Wall clock time and date at job start Fri Apr 10 2020 17:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64745 * 59.47934 * 17 2 1 19 19 O 1.21289 * 120.00133 * 0.02562 * 18 17 2 20 20 C 1.50701 * 120.00085 * 179.97438 * 18 17 2 21 21 N 1.46507 * 109.46993 * 179.97438 * 20 18 17 22 22 C 1.35761 * 119.62256 * 89.99986 * 21 20 18 23 23 C 1.35353 * 120.70058 * 179.97438 * 22 21 20 24 24 C 1.40202 * 119.94737 * 0.03122 * 23 22 21 25 25 C 1.36401 * 119.26182 * 359.97438 * 24 23 22 26 26 C 1.34658 * 119.62027 * 269.72813 * 21 20 18 27 27 O 1.22054 * 119.99181 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 29 29 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 30 30 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 31 31 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 32 32 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 33 33 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 34 34 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 35 35 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 36 36 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 37 37 H 1.08997 * 109.47078 * 299.99511 * 20 18 17 38 38 H 1.08999 * 109.46736 * 60.00000 * 20 18 17 39 39 H 1.08000 * 119.65086 * 0.02562 * 22 21 20 40 40 H 1.07994 * 120.02897 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.36763 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.34421 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 5.5367 -7.1054 1.1098 14 1 5.1655 -7.1534 3.5057 15 1 3.2819 -7.2836 1.9841 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7739 -0.3852 -2.4658 19 8 1.0765 0.5746 -2.7180 20 6 2.3552 -1.2093 -3.5856 21 7 1.9325 -0.6514 -4.8727 22 6 2.6945 0.2966 -5.4758 23 6 2.3249 0.8265 -6.6653 24 6 1.1436 0.3968 -7.2861 25 6 0.3794 -0.5557 -6.6785 26 6 0.7955 -1.0888 -5.4465 27 8 0.1240 -1.9456 -4.8945 28 1 -0.3632 0.4966 0.8998 29 1 -0.3634 0.5309 -0.8799 30 1 -0.3633 -1.0274 -0.0197 31 1 1.2918 -0.7893 2.0200 32 1 2.9652 -0.2846 1.6209 33 1 4.0094 -2.3030 2.0123 34 1 6.0073 -4.5457 3.4634 35 1 3.9090 -1.5667 -0.7131 36 1 2.7087 -2.7079 -1.3926 37 1 3.4432 -1.1929 -3.5219 38 1 2.0016 -2.2369 -3.5017 39 1 3.6055 0.6309 -5.0020 40 1 2.9390 1.5803 -7.1352 41 1 0.8421 0.8152 -8.2349 42 1 -0.5337 -0.8998 -7.1414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989775333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:32 Heat of formation + Delta-G solvation = -11.891219 kcal Electronic energy + Delta-G solvation = -25093.747458 eV Core-core repulsion = 21460.997893 eV Total energy + Delta-G solvation = -3632.749565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57114 -39.86492 -37.52380 -36.94795 -34.66815 -34.24770 -31.98940 -31.37158 -30.04443 -28.57532 -28.13108 -25.53386 -24.21841 -23.90878 -23.12873 -21.79789 -20.26489 -19.07749 -17.68693 -17.48089 -17.34386 -17.28334 -16.44936 -15.75995 -15.59864 -15.03319 -14.70097 -14.60347 -14.29529 -14.12550 -13.47739 -13.30770 -13.05343 -13.03195 -12.72833 -12.51370 -12.42027 -12.07897 -12.04539 -11.88367 -11.80024 -11.24859 -11.04134 -10.83684 -10.71058 -10.57937 -10.32728 -10.06538 -10.03603 -9.83671 -9.68536 -9.08856 -8.49284 -8.10758 -7.16831 -5.91588 -3.22933 0.68135 1.76617 2.32236 2.59207 3.09919 3.35825 3.42494 3.43403 3.60222 4.36084 4.38929 4.46202 4.52596 4.70278 4.92516 4.99698 5.03539 5.06152 5.12573 5.17383 5.24548 5.40631 5.52340 5.56772 5.76053 5.78903 5.79520 5.87677 6.02770 6.04522 6.09730 6.15228 6.22278 6.32741 6.37241 6.46903 6.54889 6.77217 6.93098 7.58023 7.63223 7.94079 8.15776 8.25981 9.38131 9.90602 10.25620 11.30193 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003416 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.301185 B = 8194.586627 C = 8987.735246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.066 3.934 17 N -0.604 5.604 18 C 0.517 3.483 19 O -0.540 6.540 20 C 0.073 3.927 21 N -0.478 5.478 22 C 0.146 3.854 23 C -0.238 4.238 24 C -0.016 4.016 25 C -0.243 4.243 26 C 0.518 3.482 27 O -0.549 6.549 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 11.435 -16.145 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.089 0.911 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.059 4.059 17 N -0.338 5.338 18 C 0.303 3.697 19 O -0.417 6.417 20 C -0.053 4.053 21 N -0.188 5.188 22 C 0.019 3.981 23 C -0.261 4.261 24 C -0.038 4.038 25 C -0.265 4.265 26 C 0.320 3.680 27 O -0.431 6.431 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.511 11.169 -15.930 19.972 hybrid contribution 0.540 -0.794 0.160 0.974 sum -3.971 10.375 -15.769 19.289 Atomic orbital electron populations 1.22130 0.94894 1.02515 1.02402 1.21519 0.94500 0.95817 0.84402 0.91131 1.23011 1.01802 0.96976 0.95793 1.21268 0.92889 0.91329 0.88334 0.91447 1.42323 1.35217 1.04278 1.53283 1.19258 1.12446 0.82641 1.23844 0.90889 1.24771 0.98109 0.98074 0.99412 1.69655 1.20560 1.34340 1.33072 0.86182 0.77763 0.85164 0.77023 1.21551 1.21678 1.20577 1.23629 0.94972 0.86929 1.00403 1.48576 1.50097 1.30888 1.04231 1.20184 0.81412 0.85190 0.82876 1.90701 1.38715 1.29045 1.83284 1.21826 1.01863 1.00496 0.81070 1.45095 1.21652 1.33584 1.18500 1.21941 0.95220 0.87686 0.93260 1.20597 1.00987 1.06989 0.97509 1.21412 0.92081 0.92145 0.98143 1.22080 1.04162 1.03519 0.96732 1.17159 0.80011 0.83821 0.87001 1.90972 1.52857 1.33500 1.65750 0.91857 0.91578 0.92309 0.90013 0.90463 0.77818 0.93283 0.90822 0.91121 0.86037 0.85140 0.82289 0.83794 0.84907 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.05 37.16 0.34 -1.97 16 2 C 0.14 2.05 3.50 -66.95 -0.23 1.81 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.06 6.13 -24.90 -0.15 -2.21 16 5 C 0.17 3.14 3.70 -65.78 -0.24 2.89 16 6 H 0.07 1.28 8.11 -51.93 -0.42 0.85 16 7 N -0.71 -16.19 5.26 -51.35 -0.27 -16.46 16 8 C -0.25 -6.47 9.97 -15.06 -0.15 -6.62 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.48 13.06 55.49 0.72 -25.75 16 12 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.07 1.04 6.39 -2.53 -0.02 1.03 16 17 N -0.60 -9.08 3.08 -163.01 -0.50 -9.58 16 18 C 0.52 7.95 7.70 -10.99 -0.08 7.86 16 19 O -0.54 -9.83 15.34 5.55 0.09 -9.74 16 20 C 0.07 0.90 4.83 -5.19 -0.03 0.88 16 21 N -0.48 -6.02 2.07 -121.06 -0.25 -6.27 16 22 C 0.15 1.33 10.28 -16.84 -0.17 1.16 16 23 C -0.24 -1.85 10.01 -39.87 -0.40 -2.25 16 24 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 25 C -0.24 -2.85 9.99 -39.38 -0.39 -3.24 16 26 C 0.52 7.81 7.40 -15.45 -0.11 7.70 16 27 O -0.55 -10.45 16.63 4.87 0.08 -10.36 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.06 6.76 -51.93 -0.35 0.71 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 32 H 0.08 1.16 7.99 -51.93 -0.42 0.74 16 33 H 0.39 9.37 7.73 -40.82 -0.32 9.06 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.08 7.47 -51.93 -0.39 0.69 16 37 H 0.12 1.07 8.01 -51.93 -0.42 0.65 16 38 H 0.13 1.73 7.08 -51.93 -0.37 1.37 16 39 H 0.16 0.94 8.04 -52.49 -0.42 0.52 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -33.89 352.77 -7.99 -41.88 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.01 Total: 8.43 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.14 Total: 6.22 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.30 Total: -58.06 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.89 -7.99 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.988 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds