Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.32613 * 2 1 4 4 C 1.54912 * 110.36596 * 237.64235 * 2 1 3 5 5 C 1.55155 * 101.57968 * 204.15525 * 4 2 1 6 6 H 1.09000 * 110.72417 * 276.96258 * 5 4 2 7 7 N 1.46498 * 110.71914 * 153.86706 * 5 4 2 8 8 C 1.36938 * 120.00187 * 154.99963 * 7 5 4 9 9 H 1.07999 * 119.99658 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00241 * 179.97438 * 8 7 5 11 11 N 1.31609 * 119.99983 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99863 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46819 * 89.99528 * 12 10 8 14 14 H 1.48496 * 109.47021 * 209.99702 * 12 10 8 15 15 H 1.48502 * 109.47071 * 329.99857 * 12 10 8 16 16 C 1.54327 * 102.94571 * 35.50272 * 5 4 2 17 17 N 1.47024 * 107.26774 * 337.80617 * 16 5 4 18 18 C 1.34780 * 125.64847 * 179.20685 * 17 16 5 19 19 O 1.21278 * 120.00386 * 179.69053 * 18 17 16 20 20 C 1.50707 * 119.99690 * 359.68630 * 18 17 16 21 21 C 1.50698 * 109.46952 * 180.02562 * 20 18 17 22 22 C 1.38823 * 120.35394 * 90.00145 * 21 20 18 23 23 C 1.38382 * 118.48742 * 179.97438 * 22 21 20 24 24 C 1.38921 * 119.11091 * 0.02562 * 23 22 21 25 25 O 1.35666 * 119.68988 * 179.97438 * 24 23 22 26 26 N 1.32252 * 120.62914 * 0.02562 * 24 23 22 27 27 C 1.31964 * 121.64722 * 359.68594 * 26 24 23 28 28 H 1.09001 * 109.47185 * 299.22411 * 1 2 3 29 29 H 1.09000 * 109.46659 * 59.21736 * 1 2 3 30 30 H 1.08993 * 109.47315 * 179.21888 * 1 2 3 31 31 H 1.08997 * 111.00012 * 322.22590 * 4 2 1 32 32 H 1.08992 * 111.00287 * 86.04288 * 4 2 1 33 33 H 0.97006 * 120.00026 * 334.99270 * 7 5 4 34 34 H 0.97004 * 120.00238 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.88184 * 218.39040 * 16 5 4 36 36 H 1.09002 * 109.88385 * 97.22047 * 16 5 4 37 37 H 1.08997 * 109.47117 * 300.00376 * 20 18 17 38 38 H 1.09002 * 109.46743 * 60.00082 * 20 18 17 39 39 H 1.07995 * 120.76362 * 0.02562 * 22 21 20 40 40 H 1.07993 * 120.44995 * 179.97438 * 23 22 21 41 41 H 0.96699 * 114.00321 * 89.99174 * 25 24 23 42 42 H 1.08001 * 119.58451 * 180.30935 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7773 -1.2268 5 6 3.4777 -1.2006 -0.7328 6 1 4.1952 -0.3924 -0.8745 7 7 3.9249 -2.4145 -1.4204 8 6 5.2630 -2.6782 -1.5435 9 1 5.9886 -1.9914 -1.1334 10 6 5.6867 -3.8286 -2.1946 11 7 6.9728 -4.0817 -2.3134 12 14 4.4315 -5.0169 -2.9033 13 1 4.1249 -4.6349 -4.3052 14 1 4.9836 -6.3951 -2.8751 15 1 3.1882 -4.9650 -2.0929 16 6 3.2493 -1.4761 0.7684 17 7 2.0430 -0.7372 1.1691 18 6 1.4996 -0.7302 2.4025 19 8 0.5016 -0.0770 2.6218 20 6 2.1321 -1.5344 3.5091 21 6 1.3368 -1.3568 4.7767 22 6 0.2864 -2.2150 5.0719 23 6 -0.4176 -2.0170 6.2467 24 6 -0.0519 -0.9719 7.0858 25 8 -0.7343 -0.7667 8.2402 26 7 0.9546 -0.1744 6.7694 27 6 1.6479 -0.3417 5.6591 28 1 -0.3633 0.5017 0.8969 29 1 -0.3633 0.5260 -0.8829 30 1 -0.3633 -1.0275 -0.0140 31 1 1.4510 -1.6496 -1.4390 32 1 2.1393 -0.1289 -2.1001 33 1 3.2731 -3.0316 -1.7883 34 1 7.2689 -4.8855 -2.7686 35 1 4.1064 -1.1267 1.3440 36 1 3.1012 -2.5437 0.9311 37 1 2.1427 -2.5885 3.2318 38 1 3.1540 -1.1906 3.6695 39 1 0.0249 -3.0195 4.4005 40 1 -1.2408 -2.6656 6.5075 41 1 -0.3742 -1.2440 9.0002 42 1 2.4668 0.3263 5.4360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989222374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = -18.890199 kcal Electronic energy + Delta-G solvation = -24609.480639 eV Core-core repulsion = 20976.427576 eV Total energy + Delta-G solvation = -3633.053064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82277 -39.95636 -37.80264 -37.10884 -34.39614 -33.48338 -32.25643 -31.65485 -31.28560 -29.01736 -27.46657 -25.49843 -23.94993 -23.82560 -22.88432 -21.39926 -20.51062 -19.05672 -18.80174 -17.80799 -17.18321 -16.84527 -16.43750 -16.07801 -15.52160 -15.00383 -14.77695 -14.46719 -14.23062 -13.71834 -13.46314 -13.45546 -13.37250 -12.90802 -12.74788 -12.61687 -12.30335 -12.14372 -12.05069 -11.91726 -11.78786 -11.58067 -11.24618 -10.92892 -10.77346 -10.47710 -10.18012 -10.08228 -9.73155 -9.66205 -9.55459 -9.11970 -8.93161 -8.46387 -7.48930 -5.91996 -3.30525 0.75773 1.03752 2.69287 3.03255 3.26442 3.29715 3.31037 3.36231 3.62185 4.38663 4.45156 4.49406 4.56338 4.68704 4.76066 4.93970 4.99968 5.01224 5.10663 5.25353 5.30848 5.40840 5.45558 5.49730 5.51529 5.66630 5.70625 5.73488 5.85404 5.92492 6.00941 6.04086 6.24584 6.28402 6.31180 6.34136 6.54987 6.68122 7.22897 7.67055 7.71022 7.82112 8.26003 8.26591 9.02812 9.75067 9.92870 11.25515 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003092 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.442143 B = 9053.564208 C = 9688.667185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.078 0.922 7 N -0.737 5.737 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.542 6.542 20 C -0.096 4.096 21 C -0.119 4.119 22 C -0.046 4.046 23 C -0.183 4.183 24 C 0.303 3.697 25 O -0.484 6.484 26 N -0.502 5.502 27 C 0.138 3.862 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.364 0.636 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.398 0.602 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 4.091 13.898 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.096 0.904 7 N -0.378 5.378 8 C -0.385 4.385 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.420 6.420 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.072 4.072 23 C -0.205 4.205 24 C 0.124 3.876 25 O -0.291 6.291 26 N -0.220 5.220 27 C -0.019 4.019 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.255 0.745 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.125 5.436 14.335 20.182 hybrid contribution -0.639 -2.032 -0.802 2.276 sum -13.763 3.404 13.533 19.600 Atomic orbital electron populations 1.22159 0.94323 1.02364 1.03220 1.21852 0.94770 0.95452 0.84525 0.90754 1.23219 0.97743 1.00369 0.96707 1.21138 0.93372 0.90542 0.88359 0.90435 1.42739 1.05129 1.22986 1.66970 1.19077 0.81742 1.05919 1.31759 0.88926 1.24686 0.95580 0.98039 1.00307 1.69691 1.12611 1.27777 1.47373 0.86582 0.81170 0.81422 0.79480 1.20914 1.21613 1.20310 1.23275 0.85443 0.96528 1.00173 1.48644 1.28798 1.48300 1.08702 1.20034 0.84051 0.81968 0.82137 1.90651 1.25602 1.43888 1.81889 1.20578 1.00086 1.02484 0.90506 1.20349 0.97783 0.97422 0.96567 1.21374 0.92617 0.97982 0.95229 1.22044 1.02585 0.99112 0.96709 1.19174 0.89536 0.90199 0.88681 1.84788 1.52591 1.73867 1.17830 1.67156 1.06907 1.27628 1.20342 1.22347 0.96887 0.94606 0.88035 0.89760 0.92345 0.92964 0.90819 0.89868 0.80244 0.92834 0.91594 0.90921 0.87543 0.87365 0.84414 0.84252 0.74481 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.72 37.16 0.32 -1.78 16 2 C 0.14 1.81 3.76 -66.41 -0.25 1.56 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -1.95 6.13 -24.58 -0.15 -2.10 16 5 C 0.18 2.93 3.61 -66.10 -0.24 2.69 16 6 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.74 -15.46 4.95 -51.65 -0.26 -15.72 16 8 C -0.26 -6.55 10.44 -15.06 -0.16 -6.71 16 9 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -27.53 13.97 55.49 0.78 -26.75 16 12 Si 0.88 20.65 27.74 -169.99 -4.71 15.93 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 16 C 0.07 1.04 6.24 -3.06 -0.02 1.02 16 17 N -0.61 -8.35 3.24 -163.04 -0.53 -8.88 16 18 C 0.53 7.25 7.62 -10.98 -0.08 7.17 16 19 O -0.54 -8.93 13.70 5.56 0.08 -8.85 16 20 C -0.10 -1.01 5.05 -29.03 -0.15 -1.16 16 21 C -0.12 -1.32 4.39 -104.48 -0.46 -1.78 16 22 C -0.05 -0.48 9.85 -39.31 -0.39 -0.87 16 23 C -0.18 -1.85 10.04 -39.28 -0.39 -2.25 16 24 C 0.30 3.54 7.74 -17.12 -0.13 3.40 16 25 O -0.48 -4.79 13.56 -18.70 -0.25 -5.04 16 26 N -0.50 -6.59 10.39 -13.33 -0.14 -6.73 16 27 C 0.14 1.63 10.85 -17.56 -0.19 1.44 16 28 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.36 7.61 5.62 -40.82 -0.23 7.38 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.11 8.03 -51.93 -0.42 0.70 16 37 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.40 1.76 9.06 45.56 0.41 2.18 16 42 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -33.37 350.28 -7.33 -40.70 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.18 Total: 9.22 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.38 Total: 0.84 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.15 Total: -58.08 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.18 Total: -13.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.93 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.37 -7.33 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.807 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds