 0.85 -10.35 -0.01 11.10 16 13 O -0.59 -29.04 13.08 -148.98 -1.95 -30.99 16 14 C -0.56 -28.79 8.11 25.60 0.21 -28.58 16 15 H 0.07 3.45 7.77 -2.91 -0.02 3.42 16 16 C 0.02 1.28 5.27 84.66 0.45 1.73 16 17 N -0.92 -49.69 10.96 21.45 0.24 -49.46 16 18 Si 0.96 41.86 29.54 68.60 2.03 43.88 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.12 5.91 5.39 86.67 0.47 6.38 16 23 C -0.22 -5.38 8.09 22.63 0.18 -5.20 16 24 C 0.16 3.21 11.16 84.61 0.94 4.16 16 25 N -0.54 -13.07 9.04 -193.40 -1.75 -14.82 16 26 H 0.07 1.30 5.38 -2.39 -0.01 1.28 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.87 8.07 -2.39 -0.02 0.85 16 31 H 0.07 1.22 7.27 -2.39 -0.02 1.20 16 32 H 0.13 4.16 5.71 -2.91 -0.02 4.14 16 33 H 0.11 2.75 6.07 -2.39 -0.01 2.73 16 34 H 0.09 2.54 7.34 -2.39 -0.02 2.52 16 35 H 0.08 2.94 8.03 -2.39 -0.02 2.92 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.38 19.73 7.24 -74.06 -0.54 19.19 16 38 H 0.27 14.02 8.31 -92.72 -0.77 13.25 16 39 H 0.03 1.89 8.00 -2.39 -0.02 1.87 16 40 H 0.04 1.97 7.81 -2.39 -0.02 1.95 16 41 H 0.17 3.56 4.39 -2.91 -0.01 3.55 16 42 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -68.85 340.62 1.06 -67.78 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.52 Total: 33.81 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 7.31 Total: 21.99 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -6.78 Total: -107.12 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: -2.01 Total: -60.34 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -68.85 1.06 -67.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.760 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds