Wall clock time and date at job start Fri Apr 10 2020 17:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35432 * 116.99603 * 2 1 4 4 N 1.32228 * 119.80330 * 0.02562 * 3 2 1 5 5 C 1.31875 * 121.80286 * 179.97438 * 4 3 2 6 6 C 1.38358 * 121.18589 * 0.02562 * 5 4 3 7 7 C 1.38336 * 119.45883 * 359.73729 * 6 5 4 8 8 C 1.39993 * 118.34616 * 0.49700 * 7 6 5 9 9 C 1.47525 * 120.59564 * 179.77729 * 8 7 6 10 10 O 1.21589 * 120.00064 * 215.62529 * 9 8 7 11 11 N 1.34770 * 119.99837 * 35.63437 * 9 8 7 12 12 C 1.47429 * 125.65024 * 355.81132 * 11 9 8 13 13 C 1.54912 * 104.83289 * 155.91015 * 12 11 9 14 14 H 1.08997 * 111.00348 * 155.12385 * 13 12 11 15 15 N 1.46500 * 111.00419 * 278.94088 * 13 12 11 16 16 C 1.36929 * 119.99906 * 273.54150 * 15 13 12 17 17 H 1.08007 * 120.00037 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00143 * 179.72839 * 16 15 13 19 19 N 1.31621 * 119.99705 * 0.27278 * 18 16 15 20 20 Si 1.86800 * 120.00286 * 180.27928 * 18 16 15 21 21 H 1.48498 * 109.47346 * 89.99444 * 20 18 16 22 22 H 1.48496 * 109.47348 * 209.99823 * 20 18 16 23 23 H 1.48498 * 109.46958 * 329.99739 * 20 18 16 24 24 C 1.55165 * 101.57797 * 37.01379 * 13 12 11 25 25 C 1.47018 * 125.65027 * 175.86254 * 11 9 8 26 26 H 1.09001 * 109.88585 * 300.59469 * 25 11 9 27 27 C 1.53007 * 109.88299 * 61.60051 * 25 11 9 28 28 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47394 * 300.00103 * 1 2 3 30 30 H 1.08999 * 109.46943 * 60.00320 * 1 2 3 31 31 H 1.08002 * 119.40835 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.27020 * 180.02562 * 6 5 4 33 33 H 1.07997 * 120.83079 * 180.25908 * 7 6 5 34 34 H 1.08999 * 110.36462 * 37.07781 * 12 11 9 35 35 H 1.08998 * 110.36980 * 274.75445 * 12 11 9 36 36 H 0.97000 * 119.99686 * 93.54874 * 15 13 12 37 37 H 0.97005 * 119.99782 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.71806 * 82.86294 * 24 13 12 39 39 H 1.09004 * 110.71405 * 206.13507 * 24 13 12 40 40 H 1.08994 * 109.46920 * 58.54789 * 27 25 11 41 41 H 1.09003 * 109.46934 * 178.54884 * 27 25 11 42 42 H 1.09002 * 109.46897 * 298.54878 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8769 3.5084 0.0010 6 6 3.2524 3.6576 0.0005 7 6 4.0587 2.5335 0.0050 8 6 3.4449 1.2753 -0.0008 9 6 4.2570 0.0437 -0.0013 10 8 3.8793 -0.9333 -0.6188 11 7 5.4174 0.0014 0.6827 12 6 6.0345 1.1328 1.3987 13 6 6.9342 0.4772 2.4760 14 1 7.7461 1.1442 2.7656 15 7 6.1466 0.0751 3.6440 16 6 5.9037 0.9737 4.6482 17 1 6.2924 1.9790 4.5790 18 6 5.1527 0.5944 5.7524 19 7 4.6787 -0.6306 5.8365 20 14 4.8147 1.8225 7.1187 21 1 3.5567 2.5552 6.8258 22 1 4.6786 1.1017 8.4098 23 1 5.9403 2.7872 7.2067 24 6 7.4759 -0.7629 1.7167 25 6 6.2781 -1.1804 0.8378 26 1 5.7220 -1.9831 1.3221 27 6 6.7754 -1.6454 -0.5324 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.2483 4.3866 0.0019 32 1 3.6931 4.6436 0.0014 33 1 5.1348 2.6242 0.0089 34 1 5.2673 1.7482 1.8685 35 1 6.6363 1.7316 0.7150 36 1 5.7974 -0.8277 3.7060 37 1 4.1542 -0.8958 6.6082 38 1 8.3322 -0.4929 1.0987 39 1 7.7379 -1.5581 2.4146 40 1 7.3236 -0.8357 -1.0139 41 1 7.4331 -2.5056 -0.4075 42 1 5.9236 -1.9262 -1.1519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989406348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:10 Heat of formation + Delta-G solvation = -9.412915 kcal Electronic energy + Delta-G solvation = -25942.856564 eV Core-core repulsion = 22310.214467 eV Total energy + Delta-G solvation = -3632.642098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84206 -39.44806 -37.78353 -37.14599 -33.97201 -33.08383 -31.34599 -31.18081 -30.47051 -28.43887 -27.19171 -25.66840 -24.59666 -23.70559 -22.91932 -21.86091 -20.11995 -19.07204 -18.17529 -17.34014 -17.02727 -16.77574 -16.15475 -15.80968 -15.20380 -14.76795 -14.62823 -14.06016 -13.86902 -13.68483 -13.54674 -13.31538 -13.19380 -13.07572 -12.55521 -12.47568 -12.15788 -11.85424 -11.70590 -11.63577 -11.15915 -11.15738 -10.96019 -10.76509 -10.66991 -10.33838 -10.02135 -9.93336 -9.83419 -9.73828 -9.35875 -9.02280 -8.49249 -8.16328 -7.04609 -5.83606 -3.14043 0.84966 1.29259 3.03972 3.17826 3.35846 3.38427 3.43173 3.45603 3.89538 4.26645 4.51477 4.73662 4.77812 4.99309 5.12189 5.13228 5.20620 5.33144 5.35090 5.39288 5.48974 5.51344 5.58822 5.67757 5.68899 5.79707 5.86579 5.88837 5.97704 6.06601 6.17453 6.22487 6.34788 6.41626 6.45160 6.59388 6.69588 6.84460 7.29592 7.61864 7.77348 7.96733 8.33444 8.57429 9.45272 10.00825 10.35156 11.38282 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005980 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.047185 B = 4680.978748 C = 5944.297260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.280 6.280 3 C 0.369 3.631 4 N -0.546 5.546 5 C 0.157 3.843 6 C -0.220 4.220 7 C -0.012 4.012 8 C -0.192 4.192 9 C 0.584 3.416 10 O -0.532 6.532 11 N -0.593 5.593 12 C 0.063 3.937 13 C 0.168 3.832 14 H 0.071 0.929 15 N -0.711 5.711 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.927 5.927 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.137 4.137 25 C 0.140 3.860 26 H 0.074 0.926 27 C -0.160 4.160 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 6.369 -13.681 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.185 6.185 3 C 0.189 3.811 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.241 4.241 7 C -0.037 4.037 8 C -0.198 4.198 9 C 0.372 3.628 10 O -0.410 6.410 11 N -0.326 5.326 12 C -0.063 4.063 13 C 0.056 3.944 14 H 0.089 0.911 15 N -0.351 5.351 16 C -0.378 4.378 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.176 4.176 25 C 0.037 3.963 26 H 0.092 0.908 27 C -0.218 4.218 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.414 5.572 -13.890 15.032 hybrid contribution 0.139 0.729 0.949 1.205 sum -1.276 6.301 -12.941 14.450 Atomic orbital electron populations 1.22907 0.77485 1.03141 1.02162 1.86429 1.22493 1.23497 1.86076 1.19737 0.88001 0.84994 0.88375 1.67401 1.40348 0.98685 1.20605 1.22562 0.93076 0.93626 0.90684 1.21895 0.94735 0.99795 1.07634 1.21899 1.01275 0.90343 0.90202 1.19896 0.91538 0.95320 1.13009 1.17337 0.79534 0.86852 0.79116 1.90750 1.70319 1.36326 1.43624 1.48241 1.20808 1.12723 1.50801 1.23606 0.98300 0.89679 0.94745 1.21346 0.92547 0.93607 0.86913 0.91108 1.42327 1.61631 1.13660 1.17477 1.19192 1.27736 0.93675 0.97233 0.91010 1.24765 1.00443 0.96527 0.98748 1.69669 1.39949 1.17026 1.30736 0.86222 0.78066 0.80252 0.81817 1.21747 1.21713 1.20617 1.23041 0.96191 1.00042 0.98291 1.21479 0.90929 0.88192 0.95651 0.90758 1.22151 1.01567 1.00805 0.97278 0.88523 0.92215 0.92407 0.82130 0.84024 0.83278 0.89949 0.92648 0.77984 0.93385 0.90647 0.89736 0.92937 0.92053 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 101.05 1.05 1.57 16 2 O -0.28 -5.17 9.16 -35.26 -0.32 -5.50 16 3 C 0.37 6.57 7.48 -16.61 -0.12 6.45 16 4 N -0.55 -8.43 9.21 -12.98 -0.12 -8.55 16 5 C 0.16 1.91 11.17 -17.49 -0.20 1.72 16 6 C -0.22 -2.52 10.09 -39.50 -0.40 -2.92 16 7 C -0.01 -0.16 8.02 -38.89 -0.31 -0.47 16 8 C -0.19 -3.36 5.55 -104.68 -0.58 -3.94 16 9 C 0.58 11.35 7.23 -12.48 -0.09 11.26 16 10 O -0.53 -11.64 14.90 -11.98 -0.18 -11.82 16 11 N -0.59 -10.54 3.06 -164.24 -0.50 -11.04 16 12 C 0.06 1.03 4.83 -2.53 -0.01 1.02 16 13 C 0.17 3.03 3.69 -65.78 -0.24 2.78 16 14 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 15 N -0.71 -16.87 5.27 -51.35 -0.27 -17.14 16 16 C -0.25 -6.52 9.98 -15.06 -0.15 -6.67 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.14 -2.07 6.05 -24.89 -0.15 -2.22 16 25 C 0.14 2.33 3.48 -66.95 -0.23 2.10 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 C -0.16 -2.28 9.10 37.16 0.34 -1.94 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.15 1.76 5.50 -52.49 -0.29 1.47 16 34 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 35 H 0.06 0.72 7.26 -51.93 -0.38 0.34 16 36 H 0.39 10.10 7.82 -40.82 -0.32 9.78 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.11 6.75 -51.93 -0.35 0.76 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -33.74 347.12 -7.51 -41.25 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.85 Total: 9.22 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.20 Total: 8.41 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.17 Total: -63.68 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.50 Total: -17.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.74 -7.51 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989406348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.841 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds