Wall clock time and date at job start Fri Apr 10 2020 17:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.32966 * 2 1 4 4 C 1.54918 * 110.36694 * 237.65273 * 2 1 3 5 5 C 1.55151 * 101.58131 * 204.15185 * 4 2 1 6 6 H 1.08997 * 110.87372 * 277.06552 * 5 4 2 7 7 N 1.46506 * 110.71669 * 153.86287 * 5 4 2 8 8 C 1.36938 * 119.99561 * 160.02440 * 7 5 4 9 9 H 1.07994 * 120.00183 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99538 * 179.72380 * 8 7 5 11 11 N 1.31624 * 120.00056 * 180.27577 * 10 8 7 12 12 Si 1.86798 * 120.00363 * 0.27552 * 10 8 7 13 13 H 1.48493 * 109.47173 * 89.99684 * 12 10 8 14 14 H 1.48496 * 109.47428 * 210.00196 * 12 10 8 15 15 H 1.48506 * 109.46674 * 329.99930 * 12 10 8 16 16 C 1.54324 * 102.94597 * 35.50148 * 5 4 2 17 17 N 1.47026 * 107.26969 * 337.80683 * 16 5 4 18 18 C 1.34771 * 125.64847 * 178.98011 * 17 16 5 19 19 O 1.21648 * 119.99887 * 174.42167 * 18 17 16 20 20 C 1.47085 * 120.00466 * 354.41541 * 18 17 16 21 21 C 1.39339 * 120.58075 * 84.19337 * 20 18 17 22 22 C 1.39475 * 118.95165 * 179.97438 * 21 20 18 23 23 C 1.35754 * 120.13543 * 359.97438 * 22 21 20 24 24 N 1.35436 * 121.22909 * 0.02562 * 23 22 21 25 25 C 1.46504 * 119.46909 * 179.97438 * 24 23 22 26 26 C 1.34651 * 121.05690 * 359.72423 * 24 23 22 27 27 O 1.21888 * 120.10191 * 180.28765 * 26 24 23 28 28 H 1.08999 * 109.47100 * 299.21289 * 1 2 3 29 29 H 1.08999 * 109.47270 * 59.21003 * 1 2 3 30 30 H 1.08997 * 109.47109 * 179.21287 * 1 2 3 31 31 H 1.08996 * 111.00378 * 86.07652 * 4 2 1 32 32 H 1.09003 * 110.99695 * 322.22568 * 4 2 1 33 33 H 0.96994 * 120.00453 * 340.01884 * 7 5 4 34 34 H 0.96996 * 120.00170 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.88537 * 97.21940 * 16 5 4 36 36 H 1.09000 * 109.88258 * 218.23677 * 16 5 4 37 37 H 1.07990 * 120.52577 * 359.96113 * 21 20 18 38 38 H 1.07998 * 119.92840 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.38382 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47021 * 359.97438 * 25 24 23 41 41 H 1.09003 * 109.46973 * 119.99596 * 25 24 23 42 42 H 1.09001 * 109.46953 * 239.99582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2270 5 6 3.4777 -1.2004 -0.7331 6 1 4.1968 -0.3931 -0.8719 7 7 3.9248 -2.4143 -1.4209 8 6 5.2567 -2.7307 -1.4549 9 1 5.9774 -2.0857 -0.9743 10 6 5.6798 -3.8838 -2.1016 11 7 6.9594 -4.1909 -2.1296 12 14 4.4332 -4.9998 -2.9321 13 1 4.2499 -4.5738 -4.3428 14 1 4.9231 -6.4012 -2.8979 15 1 3.1353 -4.9116 -2.2158 16 6 3.2494 -1.4761 0.7680 17 7 2.0431 -0.7374 1.1689 18 6 1.4973 -0.7341 2.4012 19 8 0.5547 -0.0054 2.6470 20 6 2.0412 -1.6115 3.4489 21 6 3.1401 -1.2131 4.2073 22 6 3.6277 -2.0717 5.1923 23 6 3.0345 -3.2746 5.4025 24 7 1.9661 -3.6683 4.6691 25 6 1.3562 -4.9749 4.9281 26 6 1.4525 -2.8759 3.7092 27 8 0.4872 -3.2455 3.0631 28 1 -0.3633 0.5016 0.8970 29 1 -0.3634 0.5260 -0.8828 30 1 -0.3633 -1.0275 -0.0141 31 1 2.1398 -0.1284 -2.1000 32 1 1.4510 -1.6494 -1.4393 33 1 3.2775 -2.9938 -1.8521 34 1 7.2551 -4.9964 -2.5818 35 1 3.1013 -2.5438 0.9306 36 1 4.1077 -1.1292 1.3434 37 1 3.6071 -0.2547 4.0350 38 1 4.4789 -1.7790 5.7891 39 1 3.4223 -3.9301 6.1682 40 1 1.8946 -5.4739 5.7338 41 1 0.3140 -4.8385 5.2170 42 1 1.4064 -5.5845 4.0259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989693740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:24 Heat of formation + Delta-G solvation = -5.520789 kcal Electronic energy + Delta-G solvation = -25700.291321 eV Core-core repulsion = 22067.817998 eV Total energy + Delta-G solvation = -3632.473322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49952 -39.72310 -37.35680 -37.00123 -34.69318 -34.27131 -31.76305 -31.50983 -29.93071 -28.86030 -27.90933 -25.51354 -24.96216 -23.54523 -22.83319 -21.74290 -20.37424 -19.32426 -17.73954 -17.60370 -17.41363 -16.85823 -16.36669 -16.10684 -15.67521 -15.03238 -14.64718 -14.45092 -13.93017 -13.71402 -13.35402 -13.34831 -13.25520 -12.97267 -12.69195 -12.57119 -12.36885 -12.09080 -12.01772 -11.99206 -11.79036 -11.45506 -11.13476 -10.84323 -10.65379 -10.38311 -10.20714 -10.15283 -10.07092 -9.66363 -9.47758 -9.02569 -8.29470 -8.08843 -7.40012 -5.85517 -3.22824 0.48481 1.73419 2.26806 2.90539 3.20503 3.33735 3.37915 3.41576 3.54116 4.26273 4.41116 4.52427 4.61673 4.76243 4.88268 5.01302 5.05147 5.05334 5.13473 5.17077 5.34364 5.42997 5.52889 5.61437 5.67628 5.78135 5.79716 5.83286 5.96080 5.97374 6.10256 6.18718 6.26346 6.37353 6.44528 6.48417 6.69829 6.80709 6.84665 7.81117 7.89381 7.90121 8.33448 8.41101 9.10388 9.83077 10.01826 11.32120 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.005244 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.815009 B = 5338.403637 C = 6506.963202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.139 4.139 5 C 0.178 3.822 6 H 0.075 0.925 7 N -0.738 5.738 8 C -0.251 4.251 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.930 5.930 12 Si 0.881 3.119 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.079 3.921 17 N -0.602 5.602 18 C 0.604 3.396 19 O -0.539 6.539 20 C -0.246 4.246 21 C 0.023 3.977 22 C -0.232 4.232 23 C 0.146 3.854 24 N -0.495 5.495 25 C 0.063 3.937 26 C 0.532 3.468 27 O -0.534 6.534 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.364 0.636 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 3.411 15.991 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.178 4.178 5 C 0.066 3.934 6 H 0.093 0.907 7 N -0.380 5.380 8 C -0.380 4.380 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.577 5.577 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.217 1.217 15 H -0.202 1.202 16 C -0.047 4.047 17 N -0.335 5.335 18 C 0.392 3.608 19 O -0.416 6.416 20 C -0.254 4.254 21 C 0.000 4.000 22 C -0.255 4.255 23 C 0.017 3.983 24 N -0.205 5.205 25 C -0.079 4.079 26 C 0.333 3.667 27 O -0.414 6.414 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.198 0.802 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.578 3.470 15.748 18.265 hybrid contribution -0.467 -1.134 -0.447 1.305 sum -9.045 2.336 15.301 17.927 Atomic orbital electron populations 1.22139 0.94297 1.02709 1.03070 1.21849 0.94883 0.95357 0.84355 0.90608 1.23180 0.97534 1.00457 0.96655 1.21147 0.93324 0.90432 0.88465 0.90674 1.42748 1.05881 1.24876 1.64449 1.19074 0.82362 1.06368 1.30239 0.88954 1.24660 0.95633 0.97965 1.00405 1.69697 1.12988 1.27060 1.47944 0.86601 0.81339 0.80903 0.80040 1.20860 1.21664 1.20238 1.23168 0.85210 0.96665 0.99683 1.48536 1.28603 1.47967 1.08395 1.16995 0.81891 0.81319 0.80643 1.90712 1.28191 1.42022 1.80719 1.20855 1.02553 0.97373 1.04591 1.21776 0.89950 0.98370 0.89891 1.20562 1.05403 0.95060 1.04509 1.22141 0.86361 0.96488 0.93354 1.45372 1.26404 1.18278 1.30459 1.22198 0.99968 0.82203 1.03489 1.16668 0.84881 0.84786 0.80387 1.90953 1.27214 1.74610 1.48670 0.89938 0.92177 0.92635 0.89765 0.90691 0.80214 0.92953 0.91322 0.91975 0.84293 0.83013 0.81681 0.89119 0.89942 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.77 37.16 0.33 -2.21 16 2 C 0.14 2.16 3.74 -66.41 -0.25 1.92 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.21 6.11 -24.58 -0.15 -2.36 16 5 C 0.18 3.31 3.59 -66.10 -0.24 3.07 16 6 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 7 N -0.74 -16.89 4.98 -51.65 -0.26 -17.15 16 8 C -0.25 -6.77 10.46 -15.06 -0.16 -6.93 16 9 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.77 27.74 -169.99 -4.72 17.05 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.56 6.51 56.52 0.37 -6.19 16 16 C 0.08 1.41 6.23 -3.06 -0.02 1.39 16 17 N -0.60 -10.45 3.24 -164.42 -0.53 -10.98 16 18 C 0.60 11.08 6.56 -12.68 -0.08 11.00 16 19 O -0.54 -11.05 14.93 5.23 0.08 -10.97 16 20 C -0.25 -3.93 4.86 -104.50 -0.51 -4.44 16 21 C 0.02 0.27 9.91 -38.71 -0.38 -0.12 16 22 C -0.23 -1.95 9.99 -40.01 -0.40 -2.35 16 23 C 0.15 1.14 10.28 -16.85 -0.17 0.97 16 24 N -0.50 -5.64 2.98 -126.76 -0.38 -6.01 16 25 C 0.06 0.51 10.04 59.85 0.60 1.11 16 26 C 0.53 8.76 7.44 -14.92 -0.11 8.65 16 27 O -0.53 -10.85 16.55 5.02 0.08 -10.77 16 28 H 0.08 1.41 5.93 -51.93 -0.31 1.11 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.36 8.38 5.57 -40.82 -0.23 8.15 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.17 0.51 7.79 -52.49 -0.41 0.11 16 40 H 0.09 0.35 7.70 -51.93 -0.40 -0.05 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -37.15 349.12 -7.32 -44.46 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.99 Total: 6.79 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.64 Total: 9.87 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.39 Total: -61.70 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.15 -7.32 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989693740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.941 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds