Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.41264 * 2 1 4 4 C 1.55129 * 110.34609 * 122.44514 * 2 1 3 5 5 C 1.55159 * 101.48377 * 156.05944 * 4 2 1 6 6 H 1.08998 * 110.86977 * 82.77035 * 5 4 2 7 7 N 1.46500 * 110.72099 * 205.97261 * 5 4 2 8 8 C 1.36932 * 119.99778 * 199.98231 * 7 5 4 9 9 H 1.08000 * 120.00478 * 359.97438 * 8 7 5 10 10 C 1.38824 * 119.99819 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99729 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99787 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47603 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46980 * 120.00326 * 12 10 8 15 15 H 1.48508 * 109.47064 * 239.99579 * 12 10 8 16 16 C 1.54320 * 102.94349 * 324.33664 * 5 4 2 17 17 N 1.47018 * 107.27210 * 22.19183 * 16 5 4 18 18 C 1.34784 * 125.64722 * 181.02498 * 17 16 5 19 19 O 1.21283 * 119.99667 * 180.02562 * 18 17 16 20 20 C 1.50693 * 119.99987 * 0.02568 * 18 17 16 21 21 N 1.46497 * 109.47119 * 180.02562 * 20 18 17 22 22 C 1.35763 * 119.62530 * 269.72741 * 21 20 18 23 23 C 1.35353 * 120.70025 * 179.71692 * 22 21 20 24 24 C 1.40192 * 119.94910 * 0.52986 * 23 22 21 25 25 C 1.36400 * 119.26482 * 359.74812 * 24 23 22 26 26 C 1.34662 * 119.62727 * 89.99885 * 21 20 18 27 27 O 1.22067 * 119.98527 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.47027 * 180.84195 * 1 2 3 29 29 H 1.09002 * 109.47294 * 300.83611 * 1 2 3 30 30 H 1.09001 * 109.47446 * 60.83803 * 1 2 3 31 31 H 1.09004 * 111.19138 * 37.95708 * 4 2 1 32 32 H 1.08993 * 110.94122 * 274.05606 * 4 2 1 33 33 H 0.96996 * 119.99540 * 19.97276 * 7 5 4 34 34 H 0.96995 * 119.99841 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.88205 * 262.77471 * 16 5 4 36 36 H 1.09004 * 110.01290 * 141.68524 * 16 5 4 37 37 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 38 38 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 39 39 H 1.07995 * 119.64744 * 0.02562 * 22 21 20 40 40 H 1.08006 * 120.02437 * 180.27645 * 23 22 21 41 41 H 1.08004 * 120.36530 * 179.76946 * 24 23 22 42 42 H 1.08001 * 120.34491 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4798 -1.1972 0.7331 6 1 4.1953 -0.3869 0.8727 7 7 3.9322 -2.4098 1.4195 8 6 5.2654 -2.7204 1.4531 9 1 5.9833 -2.0718 0.9733 10 6 5.6942 -3.8692 2.1040 11 7 4.8191 -4.6600 2.6884 12 14 7.5127 -4.2934 2.1493 13 1 8.2824 -3.2513 1.4234 14 1 7.9718 -4.3544 3.5603 15 1 7.7298 -5.6116 1.5008 16 6 3.2525 -1.4722 -0.7683 17 7 2.0431 -0.7382 -1.1683 18 6 1.4972 -0.7361 -2.4007 19 8 0.4936 -0.0906 -2.6182 20 6 2.1336 -1.5356 -3.5081 21 7 1.3574 -1.3685 -4.7393 22 6 0.3424 -2.2271 -5.0144 23 6 -0.3925 -2.0895 -6.1427 24 6 -0.1007 -1.0583 -7.0465 25 6 0.9230 -0.2000 -6.7711 26 6 1.6624 -0.3684 -5.5880 27 8 2.5814 0.3922 -5.3294 28 1 -0.3633 -1.0276 0.0151 29 1 -0.3634 0.5268 0.8824 30 1 -0.3634 0.5008 -0.8974 31 1 1.4550 -1.6555 1.4390 32 1 2.1373 -0.1328 2.1016 33 1 3.2873 -2.9924 1.8502 34 1 5.1187 -5.4624 3.1434 35 1 3.1090 -2.5404 -0.9319 36 1 4.1076 -1.1205 -1.3456 37 1 3.1524 -1.1839 -3.6709 38 1 2.1530 -2.5895 -3.2306 39 1 0.1157 -3.0253 -4.3232 40 1 -1.2004 -2.7760 -6.3485 41 1 -0.6804 -0.9445 -7.9507 42 1 1.1632 0.6003 -7.4554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989775332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = -9.678139 kcal Electronic energy + Delta-G solvation = -25108.394169 eV Core-core repulsion = 21475.740570 eV Total energy + Delta-G solvation = -3632.653599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56040 -39.86608 -37.46181 -36.93628 -34.67562 -34.24210 -31.96786 -31.45445 -30.02757 -28.63802 -28.12056 -25.42992 -24.21367 -23.90388 -23.08580 -21.68553 -20.38073 -19.10410 -17.67464 -17.49544 -17.32717 -16.95576 -16.44120 -16.26416 -15.44326 -15.00595 -14.76842 -14.60155 -14.27267 -13.94270 -13.76556 -13.30781 -13.23826 -12.82411 -12.67824 -12.46290 -12.17950 -12.05199 -12.00929 -11.90928 -11.81576 -11.31890 -11.10642 -10.87495 -10.76267 -10.53538 -10.36991 -10.08848 -10.03207 -9.82889 -9.50117 -9.08297 -8.44929 -8.09514 -7.18365 -5.92699 -3.24099 0.69395 1.77797 2.33894 2.61359 3.11726 3.34400 3.41475 3.42901 3.61291 4.39029 4.40610 4.47516 4.51278 4.71805 4.94821 4.99612 5.04931 5.07987 5.14283 5.15620 5.23673 5.41500 5.50379 5.59258 5.75825 5.77963 5.80372 5.89130 5.99712 6.05745 6.10929 6.12846 6.31784 6.34844 6.38090 6.42165 6.60510 6.76888 6.94469 7.57053 7.65445 7.94726 8.18630 8.24874 9.37030 9.89731 10.24695 11.29156 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.003442 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.211958 B = 8133.830151 C = 8943.893088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.173 3.827 6 H 0.067 0.933 7 N -0.713 5.713 8 C -0.251 4.251 9 H 0.074 0.926 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.067 3.933 17 N -0.604 5.604 18 C 0.518 3.482 19 O -0.538 6.538 20 C 0.072 3.928 21 N -0.478 5.478 22 C 0.147 3.853 23 C -0.238 4.238 24 C -0.015 4.015 25 C -0.244 4.244 26 C 0.518 3.482 27 O -0.551 6.551 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 4.130 -14.258 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.060 3.940 6 H 0.085 0.915 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.092 0.908 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.058 4.058 17 N -0.338 5.338 18 C 0.305 3.695 19 O -0.416 6.416 20 C -0.053 4.053 21 N -0.187 5.187 22 C 0.020 3.980 23 C -0.261 4.261 24 C -0.037 4.037 25 C -0.266 4.266 26 C 0.321 3.679 27 O -0.433 6.433 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.222 0.778 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.093 4.932 -14.222 18.699 hybrid contribution 0.802 -0.698 0.212 1.084 sum -10.291 4.234 -14.011 17.892 Atomic orbital electron populations 1.22152 0.94238 1.02422 1.03162 1.21944 0.94822 0.95403 0.84399 0.90792 1.23179 0.97641 1.00317 0.96250 1.21162 0.93239 0.91197 0.88366 0.91498 1.42390 1.06035 1.23762 1.63117 1.19306 0.83859 1.05379 1.29587 0.90816 1.24779 0.97829 0.97531 1.00295 1.69667 1.32583 1.15221 1.40140 0.86117 0.84663 0.77999 0.77375 1.20387 1.21738 1.21743 1.23443 0.85029 0.96556 1.00818 1.48576 1.28543 1.48202 1.08488 1.20166 0.84458 0.82372 0.82538 1.90654 1.25371 1.43907 1.81702 1.21830 0.98067 1.02725 0.82674 1.45088 1.28241 1.26215 1.19201 1.21960 0.86561 0.92558 0.96960 1.20600 1.04921 1.03963 0.96602 1.21413 0.93511 0.91268 0.97521 1.22068 1.00798 1.04842 0.98890 1.17151 0.85742 0.80430 0.84616 1.90965 1.31991 1.43515 1.76867 0.92819 0.92234 0.89930 0.90400 0.90037 0.77839 0.93339 0.90639 0.91938 0.85271 0.85974 0.82241 0.83777 0.84914 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.71 37.16 0.32 -1.90 16 2 C 0.14 1.98 3.77 -66.30 -0.25 1.73 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.02 6.12 -24.46 -0.15 -2.17 16 5 C 0.17 3.06 3.59 -66.10 -0.24 2.82 16 6 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 7 N -0.71 -16.12 5.18 -51.65 -0.27 -16.39 16 8 C -0.25 -6.39 9.98 -15.06 -0.15 -6.55 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 12 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.07 1.07 6.24 -3.07 -0.02 1.05 16 17 N -0.60 -9.14 3.24 -162.92 -0.53 -9.67 16 18 C 0.52 8.00 7.70 -10.99 -0.08 7.92 16 19 O -0.54 -9.66 14.08 5.56 0.08 -9.58 16 20 C 0.07 0.91 5.01 -5.20 -0.03 0.89 16 21 N -0.48 -6.08 2.07 -121.07 -0.25 -6.33 16 22 C 0.15 1.38 10.28 -16.84 -0.17 1.21 16 23 C -0.24 -1.91 10.01 -39.88 -0.40 -2.31 16 24 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 25 C -0.24 -2.87 9.99 -39.38 -0.39 -3.26 16 26 C 0.52 7.83 7.40 -15.45 -0.11 7.71 16 27 O -0.55 -10.44 16.64 4.86 0.08 -10.36 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 31 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.39 9.37 7.71 -40.82 -0.31 9.06 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.08 1.24 8.03 -51.92 -0.42 0.83 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.13 1.72 7.38 -51.93 -0.38 1.33 16 38 H 0.12 1.16 8.01 -51.93 -0.42 0.74 16 39 H 0.16 1.03 8.03 -52.49 -0.42 0.61 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -33.44 351.67 -8.07 -41.51 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.02 Total: 8.67 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -2.17 Total: 6.32 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.32 Total: -58.04 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.16 Total: -19.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.44 -8.07 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.835 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds