Wall clock time and date at job start Fri Apr 10 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.32613 * 2 1 4 4 C 1.54912 * 110.36596 * 237.64235 * 2 1 3 5 5 C 1.55155 * 101.57968 * 204.15525 * 4 2 1 6 6 H 1.09000 * 110.72417 * 276.96258 * 5 4 2 7 7 N 1.46498 * 110.71914 * 153.86706 * 5 4 2 8 8 C 1.36938 * 120.00187 * 154.99963 * 7 5 4 9 9 H 1.07999 * 119.99658 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00241 * 179.97438 * 8 7 5 11 11 N 1.31609 * 119.99983 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99863 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46819 * 89.99528 * 12 10 8 14 14 H 1.48496 * 109.47021 * 209.99702 * 12 10 8 15 15 H 1.48502 * 109.47071 * 329.99857 * 12 10 8 16 16 C 1.54327 * 102.94571 * 35.50272 * 5 4 2 17 17 N 1.47024 * 107.26774 * 337.80617 * 16 5 4 18 18 C 1.34780 * 125.64847 * 179.20685 * 17 16 5 19 19 O 1.21278 * 120.00386 * 179.69053 * 18 17 16 20 20 C 1.50707 * 119.99690 * 359.68630 * 18 17 16 21 21 C 1.50698 * 109.46952 * 180.02562 * 20 18 17 22 22 C 1.38823 * 120.35394 * 90.00145 * 21 20 18 23 23 C 1.38382 * 118.48742 * 179.97438 * 22 21 20 24 24 C 1.38921 * 119.11091 * 0.02562 * 23 22 21 25 25 O 1.35666 * 119.68988 * 179.97438 * 24 23 22 26 26 N 1.32252 * 120.62914 * 0.02562 * 24 23 22 27 27 C 1.31964 * 121.64722 * 359.68594 * 26 24 23 28 28 H 1.09001 * 109.47185 * 299.22411 * 1 2 3 29 29 H 1.09000 * 109.46659 * 59.21736 * 1 2 3 30 30 H 1.08993 * 109.47315 * 179.21888 * 1 2 3 31 31 H 1.08997 * 111.00012 * 322.22590 * 4 2 1 32 32 H 1.08992 * 111.00287 * 86.04288 * 4 2 1 33 33 H 0.97006 * 120.00026 * 334.99270 * 7 5 4 34 34 H 0.97004 * 120.00238 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.88184 * 218.39040 * 16 5 4 36 36 H 1.09002 * 109.88385 * 97.22047 * 16 5 4 37 37 H 1.08997 * 109.47117 * 300.00376 * 20 18 17 38 38 H 1.09002 * 109.46743 * 60.00082 * 20 18 17 39 39 H 1.07995 * 120.76362 * 0.02562 * 22 21 20 40 40 H 1.07993 * 120.44995 * 179.97438 * 23 22 21 41 41 H 0.96699 * 114.00321 * 89.99174 * 25 24 23 42 42 H 1.08001 * 119.58451 * 180.30935 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7773 -1.2268 5 6 3.4777 -1.2006 -0.7328 6 1 4.1952 -0.3924 -0.8745 7 7 3.9249 -2.4145 -1.4204 8 6 5.2630 -2.6782 -1.5435 9 1 5.9886 -1.9914 -1.1334 10 6 5.6867 -3.8286 -2.1946 11 7 6.9728 -4.0817 -2.3134 12 14 4.4315 -5.0169 -2.9033 13 1 4.1249 -4.6349 -4.3052 14 1 4.9836 -6.3951 -2.8751 15 1 3.1882 -4.9650 -2.0929 16 6 3.2493 -1.4761 0.7684 17 7 2.0430 -0.7372 1.1691 18 6 1.4996 -0.7302 2.4025 19 8 0.5016 -0.0770 2.6218 20 6 2.1321 -1.5344 3.5091 21 6 1.3368 -1.3568 4.7767 22 6 0.2864 -2.2150 5.0719 23 6 -0.4176 -2.0170 6.2467 24 6 -0.0519 -0.9719 7.0858 25 8 -0.7343 -0.7667 8.2402 26 7 0.9546 -0.1744 6.7694 27 6 1.6479 -0.3417 5.6591 28 1 -0.3633 0.5017 0.8969 29 1 -0.3633 0.5260 -0.8829 30 1 -0.3633 -1.0275 -0.0140 31 1 1.4510 -1.6496 -1.4390 32 1 2.1393 -0.1289 -2.1001 33 1 3.2731 -3.0316 -1.7883 34 1 7.2689 -4.8855 -2.7686 35 1 4.1064 -1.1267 1.3440 36 1 3.1012 -2.5437 0.9311 37 1 2.1427 -2.5885 3.2318 38 1 3.1540 -1.1906 3.6695 39 1 0.0249 -3.0195 4.4005 40 1 -1.2408 -2.6656 6.5075 41 1 -0.3742 -1.2440 9.0002 42 1 2.4668 0.3263 5.4360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989222374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:04 Heat of formation + Delta-G solvation = -44.786146 kcal Electronic energy + Delta-G solvation = -24610.603572 eV Core-core repulsion = 20976.427576 eV Total energy + Delta-G solvation = -3634.175996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70600 -40.99250 -38.88984 -38.00653 -36.03616 -34.37703 -33.50059 -33.13781 -32.23038 -30.50589 -28.35449 -26.62353 -25.51234 -24.74623 -23.91344 -22.48929 -21.87349 -19.92578 -19.81520 -19.61977 -18.08079 -17.88297 -17.48128 -17.00459 -16.58891 -16.33282 -15.99330 -15.69325 -15.26865 -14.99799 -14.86221 -14.48679 -14.37369 -14.19512 -13.81497 -13.68867 -13.53407 -13.31464 -13.14793 -12.96154 -12.87801 -12.70270 -12.63265 -12.36740 -12.14513 -11.94233 -11.79564 -11.52935 -11.03511 -10.91685 -10.60854 -10.44918 -9.77104 -9.59984 -9.33844 -7.99045 -5.34166 -0.04635 0.23782 1.42508 1.45087 1.52161 1.64428 2.00132 2.51618 2.56153 2.79633 3.31035 3.41341 3.59093 3.70479 3.73124 3.85932 3.91262 3.99434 4.00822 4.15923 4.31620 4.34571 4.46373 4.49986 4.52567 4.66849 4.73610 4.76729 4.82594 4.90835 4.96633 5.13293 5.16489 5.21331 5.27016 5.32069 5.54083 5.57533 5.81437 6.24527 6.58316 6.62036 6.91325 7.09718 7.19753 7.84344 8.02468 9.21790 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003092 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.442143 B = 9053.564208 C = 9688.667185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.081 0.919 4 C -0.129 4.129 5 C 0.167 3.833 6 H 0.072 0.928 7 N -0.739 5.739 8 C -0.229 4.229 9 H 0.065 0.935 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.949 3.051 13 H -0.282 1.282 14 H -0.301 1.301 15 H -0.249 1.249 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.571 6.571 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.051 4.051 23 C -0.182 4.182 24 C 0.290 3.710 25 O -0.494 6.494 26 N -0.533 5.533 27 C 0.124 3.876 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.419 0.581 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 3.692 14.094 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.058 3.942 6 H 0.090 0.910 7 N -0.382 5.382 8 C -0.360 4.360 9 H 0.083 0.917 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.777 3.223 13 H -0.208 1.208 14 H -0.228 1.228 15 H -0.173 1.173 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.451 6.451 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.077 4.077 23 C -0.203 4.203 24 C 0.112 3.888 25 O -0.304 6.304 26 N -0.252 5.252 27 C -0.032 4.032 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.280 0.720 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.174 5.071 14.575 21.643 hybrid contribution -0.041 -1.775 -0.772 1.936 sum -15.215 3.296 13.804 20.807 Atomic orbital electron populations 1.22050 0.93834 1.02003 1.03230 1.21926 0.95092 0.95688 0.84087 0.90095 1.23130 0.95506 1.00692 0.97424 1.21325 0.94851 0.88651 0.89403 0.91019 1.42684 1.03263 1.24487 1.67725 1.19042 0.83394 1.04438 1.29152 0.91737 1.25443 0.97297 1.00418 1.01969 1.69868 1.15034 1.28597 1.49706 0.85501 0.79666 0.78213 0.78892 1.20838 1.22826 1.17303 1.22939 0.86148 0.96499 0.98577 1.48657 1.28453 1.48176 1.09069 1.20528 0.83582 0.81629 0.82421 1.90650 1.26948 1.45197 1.82277 1.20598 1.00516 1.02841 0.89019 1.20439 0.98283 0.97539 0.96642 1.21700 0.92179 0.98250 0.95554 1.22291 1.02951 0.98863 0.96206 1.19455 0.89400 0.90483 0.89465 1.84732 1.52769 1.74564 1.18368 1.67144 1.08026 1.28788 1.21248 1.22601 0.97313 0.95207 0.88091 0.91611 0.90399 0.93492 0.90660 0.88442 0.79854 0.93422 0.90815 0.91185 0.85921 0.85651 0.82486 0.81867 0.72021 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.72 71.98 0.63 -2.99 16 2 C 0.13 3.24 3.76 45.47 0.17 3.41 16 3 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.13 -3.18 6.13 31.99 0.20 -2.99 16 5 C 0.17 5.19 3.61 46.18 0.17 5.35 16 6 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 7 N -0.74 -29.64 4.95 -317.33 -1.57 -31.21 16 8 C -0.23 -11.69 10.44 84.03 0.88 -10.82 16 9 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 10 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 11 N -0.98 -59.51 13.97 21.65 0.30 -59.20 16 12 Si 0.95 42.11 27.74 68.60 1.90 44.01 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.25 -9.71 6.52 99.48 0.65 -9.06 16 16 C 0.08 2.25 6.24 86.73 0.54 2.79 16 17 N -0.61 -15.29 3.24 -788.13 -2.55 -17.84 16 18 C 0.53 13.42 7.62 87.66 0.67 14.09 16 19 O -0.57 -18.02 13.70 -3.02 -0.04 -18.06 16 20 C -0.09 -1.68 5.05 29.10 0.15 -1.53 16 21 C -0.13 -2.61 4.39 -19.77 -0.09 -2.70 16 22 C -0.05 -0.96 9.85 22.44 0.22 -0.74 16 23 C -0.18 -3.35 10.04 22.47 0.23 -3.12 16 24 C 0.29 6.50 7.74 84.79 0.66 7.15 16 25 O -0.49 -9.25 13.56 -89.83 -1.22 -10.46 16 26 N -0.53 -13.74 10.39 -308.95 -3.21 -16.95 16 27 C 0.12 2.83 10.85 84.63 0.92 3.75 16 28 H 0.07 1.84 5.89 -2.39 -0.01 1.83 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.88 7.92 -2.39 -0.02 1.86 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.37 14.30 5.62 -92.70 -0.52 13.78 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 37 H 0.12 1.91 8.09 -2.39 -0.02 1.89 16 38 H 0.13 1.91 8.09 -2.39 -0.02 1.89 16 39 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.42 3.21 9.06 -74.06 -0.67 2.54 16 42 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -72.25 350.28 -0.79 -73.04 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.20 Total: 27.80 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.80 Total: 8.88 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -7.03 Total: -125.21 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.26 Total: -28.52 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.90 Total: 44.01 kcal Total: -72.25 -0.79 -73.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.254 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds