Wall clock time and date at job start Fri Apr 10 2020 17:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.32966 * 2 1 4 4 C 1.54918 * 110.36694 * 237.65273 * 2 1 3 5 5 C 1.55151 * 101.58131 * 204.15185 * 4 2 1 6 6 H 1.08997 * 110.87372 * 277.06552 * 5 4 2 7 7 N 1.46506 * 110.71669 * 153.86287 * 5 4 2 8 8 C 1.36938 * 119.99561 * 160.02440 * 7 5 4 9 9 H 1.07994 * 120.00183 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99538 * 179.72380 * 8 7 5 11 11 N 1.31624 * 120.00056 * 180.27577 * 10 8 7 12 12 Si 1.86798 * 120.00363 * 0.27552 * 10 8 7 13 13 H 1.48493 * 109.47173 * 89.99684 * 12 10 8 14 14 H 1.48496 * 109.47428 * 210.00196 * 12 10 8 15 15 H 1.48506 * 109.46674 * 329.99930 * 12 10 8 16 16 C 1.54324 * 102.94597 * 35.50148 * 5 4 2 17 17 N 1.47026 * 107.26969 * 337.80683 * 16 5 4 18 18 C 1.34771 * 125.64847 * 178.98011 * 17 16 5 19 19 O 1.21648 * 119.99887 * 174.42167 * 18 17 16 20 20 C 1.47085 * 120.00466 * 354.41541 * 18 17 16 21 21 C 1.39339 * 120.58075 * 84.19337 * 20 18 17 22 22 C 1.39475 * 118.95165 * 179.97438 * 21 20 18 23 23 C 1.35754 * 120.13543 * 359.97438 * 22 21 20 24 24 N 1.35436 * 121.22909 * 0.02562 * 23 22 21 25 25 C 1.46504 * 119.46909 * 179.97438 * 24 23 22 26 26 C 1.34651 * 121.05690 * 359.72423 * 24 23 22 27 27 O 1.21888 * 120.10191 * 180.28765 * 26 24 23 28 28 H 1.08999 * 109.47100 * 299.21289 * 1 2 3 29 29 H 1.08999 * 109.47270 * 59.21003 * 1 2 3 30 30 H 1.08997 * 109.47109 * 179.21287 * 1 2 3 31 31 H 1.08996 * 111.00378 * 86.07652 * 4 2 1 32 32 H 1.09003 * 110.99695 * 322.22568 * 4 2 1 33 33 H 0.96994 * 120.00453 * 340.01884 * 7 5 4 34 34 H 0.96996 * 120.00170 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.88537 * 97.21940 * 16 5 4 36 36 H 1.09000 * 109.88258 * 218.23677 * 16 5 4 37 37 H 1.07990 * 120.52577 * 359.96113 * 21 20 18 38 38 H 1.07998 * 119.92840 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.38382 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47021 * 359.97438 * 25 24 23 41 41 H 1.09003 * 109.46973 * 119.99596 * 25 24 23 42 42 H 1.09001 * 109.46953 * 239.99582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2270 5 6 3.4777 -1.2004 -0.7331 6 1 4.1968 -0.3931 -0.8719 7 7 3.9248 -2.4143 -1.4209 8 6 5.2567 -2.7307 -1.4549 9 1 5.9774 -2.0857 -0.9743 10 6 5.6798 -3.8838 -2.1016 11 7 6.9594 -4.1909 -2.1296 12 14 4.4332 -4.9998 -2.9321 13 1 4.2499 -4.5738 -4.3428 14 1 4.9231 -6.4012 -2.8979 15 1 3.1353 -4.9116 -2.2158 16 6 3.2494 -1.4761 0.7680 17 7 2.0431 -0.7374 1.1689 18 6 1.4973 -0.7341 2.4012 19 8 0.5547 -0.0054 2.6470 20 6 2.0412 -1.6115 3.4489 21 6 3.1401 -1.2131 4.2073 22 6 3.6277 -2.0717 5.1923 23 6 3.0345 -3.2746 5.4025 24 7 1.9661 -3.6683 4.6691 25 6 1.3562 -4.9749 4.9281 26 6 1.4525 -2.8759 3.7092 27 8 0.4872 -3.2455 3.0631 28 1 -0.3633 0.5016 0.8970 29 1 -0.3634 0.5260 -0.8828 30 1 -0.3633 -1.0275 -0.0141 31 1 2.1398 -0.1284 -2.1000 32 1 1.4510 -1.6494 -1.4393 33 1 3.2775 -2.9938 -1.8521 34 1 7.2551 -4.9964 -2.5818 35 1 3.1013 -2.5438 0.9306 36 1 4.1077 -1.1292 1.3434 37 1 3.6071 -0.2547 4.0350 38 1 4.4789 -1.7790 5.7891 39 1 3.4223 -3.9301 6.1682 40 1 1.8946 -5.4739 5.7338 41 1 0.3140 -4.8385 5.2170 42 1 1.4064 -5.5845 4.0259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989693740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:24 Heat of formation + Delta-G solvation = -32.746370 kcal Electronic energy + Delta-G solvation = -25701.471911 eV Core-core repulsion = 22067.817998 eV Total energy + Delta-G solvation = -3633.653912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.49626 -41.04522 -38.78163 -38.11240 -36.09132 -35.61765 -33.53672 -32.94666 -30.94870 -30.50760 -28.67739 -26.82648 -26.14731 -25.32101 -23.76504 -23.04758 -21.95423 -20.56607 -19.69381 -18.59936 -18.48346 -17.99879 -17.56315 -17.21322 -16.90361 -16.48316 -16.15874 -15.61656 -15.42929 -15.07845 -14.96117 -14.60071 -14.46948 -14.25889 -13.79510 -13.71625 -13.59852 -13.36226 -13.19334 -13.10060 -13.03970 -12.92034 -12.84523 -12.43577 -12.22149 -12.01968 -11.83947 -11.62379 -11.33304 -11.11769 -11.07426 -10.73793 -9.70040 -9.39833 -9.04554 -8.03461 -5.38024 -0.38717 0.81307 1.22900 1.38145 1.38572 1.44931 1.76210 2.00851 2.46251 2.51840 3.25138 3.30586 3.57723 3.64631 3.74755 3.77418 3.88620 4.02089 4.08359 4.14218 4.25162 4.33571 4.37838 4.38039 4.43500 4.66090 4.70972 4.72832 4.78820 4.83303 4.96044 5.03523 5.05393 5.18629 5.19074 5.25023 5.49846 5.53424 5.76259 5.92375 6.20332 6.45069 6.83661 7.03304 7.07343 7.78852 7.97276 9.17105 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.005244 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.815009 B = 5338.403637 C = 6506.963202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.097 0.903 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.084 0.916 7 N -0.741 5.741 8 C -0.230 4.230 9 H 0.070 0.930 10 C -0.053 4.053 11 N -0.976 5.976 12 Si 0.943 3.057 13 H -0.276 1.276 14 H -0.296 1.296 15 H -0.264 1.264 16 C 0.095 3.905 17 N -0.604 5.604 18 C 0.601 3.399 19 O -0.573 6.573 20 C -0.312 4.312 21 C 0.044 3.956 22 C -0.237 4.237 23 C 0.166 3.834 24 N -0.493 5.493 25 C 0.056 3.944 26 C 0.514 3.486 27 O -0.600 6.600 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.365 0.635 34 H 0.258 0.742 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.197 0.803 39 H 0.229 0.771 40 H 0.147 0.853 41 H 0.075 0.925 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 3.399 17.834 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.031 3.969 3 H 0.115 0.885 4 C -0.165 4.165 5 C 0.061 3.939 6 H 0.102 0.898 7 N -0.383 5.383 8 C -0.360 4.360 9 H 0.088 0.912 10 C -0.245 4.245 11 N -0.626 5.626 12 Si 0.771 3.229 13 H -0.202 1.202 14 H -0.223 1.223 15 H -0.190 1.190 16 C -0.031 4.031 17 N -0.337 5.337 18 C 0.390 3.610 19 O -0.453 6.453 20 C -0.319 4.319 21 C 0.021 3.979 22 C -0.258 4.258 23 C 0.037 3.963 24 N -0.200 5.200 25 C -0.084 4.084 26 C 0.318 3.682 27 O -0.487 6.487 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.198 0.802 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.171 0.829 38 H 0.214 0.786 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.939 3.484 17.632 19.648 hybrid contribution -0.571 -1.082 -0.806 1.465 sum -8.510 2.402 16.826 19.008 Atomic orbital electron populations 1.22039 0.94227 1.01389 1.03618 1.22056 0.94986 0.96228 0.83658 0.88477 1.23122 0.95127 1.00600 0.97681 1.21359 0.95103 0.88956 0.88474 0.89844 1.42748 1.04332 1.26256 1.65004 1.19060 0.83684 1.05255 1.28043 0.91213 1.25337 0.97226 0.99851 1.02109 1.69845 1.15004 1.27856 1.49933 0.85595 0.79477 0.78504 0.79292 1.20154 1.22310 1.18965 1.22814 0.85900 0.95091 0.99271 1.48617 1.28391 1.47826 1.08834 1.17478 0.81309 0.81039 0.81219 1.90664 1.29591 1.43626 1.81459 1.20693 1.06074 0.98212 1.06963 1.22186 0.87759 0.99185 0.88807 1.21156 1.06358 0.94590 1.03709 1.23265 0.83664 0.96984 0.92387 1.45502 1.26769 1.18544 1.29172 1.22484 1.00640 0.80761 1.04513 1.16894 0.84605 0.85545 0.81187 1.90888 1.30130 1.76120 1.51592 0.91845 0.88994 0.94901 0.86953 0.91638 0.80177 0.93307 0.94232 0.90986 0.82860 0.78582 0.75422 0.83483 0.90640 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 8.77 71.98 0.63 -4.17 16 2 C 0.13 4.07 3.74 45.47 0.17 4.24 16 3 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 4 C -0.13 -3.85 6.11 31.99 0.20 -3.65 16 5 C 0.17 6.23 3.59 46.18 0.17 6.39 16 6 H 0.08 2.94 8.12 -2.39 -0.02 2.92 16 7 N -0.74 -33.55 4.98 -317.33 -1.58 -35.13 16 8 C -0.23 -12.43 10.46 84.03 0.88 -11.56 16 9 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 10 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 11 N -0.98 -60.39 13.97 21.65 0.30 -60.09 16 12 Si 0.94 45.14 27.74 68.60 1.90 47.04 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.26 -11.97 6.51 99.48 0.65 -11.32 16 16 C 0.10 3.44 6.23 86.73 0.54 3.98 16 17 N -0.60 -21.33 3.24 -792.35 -2.57 -23.90 16 18 C 0.60 22.91 6.56 86.57 0.57 23.48 16 19 O -0.57 -24.70 14.93 -4.18 -0.06 -24.77 16 20 C -0.31 -10.18 4.86 -19.79 -0.10 -10.27 16 21 C 0.04 0.95 9.91 22.83 0.23 1.18 16 22 C -0.24 -2.96 9.99 21.99 0.22 -2.74 16 23 C 0.17 1.83 10.28 83.56 0.86 2.69 16 24 N -0.49 -10.38 2.98 -673.18 -2.00 -12.38 16 25 C 0.06 0.82 10.04 127.77 1.28 2.10 16 26 C 0.51 17.47 7.44 85.16 0.63 18.11 16 27 O -0.60 -26.26 16.55 -4.95 -0.08 -26.35 16 28 H 0.06 2.24 5.93 -2.39 -0.01 2.22 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 33 H 0.36 16.44 5.57 -92.71 -0.52 15.92 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.15 2.74 8.06 -2.92 -0.02 2.72 16 38 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.23 -0.37 7.79 -2.91 -0.02 -0.39 16 40 H 0.15 0.41 7.70 -2.39 -0.02 0.39 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -88.30 349.12 3.10 -85.20 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.46 Total: 23.17 kcal Atomic # 6 Polarization: 20.46 SS G_CDS: 6.74 Total: 27.20 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.85 Total: -131.50 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.14 Total: -51.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -88.30 3.10 -85.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989693740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.452 kcal (2) G-P(sol) polarization free energy of solvation -88.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds