Wall clock time and date at job start Fri Apr 10 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35421 * 116.99797 * 2 1 4 4 N 1.32234 * 119.80381 * 359.97438 * 3 2 1 5 5 C 1.31881 * 121.79819 * 180.02562 * 4 3 2 6 6 C 1.38358 * 121.19093 * 0.02562 * 5 4 3 7 7 C 1.38337 * 119.45193 * 359.73560 * 6 5 4 8 8 C 1.39986 * 118.35301 * 0.50392 * 7 6 5 9 9 C 1.47522 * 120.59799 * 179.78215 * 8 7 6 10 10 O 1.21593 * 119.99708 * 215.62039 * 9 8 7 11 11 N 1.34781 * 120.00368 * 35.62265 * 9 8 7 12 12 C 1.47427 * 125.64548 * 355.79997 * 11 9 8 13 13 C 1.54900 * 104.82937 * 155.89053 * 12 11 9 14 14 H 1.08998 * 111.01160 * 278.93203 * 13 12 11 15 15 N 1.46501 * 111.00319 * 155.08158 * 13 12 11 16 16 C 1.36939 * 120.00039 * 92.80507 * 15 13 12 17 17 H 1.08001 * 119.99813 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00225 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00077 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99800 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46995 * 90.00196 * 20 18 16 22 22 H 1.48506 * 109.46901 * 209.99704 * 20 18 16 23 23 H 1.48494 * 109.47105 * 329.99919 * 20 18 16 24 24 C 1.55161 * 101.58298 * 37.01140 * 13 12 11 25 25 C 1.47016 * 125.65003 * 175.82103 * 11 9 8 26 26 H 1.09001 * 110.01330 * 300.53104 * 25 11 9 27 27 C 1.53001 * 109.87992 * 61.62243 * 25 11 9 28 28 H 1.09002 * 109.47000 * 299.99875 * 1 2 3 29 29 H 1.09003 * 109.47129 * 59.99409 * 1 2 3 30 30 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.40883 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.27348 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.82198 * 180.25493 * 7 6 5 34 34 H 1.08997 * 110.36585 * 37.05170 * 12 11 9 35 35 H 1.09001 * 110.36664 * 274.73193 * 12 11 9 36 36 H 0.96999 * 120.00141 * 272.80991 * 15 13 12 37 37 H 0.97006 * 120.00154 * 180.02562 * 19 18 16 38 38 H 1.09007 * 110.71805 * 206.12929 * 24 13 12 39 39 H 1.08991 * 110.71987 * 82.86165 * 24 13 12 40 40 H 1.09003 * 109.47349 * 177.80640 * 27 25 11 41 41 H 1.09005 * 109.47219 * 57.80875 * 27 25 11 42 42 H 1.08997 * 109.47372 * 297.80729 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8772 3.5084 -0.0010 6 6 3.2527 3.6575 -0.0016 7 6 4.0588 2.5332 0.0039 8 6 3.4450 1.2751 -0.0009 9 6 4.2570 0.0435 -0.0001 10 8 3.8792 -0.9340 -0.6168 11 7 5.4174 0.0017 0.6841 12 6 6.0347 1.1338 1.3987 13 6 6.9337 0.4793 2.4770 14 1 6.3475 0.1815 3.3464 15 7 8.0259 1.3754 2.8648 16 6 7.8736 2.2179 3.9335 17 1 6.9482 2.2220 4.4903 18 6 8.9082 3.0674 4.3006 19 7 8.7616 3.8776 5.3275 20 14 10.5086 3.0608 3.3371 21 1 10.4238 4.0468 2.2299 22 1 11.6308 3.4245 4.2391 23 1 10.7432 1.7059 2.7765 24 6 7.4752 -0.7620 1.7197 25 6 6.2775 -1.1803 0.8410 26 1 5.7233 -1.9830 1.3275 27 6 6.7749 -1.6473 -0.5284 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.2487 4.3867 -0.0010 32 1 3.6935 4.6434 -0.0024 33 1 5.1349 2.6239 0.0078 34 1 5.2676 1.7502 1.8674 35 1 6.6369 1.7314 0.7143 36 1 8.8569 1.3720 2.3644 37 1 9.4845 4.4715 5.5838 38 1 7.7368 -1.5565 2.4187 39 1 8.3318 -0.4933 1.1016 40 1 7.4426 -2.4995 -0.4013 41 1 7.3124 -0.8343 -1.0165 42 1 5.9241 -1.9410 -1.1432 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989406349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:12 Heat of formation + Delta-G solvation = -6.413679 kcal Electronic energy + Delta-G solvation = -25469.888199 eV Core-core repulsion = 21837.376158 eV Total energy + Delta-G solvation = -3632.512041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01735 -39.62992 -37.95569 -37.33974 -34.37648 -33.24258 -31.62086 -31.34071 -30.64030 -28.94956 -27.37070 -25.77177 -24.77503 -23.51745 -23.07131 -21.67524 -20.50813 -19.29299 -18.33021 -17.81253 -17.16863 -16.97490 -16.38861 -16.00762 -15.35844 -15.06344 -14.53552 -14.23976 -14.05387 -13.91692 -13.56889 -13.43636 -13.28232 -13.19130 -12.69288 -12.61033 -12.33701 -12.26625 -11.87617 -11.84434 -11.44924 -11.33128 -11.19956 -10.89514 -10.73739 -10.43001 -10.17182 -10.06974 -9.96974 -9.71180 -9.55197 -9.08751 -8.66733 -8.39020 -7.45579 -5.89860 -3.28443 0.68273 1.15904 2.84187 2.98703 3.10768 3.28404 3.30990 3.37692 3.71100 4.11275 4.46878 4.53020 4.70949 4.84972 4.94005 4.99068 5.09297 5.11740 5.18371 5.19988 5.33441 5.35029 5.45292 5.49383 5.52305 5.65370 5.70691 5.77570 5.89349 5.92120 5.98558 6.02441 6.21421 6.23424 6.30937 6.36264 6.59244 6.66042 7.10890 7.60522 7.73088 7.84394 8.28383 8.33975 9.05022 9.76979 9.94989 11.27651 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.004378 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.028216 B = 6393.689232 C = 7570.814728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.283 6.283 3 C 0.365 3.635 4 N -0.546 5.546 5 C 0.159 3.841 6 C -0.215 4.215 7 C -0.010 4.010 8 C -0.199 4.199 9 C 0.583 3.417 10 O -0.529 6.529 11 N -0.606 5.606 12 C 0.068 3.932 13 C 0.177 3.823 14 H 0.077 0.923 15 N -0.735 5.735 16 C -0.255 4.255 17 H 0.092 0.908 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.141 4.141 25 C 0.141 3.859 26 H 0.075 0.925 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.365 0.635 37 H 0.261 0.739 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -4.665 -12.155 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.188 6.188 3 C 0.185 3.815 4 N -0.271 5.271 5 C 0.003 3.997 6 C -0.236 4.236 7 C -0.035 4.035 8 C -0.205 4.205 9 C 0.371 3.629 10 O -0.406 6.406 11 N -0.340 5.340 12 C -0.057 4.057 13 C 0.066 3.934 14 H 0.095 0.905 15 N -0.376 5.376 16 C -0.385 4.385 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.575 5.575 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.180 4.180 25 C 0.037 3.963 26 H 0.093 0.907 27 C -0.219 4.219 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.181 0.819 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.482 -5.429 -12.280 18.332 hybrid contribution 1.853 0.571 -0.539 2.013 sum -10.629 -4.858 -12.819 17.347 Atomic orbital electron populations 1.22910 0.77428 1.03097 1.02293 1.86407 1.22524 1.23577 1.86291 1.19729 0.87911 0.85040 0.88808 1.67424 1.40276 0.98675 1.20684 1.22618 0.93120 0.93612 0.90369 1.21988 0.94654 1.00147 1.06771 1.22021 1.01690 0.90268 0.89545 1.19880 0.91444 0.95215 1.14001 1.17413 0.79568 0.86929 0.79008 1.90763 1.70514 1.36315 1.43049 1.48456 1.20922 1.13097 1.51545 1.23615 0.97437 0.89295 0.95383 1.21266 0.89628 0.88422 0.94133 0.90489 1.42661 1.13295 1.45611 1.36050 1.19077 1.01634 1.12878 1.04875 0.88991 1.24673 0.97864 0.98290 0.97694 1.69697 1.33098 1.26481 1.28185 0.86589 0.84738 0.77675 0.79740 1.20941 1.21601 1.20182 1.23093 0.96698 0.99671 0.98514 1.21503 0.90726 0.87847 0.96194 0.90713 1.22147 1.01661 1.01095 0.97029 0.92268 0.92279 0.88541 0.81925 0.83681 0.82918 0.90570 0.91280 0.80203 0.92853 0.89957 0.90589 0.91906 0.92676 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.28 -4.33 9.15 -35.24 -0.32 -4.65 16 3 C 0.36 5.53 7.48 -16.61 -0.12 5.41 16 4 N -0.55 -7.24 9.21 -12.98 -0.12 -7.36 16 5 C 0.16 1.70 11.17 -17.49 -0.20 1.51 16 6 C -0.22 -2.32 10.09 -39.50 -0.40 -2.71 16 7 C -0.01 -0.12 8.02 -38.89 -0.31 -0.44 16 8 C -0.20 -3.05 5.55 -104.69 -0.58 -3.63 16 9 C 0.58 9.82 7.23 -12.47 -0.09 9.73 16 10 O -0.53 -10.16 14.91 -12.00 -0.18 -10.34 16 11 N -0.61 -9.41 3.06 -164.25 -0.50 -9.91 16 12 C 0.07 1.08 4.83 -2.53 -0.01 1.07 16 13 C 0.18 3.09 3.71 -65.78 -0.24 2.85 16 14 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 15 N -0.73 -15.68 5.05 -51.35 -0.26 -15.94 16 16 C -0.26 -6.64 10.44 -15.06 -0.16 -6.80 16 17 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 18 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 19 N -0.93 -27.69 13.97 55.49 0.78 -26.91 16 20 Si 0.88 20.67 27.74 -169.99 -4.71 15.96 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.03 6.52 56.52 0.37 -5.67 16 24 C -0.14 -2.01 6.12 -24.90 -0.15 -2.17 16 25 C 0.14 2.00 3.49 -66.96 -0.23 1.77 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 C -0.16 -2.11 9.09 37.16 0.34 -1.77 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.87 5.51 -52.49 -0.29 1.58 16 34 H 0.08 1.23 6.57 -51.93 -0.34 0.89 16 35 H 0.07 1.06 7.27 -51.93 -0.38 0.68 16 36 H 0.36 7.63 5.63 -40.82 -0.23 7.40 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.02 6.78 -51.93 -0.35 0.66 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -32.51 343.86 -7.15 -39.66 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.80 Total: 7.84 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.21 Total: 6.49 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.11 Total: -60.13 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.50 Total: -14.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.51 -7.15 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989406349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.245 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds