Wall clock time and date at job start Fri Apr 10 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35432 * 116.99603 * 2 1 4 4 N 1.32228 * 119.80330 * 0.02562 * 3 2 1 5 5 C 1.31875 * 121.80286 * 179.97438 * 4 3 2 6 6 C 1.38358 * 121.18589 * 0.02562 * 5 4 3 7 7 C 1.38336 * 119.45883 * 359.73729 * 6 5 4 8 8 C 1.39993 * 118.34616 * 0.49700 * 7 6 5 9 9 C 1.47525 * 120.59564 * 179.77729 * 8 7 6 10 10 O 1.21589 * 120.00064 * 215.62529 * 9 8 7 11 11 N 1.34770 * 119.99837 * 35.63437 * 9 8 7 12 12 C 1.47429 * 125.65024 * 355.81132 * 11 9 8 13 13 C 1.54912 * 104.83289 * 155.91015 * 12 11 9 14 14 H 1.08997 * 111.00348 * 155.12385 * 13 12 11 15 15 N 1.46500 * 111.00419 * 278.94088 * 13 12 11 16 16 C 1.36929 * 119.99906 * 273.54150 * 15 13 12 17 17 H 1.08007 * 120.00037 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00143 * 179.72839 * 16 15 13 19 19 N 1.31621 * 119.99705 * 0.27278 * 18 16 15 20 20 Si 1.86800 * 120.00286 * 180.27928 * 18 16 15 21 21 H 1.48498 * 109.47346 * 89.99444 * 20 18 16 22 22 H 1.48496 * 109.47348 * 209.99823 * 20 18 16 23 23 H 1.48498 * 109.46958 * 329.99739 * 20 18 16 24 24 C 1.55165 * 101.57797 * 37.01379 * 13 12 11 25 25 C 1.47018 * 125.65027 * 175.86254 * 11 9 8 26 26 H 1.09001 * 109.88585 * 300.59469 * 25 11 9 27 27 C 1.53007 * 109.88299 * 61.60051 * 25 11 9 28 28 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47394 * 300.00103 * 1 2 3 30 30 H 1.08999 * 109.46943 * 60.00320 * 1 2 3 31 31 H 1.08002 * 119.40835 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.27020 * 180.02562 * 6 5 4 33 33 H 1.07997 * 120.83079 * 180.25908 * 7 6 5 34 34 H 1.08999 * 110.36462 * 37.07781 * 12 11 9 35 35 H 1.08998 * 110.36980 * 274.75445 * 12 11 9 36 36 H 0.97000 * 119.99686 * 93.54874 * 15 13 12 37 37 H 0.97005 * 119.99782 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.71806 * 82.86294 * 24 13 12 39 39 H 1.09004 * 110.71405 * 206.13507 * 24 13 12 40 40 H 1.08994 * 109.46920 * 58.54789 * 27 25 11 41 41 H 1.09003 * 109.46934 * 178.54884 * 27 25 11 42 42 H 1.09002 * 109.46897 * 298.54878 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8769 3.5084 0.0010 6 6 3.2524 3.6576 0.0005 7 6 4.0587 2.5335 0.0050 8 6 3.4449 1.2753 -0.0008 9 6 4.2570 0.0437 -0.0013 10 8 3.8793 -0.9333 -0.6188 11 7 5.4174 0.0014 0.6827 12 6 6.0345 1.1328 1.3987 13 6 6.9342 0.4772 2.4760 14 1 7.7461 1.1442 2.7656 15 7 6.1466 0.0751 3.6440 16 6 5.9037 0.9737 4.6482 17 1 6.2924 1.9790 4.5790 18 6 5.1527 0.5944 5.7524 19 7 4.6787 -0.6306 5.8365 20 14 4.8147 1.8225 7.1187 21 1 3.5567 2.5552 6.8258 22 1 4.6786 1.1017 8.4098 23 1 5.9403 2.7872 7.2067 24 6 7.4759 -0.7629 1.7167 25 6 6.2781 -1.1804 0.8378 26 1 5.7220 -1.9831 1.3221 27 6 6.7754 -1.6454 -0.5324 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.2483 4.3866 0.0019 32 1 3.6931 4.6436 0.0014 33 1 5.1348 2.6242 0.0089 34 1 5.2673 1.7482 1.8685 35 1 6.6363 1.7316 0.7150 36 1 5.7974 -0.8277 3.7060 37 1 4.1542 -0.8958 6.6082 38 1 8.3322 -0.4929 1.0987 39 1 7.7379 -1.5581 2.4146 40 1 7.3236 -0.8357 -1.0139 41 1 7.4331 -2.5056 -0.4075 42 1 5.9236 -1.9262 -1.1519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989406348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:09 Heat of formation + Delta-G solvation = -33.999718 kcal Electronic energy + Delta-G solvation = -25943.922728 eV Core-core repulsion = 22310.214467 eV Total energy + Delta-G solvation = -3633.708261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03243 -40.76867 -38.94016 -38.62111 -35.78191 -34.27978 -33.12488 -32.35076 -31.61369 -30.11152 -28.28323 -26.93785 -25.90332 -25.51172 -24.03587 -23.15624 -21.53355 -20.39113 -19.33397 -19.24589 -18.28920 -18.02807 -17.56648 -17.04889 -16.47500 -16.23773 -16.03077 -15.46139 -15.39476 -15.09326 -14.88816 -14.67086 -14.47359 -14.29381 -13.93921 -13.59882 -13.33838 -13.24429 -13.12291 -12.89922 -12.76644 -12.69334 -12.28551 -12.23251 -12.19878 -12.04329 -11.63679 -11.49123 -11.15677 -11.05242 -10.91577 -10.59005 -9.74054 -9.49394 -8.95934 -7.92906 -5.21548 -0.25766 0.22752 1.47189 1.48173 1.56646 1.68851 2.04376 2.08804 2.56407 2.75829 3.21098 3.37959 3.52035 3.75742 3.86889 3.92320 3.95150 3.97768 4.14137 4.24156 4.32931 4.33193 4.38277 4.48113 4.49806 4.62564 4.69814 4.75239 4.77877 4.88579 4.95517 5.07464 5.11806 5.20710 5.24092 5.37207 5.41144 5.54156 5.56045 6.16403 6.27700 6.54894 6.72878 7.15855 7.34083 8.09984 8.31530 9.30749 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005980 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.047185 B = 4680.978748 C = 5944.297260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.339 3.661 4 N -0.558 5.558 5 C 0.155 3.845 6 C -0.204 4.204 7 C -0.012 4.012 8 C -0.228 4.228 9 C 0.574 3.426 10 O -0.573 6.573 11 N -0.595 5.595 12 C 0.071 3.929 13 C 0.155 3.845 14 H 0.093 0.907 15 N -0.727 5.727 16 C -0.231 4.231 17 H 0.088 0.912 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.967 3.033 21 H -0.295 1.295 22 H -0.303 1.303 23 H -0.259 1.259 24 C -0.120 4.120 25 C 0.134 3.866 26 H 0.035 0.965 27 C -0.147 4.147 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.204 0.796 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.368 0.632 37 H 0.246 0.754 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 9.901 -14.702 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.161 3.839 4 N -0.283 5.283 5 C -0.002 4.002 6 C -0.223 4.223 7 C -0.037 4.037 8 C -0.234 4.234 9 C 0.364 3.636 10 O -0.454 6.454 11 N -0.327 5.327 12 C -0.054 4.054 13 C 0.045 3.955 14 H 0.110 0.890 15 N -0.365 5.365 16 C -0.362 4.362 17 H 0.106 0.894 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.797 3.203 21 H -0.222 1.222 22 H -0.230 1.230 23 H -0.184 1.184 24 C -0.158 4.158 25 C 0.031 3.969 26 H 0.053 0.947 27 C -0.205 4.205 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.221 0.779 32 H 0.206 0.794 33 H 0.188 0.812 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.199 0.801 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.507 9.163 -14.944 17.537 hybrid contribution -0.418 -0.277 1.180 1.282 sum 0.089 8.887 -13.764 16.384 Atomic orbital electron populations 1.23079 0.75797 1.04387 1.02546 1.86369 1.24516 1.24910 1.86560 1.20007 0.88518 0.85445 0.89979 1.67458 1.40587 0.99182 1.21055 1.23442 0.94470 0.93641 0.88610 1.22417 0.94218 1.00964 1.04727 1.22221 1.02575 0.89507 0.89428 1.20018 0.91537 0.95969 1.15862 1.17802 0.79813 0.87286 0.78744 1.90705 1.71183 1.37977 1.45516 1.48360 1.20672 1.13445 1.50192 1.23577 0.97665 0.89193 0.94924 1.21721 0.92623 0.95451 0.85685 0.88967 1.42568 1.62338 1.12561 1.19066 1.19678 1.25250 0.94344 0.96970 0.89371 1.25562 1.01851 0.98092 1.01647 1.69849 1.42061 1.19243 1.31229 0.85218 0.78124 0.78344 0.78590 1.22225 1.22976 1.18357 1.22984 0.96537 0.98456 0.97848 1.21569 0.91009 0.87188 0.97156 0.94692 1.22033 1.00941 1.02321 0.95200 0.86953 0.92445 0.91248 0.77896 0.79428 0.81241 0.91855 0.87706 0.80107 0.94478 0.86341 0.90578 0.90773 0.89892 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.38 113.37 1.18 2.21 16 2 O -0.32 -12.44 9.16 -70.77 -0.65 -13.09 16 3 C 0.34 12.40 7.48 85.13 0.64 13.03 16 4 N -0.56 -16.79 9.21 -308.00 -2.84 -19.63 16 5 C 0.15 3.28 11.17 84.71 0.95 4.22 16 6 C -0.20 -3.84 10.09 22.32 0.23 -3.61 16 7 C -0.01 -0.30 8.02 22.72 0.18 -0.11 16 8 C -0.23 -8.03 5.55 -19.91 -0.11 -8.14 16 9 C 0.57 22.97 7.23 86.69 0.63 23.60 16 10 O -0.57 -26.56 14.90 12.51 0.19 -26.38 16 11 N -0.59 -20.91 3.06 -791.78 -2.43 -23.34 16 12 C 0.07 2.15 4.83 86.86 0.42 2.57 16 13 C 0.16 5.21 3.69 46.39 0.17 5.38 16 14 H 0.09 2.77 8.13 -2.39 -0.02 2.75 16 15 N -0.73 -34.37 5.27 -316.36 -1.67 -36.04 16 16 C -0.23 -11.98 9.98 84.03 0.84 -11.14 16 17 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 19 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 20 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 C -0.12 -3.36 6.05 31.78 0.19 -3.16 16 25 C 0.13 4.42 3.48 45.34 0.16 4.57 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 C -0.15 -4.01 9.10 71.98 0.65 -3.36 16 28 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 3.34 5.50 -2.91 -0.02 3.33 16 34 H 0.06 2.19 6.57 -2.39 -0.02 2.17 16 35 H 0.11 2.18 7.26 -2.39 -0.02 2.16 16 36 H 0.37 19.87 7.82 -92.71 -0.72 19.15 16 37 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.12 2.35 7.85 -2.39 -0.02 2.33 16 39 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.34 6.75 -2.39 -0.02 1.33 16 Total: -1.00 -79.22 347.12 1.82 -77.40 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.32 Total: 31.60 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.58 Total: 22.05 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -6.65 Total: -138.87 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.46 Total: -39.46 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.22 1.82 -77.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989406348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.403 kcal (2) G-P(sol) polarization free energy of solvation -79.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds