Wall clock time and date at job start Fri Apr 10 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64745 * 59.47934 * 17 2 1 19 19 O 1.21289 * 120.00133 * 0.02562 * 18 17 2 20 20 C 1.50701 * 120.00085 * 179.97438 * 18 17 2 21 21 N 1.46507 * 109.46993 * 179.97438 * 20 18 17 22 22 C 1.35761 * 119.62256 * 89.99986 * 21 20 18 23 23 C 1.35353 * 120.70058 * 179.97438 * 22 21 20 24 24 C 1.40202 * 119.94737 * 0.03122 * 23 22 21 25 25 C 1.36401 * 119.26182 * 359.97438 * 24 23 22 26 26 C 1.34658 * 119.62027 * 269.72813 * 21 20 18 27 27 O 1.22054 * 119.99181 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 29 29 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 30 30 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 31 31 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 32 32 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 33 33 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 34 34 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 35 35 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 36 36 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 37 37 H 1.08997 * 109.47078 * 299.99511 * 20 18 17 38 38 H 1.08999 * 109.46736 * 60.00000 * 20 18 17 39 39 H 1.08000 * 119.65086 * 0.02562 * 22 21 20 40 40 H 1.07994 * 120.02897 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.36763 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.34421 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 5.5367 -7.1054 1.1098 14 1 5.1655 -7.1534 3.5057 15 1 3.2819 -7.2836 1.9841 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7739 -0.3852 -2.4658 19 8 1.0765 0.5746 -2.7180 20 6 2.3552 -1.2093 -3.5856 21 7 1.9325 -0.6514 -4.8727 22 6 2.6945 0.2966 -5.4758 23 6 2.3249 0.8265 -6.6653 24 6 1.1436 0.3968 -7.2861 25 6 0.3794 -0.5557 -6.6785 26 6 0.7955 -1.0888 -5.4465 27 8 0.1240 -1.9456 -4.8945 28 1 -0.3632 0.4966 0.8998 29 1 -0.3634 0.5309 -0.8799 30 1 -0.3633 -1.0274 -0.0197 31 1 1.2918 -0.7893 2.0200 32 1 2.9652 -0.2846 1.6209 33 1 4.0094 -2.3030 2.0123 34 1 6.0073 -4.5457 3.4634 35 1 3.9090 -1.5667 -0.7131 36 1 2.7087 -2.7079 -1.3926 37 1 3.4432 -1.1929 -3.5219 38 1 2.0016 -2.2369 -3.5017 39 1 3.6055 0.6309 -5.0020 40 1 2.9390 1.5803 -7.1352 41 1 0.8421 0.8152 -8.2349 42 1 -0.5337 -0.8998 -7.1414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989775333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:31 Heat of formation + Delta-G solvation = -34.166068 kcal Electronic energy + Delta-G solvation = -25094.713368 eV Core-core repulsion = 21460.997893 eV Total energy + Delta-G solvation = -3633.715475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52827 -41.09044 -38.84945 -37.96752 -36.02117 -35.52517 -33.38582 -32.96087 -30.86292 -30.06460 -29.26101 -26.79665 -25.84206 -24.91478 -24.16365 -23.01119 -21.65302 -20.28457 -19.30676 -18.59189 -18.43732 -18.34165 -17.32271 -17.08808 -16.82615 -16.36735 -16.11640 -15.63841 -15.44879 -15.12977 -15.06622 -14.75125 -14.53359 -14.32459 -13.94223 -13.64010 -13.32204 -13.19285 -13.07741 -13.05233 -12.96904 -12.80979 -12.73801 -12.28903 -12.17872 -12.07576 -11.73160 -11.53313 -11.48134 -11.10237 -11.02038 -10.76298 -9.78041 -9.06222 -8.98445 -7.95395 -5.25000 -0.09302 0.92900 1.36051 1.41245 1.50370 1.51573 1.59188 1.98040 2.56049 2.70302 3.25298 3.36100 3.60067 3.72284 3.76854 3.81491 3.93819 3.99747 4.06644 4.11363 4.20206 4.30769 4.36190 4.43205 4.48738 4.51613 4.65110 4.73427 4.87057 4.97032 5.01574 5.10684 5.17535 5.20740 5.27814 5.37986 5.40628 5.54663 5.65075 6.05340 6.25970 6.38551 6.90441 6.97937 7.34498 8.04699 8.29789 9.27082 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003416 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.301185 B = 8194.586627 C = 8987.735246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.166 3.834 6 H 0.057 0.943 7 N -0.720 5.720 8 C -0.245 4.245 9 H 0.076 0.924 10 C -0.065 4.065 11 N -0.963 5.963 12 Si 0.966 3.034 13 H -0.286 1.286 14 H -0.298 1.298 15 H -0.273 1.273 16 C 0.081 3.919 17 N -0.603 5.603 18 C 0.516 3.484 19 O -0.569 6.569 20 C 0.074 3.926 21 N -0.481 5.481 22 C 0.130 3.870 23 C -0.227 4.227 24 C 0.009 3.991 25 C -0.283 4.283 26 C 0.495 3.505 27 O -0.614 6.614 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.163 0.837 38 H 0.117 0.883 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.172 0.828 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 13.025 -17.871 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.055 3.945 6 H 0.075 0.925 7 N -0.360 5.360 8 C -0.376 4.376 9 H 0.094 0.906 10 C -0.258 4.258 11 N -0.613 5.613 12 Si 0.796 3.204 13 H -0.213 1.213 14 H -0.225 1.225 15 H -0.198 1.198 16 C -0.044 4.044 17 N -0.336 5.336 18 C 0.304 3.696 19 O -0.449 6.449 20 C -0.051 4.051 21 N -0.190 5.190 22 C 0.004 3.996 23 C -0.249 4.249 24 C -0.012 4.012 25 C -0.304 4.304 26 C 0.301 3.699 27 O -0.502 6.502 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.180 0.820 38 H 0.135 0.865 39 H 0.212 0.788 40 H 0.203 0.797 41 H 0.190 0.810 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.561 12.801 -17.708 22.138 hybrid contribution 0.224 -1.134 0.600 1.302 sum -3.337 11.667 -17.108 20.975 Atomic orbital electron populations 1.22066 0.94722 1.01768 1.02663 1.21575 0.94584 0.96188 0.83901 0.90090 1.22906 1.02318 0.94801 0.96188 1.21395 0.91287 0.92507 0.89316 0.92526 1.42387 1.36074 1.03445 1.54061 1.19577 1.11477 0.84166 1.22395 0.90623 1.25448 0.98574 1.01685 1.00081 1.69784 1.21474 1.35554 1.34518 0.85258 0.77789 0.80969 0.76431 1.21291 1.22460 1.19830 1.23290 0.95039 0.87389 0.98717 1.48578 1.49936 1.30539 1.04561 1.20656 0.80770 0.84946 0.83268 1.90682 1.39977 1.30596 1.83673 1.21896 1.03857 0.99054 0.80289 1.45124 1.21404 1.34103 1.18330 1.22722 0.96033 0.86809 0.94017 1.21205 1.00558 1.06489 0.96627 1.21907 0.91032 0.89526 0.98755 1.22107 1.05709 1.06008 0.96589 1.17740 0.80422 0.83711 0.88027 1.90914 1.55085 1.36597 1.67590 0.89476 0.93482 0.93427 0.89092 0.90018 0.78777 0.93922 0.90365 0.90792 0.81996 0.86524 0.78788 0.79670 0.81023 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.05 71.98 0.65 -3.64 16 2 C 0.14 3.90 3.50 45.34 0.16 4.06 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 4 C -0.12 -3.56 6.13 31.78 0.19 -3.36 16 5 C 0.17 5.86 3.70 46.38 0.17 6.03 16 6 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 7 N -0.72 -32.60 5.26 -316.37 -1.66 -34.27 16 8 C -0.24 -12.54 9.97 84.04 0.84 -11.71 16 9 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 10 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 11 N -0.96 -55.38 13.06 21.65 0.28 -55.10 16 12 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 13 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 C 0.08 2.47 6.39 86.86 0.55 3.02 16 17 N -0.60 -17.54 3.08 -788.05 -2.43 -19.96 16 18 C 0.52 15.51 7.70 87.66 0.67 16.18 16 19 O -0.57 -20.55 15.34 -3.06 -0.05 -20.60 16 20 C 0.07 1.78 4.83 85.63 0.41 2.19 16 21 N -0.48 -11.65 2.07 -655.06 -1.36 -13.01 16 22 C 0.13 1.96 10.28 83.42 0.86 2.82 16 23 C -0.23 -2.57 10.01 22.08 0.22 -2.35 16 24 C 0.01 0.13 10.10 22.32 0.23 0.36 16 25 C -0.28 -6.57 9.99 22.40 0.22 -6.35 16 26 C 0.50 15.38 7.40 84.82 0.63 16.01 16 27 O -0.61 -25.00 16.63 -5.49 -0.09 -25.09 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.50 6.76 -2.39 -0.02 1.48 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 2.46 7.83 -2.39 -0.02 2.44 16 32 H 0.08 2.32 7.99 -2.39 -0.02 2.30 16 33 H 0.38 18.35 7.73 -92.71 -0.72 17.63 16 34 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.21 7.47 -2.39 -0.02 2.19 16 37 H 0.16 2.43 8.01 -2.39 -0.02 2.41 16 38 H 0.12 3.18 7.08 -2.39 -0.02 3.16 16 39 H 0.20 1.43 8.04 -2.91 -0.02 1.41 16 40 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -76.66 352.77 3.31 -73.35 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.31 Total: 28.44 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.28 Total: 20.25 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.17 Total: -122.34 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.14 Total: -45.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.66 3.31 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.181 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds