Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.41264 * 2 1 4 4 C 1.55129 * 110.34609 * 122.44514 * 2 1 3 5 5 C 1.55159 * 101.48377 * 156.05944 * 4 2 1 6 6 H 1.08998 * 110.86977 * 82.77035 * 5 4 2 7 7 N 1.46500 * 110.72099 * 205.97261 * 5 4 2 8 8 C 1.36932 * 119.99778 * 199.98231 * 7 5 4 9 9 H 1.08000 * 120.00478 * 359.97438 * 8 7 5 10 10 C 1.38824 * 119.99819 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99729 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99787 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47603 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46980 * 120.00326 * 12 10 8 15 15 H 1.48508 * 109.47064 * 239.99579 * 12 10 8 16 16 C 1.54320 * 102.94349 * 324.33664 * 5 4 2 17 17 N 1.47018 * 107.27210 * 22.19183 * 16 5 4 18 18 C 1.34784 * 125.64722 * 181.02498 * 17 16 5 19 19 O 1.21283 * 119.99667 * 180.02562 * 18 17 16 20 20 C 1.50693 * 119.99987 * 0.02568 * 18 17 16 21 21 N 1.46497 * 109.47119 * 180.02562 * 20 18 17 22 22 C 1.35763 * 119.62530 * 269.72741 * 21 20 18 23 23 C 1.35353 * 120.70025 * 179.71692 * 22 21 20 24 24 C 1.40192 * 119.94910 * 0.52986 * 23 22 21 25 25 C 1.36400 * 119.26482 * 359.74812 * 24 23 22 26 26 C 1.34662 * 119.62727 * 89.99885 * 21 20 18 27 27 O 1.22067 * 119.98527 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.47027 * 180.84195 * 1 2 3 29 29 H 1.09002 * 109.47294 * 300.83611 * 1 2 3 30 30 H 1.09001 * 109.47446 * 60.83803 * 1 2 3 31 31 H 1.09004 * 111.19138 * 37.95708 * 4 2 1 32 32 H 1.08993 * 110.94122 * 274.05606 * 4 2 1 33 33 H 0.96996 * 119.99540 * 19.97276 * 7 5 4 34 34 H 0.96995 * 119.99841 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.88205 * 262.77471 * 16 5 4 36 36 H 1.09004 * 110.01290 * 141.68524 * 16 5 4 37 37 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 38 38 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 39 39 H 1.07995 * 119.64744 * 0.02562 * 22 21 20 40 40 H 1.08006 * 120.02437 * 180.27645 * 23 22 21 41 41 H 1.08004 * 120.36530 * 179.76946 * 24 23 22 42 42 H 1.08001 * 120.34491 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4798 -1.1972 0.7331 6 1 4.1953 -0.3869 0.8727 7 7 3.9322 -2.4098 1.4195 8 6 5.2654 -2.7204 1.4531 9 1 5.9833 -2.0718 0.9733 10 6 5.6942 -3.8692 2.1040 11 7 4.8191 -4.6600 2.6884 12 14 7.5127 -4.2934 2.1493 13 1 8.2824 -3.2513 1.4234 14 1 7.9718 -4.3544 3.5603 15 1 7.7298 -5.6116 1.5008 16 6 3.2525 -1.4722 -0.7683 17 7 2.0431 -0.7382 -1.1683 18 6 1.4972 -0.7361 -2.4007 19 8 0.4936 -0.0906 -2.6182 20 6 2.1336 -1.5356 -3.5081 21 7 1.3574 -1.3685 -4.7393 22 6 0.3424 -2.2271 -5.0144 23 6 -0.3925 -2.0895 -6.1427 24 6 -0.1007 -1.0583 -7.0465 25 6 0.9230 -0.2000 -6.7711 26 6 1.6624 -0.3684 -5.5880 27 8 2.5814 0.3922 -5.3294 28 1 -0.3633 -1.0276 0.0151 29 1 -0.3634 0.5268 0.8824 30 1 -0.3634 0.5008 -0.8974 31 1 1.4550 -1.6555 1.4390 32 1 2.1373 -0.1328 2.1016 33 1 3.2873 -2.9924 1.8502 34 1 5.1187 -5.4624 3.1434 35 1 3.1090 -2.5404 -0.9319 36 1 4.1076 -1.1205 -1.3456 37 1 3.1524 -1.1839 -3.6709 38 1 2.1530 -2.5895 -3.2306 39 1 0.1157 -3.0253 -4.3232 40 1 -1.2004 -2.7760 -6.3485 41 1 -0.6804 -0.9445 -7.9507 42 1 1.1632 0.6003 -7.4554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989775332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = -31.402311 kcal Electronic energy + Delta-G solvation = -25109.336200 eV Core-core repulsion = 21475.740570 eV Total energy + Delta-G solvation = -3633.595629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52903 -41.08618 -38.78818 -37.96383 -36.00352 -35.53124 -33.35972 -32.99884 -30.86151 -30.15147 -29.23204 -26.67490 -25.84896 -24.91056 -24.10547 -22.86868 -21.80330 -20.30547 -19.22169 -18.60046 -18.37783 -18.14390 -17.53699 -17.29020 -16.80339 -16.32965 -16.06340 -15.58506 -15.43683 -15.35218 -15.10778 -14.73276 -14.49074 -14.29477 -13.75348 -13.43139 -13.32175 -13.24892 -13.08544 -12.98930 -12.92618 -12.84383 -12.73815 -12.37067 -12.18466 -12.06790 -11.73103 -11.60175 -11.37693 -11.09608 -11.02591 -10.61204 -9.72041 -9.07578 -8.98451 -7.94764 -5.24455 -0.09526 0.92705 1.37972 1.41332 1.49995 1.52295 1.60556 1.99350 2.56567 2.70225 3.26997 3.36741 3.59173 3.73319 3.77740 3.83157 3.85901 3.99324 4.11172 4.16014 4.20218 4.28560 4.35960 4.46720 4.50422 4.51530 4.71771 4.75059 4.85027 5.00228 5.08992 5.13006 5.16729 5.20625 5.30628 5.37727 5.47919 5.56036 5.64474 6.05314 6.26443 6.40504 6.91575 6.99142 7.34926 8.05380 8.29854 9.28042 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.003442 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.211958 B = 8133.830151 C = 8943.893088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 H 0.078 0.922 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.066 0.934 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.079 0.921 10 C -0.067 4.067 11 N -0.965 5.965 12 Si 0.966 3.034 13 H -0.267 1.267 14 H -0.297 1.297 15 H -0.295 1.295 16 C 0.081 3.919 17 N -0.604 5.604 18 C 0.516 3.484 19 O -0.564 6.564 20 C 0.074 3.926 21 N -0.480 5.480 22 C 0.129 3.871 23 C -0.226 4.226 24 C 0.009 3.991 25 C -0.281 4.281 26 C 0.496 3.504 27 O -0.614 6.614 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.156 0.844 39 H 0.192 0.808 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 3.501 -15.395 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 H 0.096 0.904 4 C -0.160 4.160 5 C 0.055 3.945 6 H 0.084 0.916 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.097 0.903 10 C -0.260 4.260 11 N -0.615 5.615 12 Si 0.796 3.204 13 H -0.191 1.191 14 H -0.225 1.225 15 H -0.222 1.222 16 C -0.044 4.044 17 N -0.337 5.337 18 C 0.304 3.696 19 O -0.444 6.444 20 C -0.051 4.051 21 N -0.189 5.189 22 C 0.003 3.997 23 C -0.248 4.248 24 C -0.012 4.012 25 C -0.303 4.303 26 C 0.302 3.698 27 O -0.502 6.502 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.210 0.790 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.174 0.826 39 H 0.208 0.792 40 H 0.202 0.798 41 H 0.190 0.810 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.546 4.316 -15.395 20.323 hybrid contribution 1.096 -0.483 0.501 1.298 sum -11.449 3.833 -14.894 19.173 Atomic orbital electron populations 1.22035 0.93345 1.02257 1.03254 1.22029 0.95505 0.95410 0.83829 0.90408 1.23067 0.95548 1.00405 0.96939 1.21328 0.94732 0.89340 0.89135 0.91602 1.42483 1.04955 1.24997 1.63739 1.19646 0.85259 1.04703 1.27716 0.90297 1.25463 1.01213 0.98113 1.01199 1.69797 1.34072 1.15746 1.41882 0.85186 0.80816 0.77625 0.76779 1.19115 1.22460 1.22188 1.23089 0.85575 0.96446 0.99322 1.48591 1.28214 1.48085 1.08860 1.20604 0.84085 0.82091 0.82857 1.90641 1.26650 1.45028 1.82109 1.21872 0.97255 1.03988 0.82006 1.45111 1.28922 1.26238 1.18607 1.22685 0.85798 0.92766 0.98451 1.21197 1.04734 1.03609 0.95252 1.21903 0.91531 0.89377 0.98414 1.22110 1.02663 1.06935 0.98545 1.17732 0.85713 0.80519 0.85849 1.90907 1.34776 1.46053 1.78435 0.93110 0.90105 0.91741 0.90751 0.88629 0.78957 0.93999 0.90959 0.91514 0.86394 0.82627 0.79153 0.79767 0.80971 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.71 71.98 0.63 -3.31 16 2 C 0.14 3.74 3.77 45.54 0.17 3.91 16 3 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 4 C -0.12 -3.45 6.12 32.06 0.20 -3.26 16 5 C 0.16 5.70 3.59 46.18 0.17 5.87 16 6 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 7 N -0.72 -32.35 5.18 -317.33 -1.64 -33.99 16 8 C -0.24 -12.20 9.98 84.04 0.84 -11.36 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 10 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 11 N -0.96 -55.29 13.06 21.66 0.28 -55.01 16 12 Si 0.97 43.58 29.55 68.60 2.03 45.60 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 16 C 0.08 2.51 6.24 86.73 0.54 3.05 16 17 N -0.60 -17.79 3.24 -787.73 -2.55 -20.34 16 18 C 0.52 15.68 7.70 87.65 0.67 16.35 16 19 O -0.56 -20.12 14.08 -3.04 -0.04 -20.17 16 20 C 0.07 1.83 5.01 85.63 0.43 2.26 16 21 N -0.48 -11.88 2.07 -655.08 -1.36 -13.24 16 22 C 0.13 2.07 10.28 83.42 0.86 2.93 16 23 C -0.23 -2.72 10.01 22.08 0.22 -2.49 16 24 C 0.01 0.13 10.10 22.32 0.23 0.36 16 25 C -0.28 -6.51 9.99 22.40 0.22 -6.28 16 26 C 0.50 15.37 7.40 84.82 0.63 16.00 16 27 O -0.61 -24.71 16.64 -5.53 -0.09 -24.80 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.96 5.89 -2.39 -0.01 1.94 16 31 H 0.07 2.21 7.93 -2.39 -0.02 2.19 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.38 18.29 7.71 -92.71 -0.72 17.58 16 34 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.12 3.23 7.38 -2.39 -0.02 3.21 16 38 H 0.16 2.67 8.01 -2.39 -0.02 2.65 16 39 H 0.19 1.75 8.03 -2.91 -0.02 1.72 16 40 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -74.93 351.67 3.20 -71.73 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.31 Total: 29.30 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.27 Total: 20.91 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.27 Total: -122.58 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.13 Total: -44.96 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.93 3.20 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.326 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds