Wall clock time and date at job start Fri Apr 10 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.86893 * 2 1 4 4 C 1.54324 * 110.00657 * 238.90533 * 2 1 3 5 5 C 1.55154 * 102.94096 * 262.70013 * 4 2 1 6 6 H 1.08998 * 111.00497 * 82.57893 * 5 4 2 7 7 N 1.46509 * 111.00577 * 206.39045 * 5 4 2 8 8 C 1.36934 * 120.00023 * 205.00084 * 7 5 4 9 9 H 1.07999 * 120.00024 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99810 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00093 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00198 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47022 * 90.00013 * 12 10 8 14 14 H 1.48499 * 109.47201 * 210.00341 * 12 10 8 15 15 H 1.48502 * 109.46780 * 330.00104 * 12 10 8 16 16 C 1.55133 * 101.48787 * 324.33557 * 5 4 2 17 17 N 1.47015 * 109.88338 * 121.02046 * 2 1 3 18 18 C 1.34782 * 125.64572 * 300.59426 * 17 2 1 19 19 O 1.21276 * 120.00447 * 359.97438 * 18 17 2 20 20 C 1.50703 * 119.99815 * 180.02562 * 18 17 2 21 21 N 1.46501 * 109.47085 * 179.97438 * 20 18 17 22 22 C 1.35764 * 119.62421 * 90.00032 * 21 20 18 23 23 C 1.35339 * 120.70198 * 179.74436 * 22 21 20 24 24 C 1.40202 * 119.94999 * 359.97438 * 23 22 21 25 25 C 1.36397 * 119.26362 * 359.97438 * 24 23 22 26 26 C 1.34654 * 119.62250 * 269.72410 * 21 20 18 27 27 O 1.22066 * 119.98962 * 0.25788 * 26 21 20 28 28 H 1.09003 * 109.47136 * 300.42998 * 1 2 3 29 29 H 1.08997 * 109.47170 * 60.43837 * 1 2 3 30 30 H 1.09004 * 109.46812 * 180.43778 * 1 2 3 31 31 H 1.09003 * 110.72529 * 21.06394 * 4 2 1 32 32 H 1.09002 * 110.72028 * 144.16292 * 4 2 1 33 33 H 0.96995 * 119.99663 * 24.99909 * 7 5 4 34 34 H 0.97006 * 119.99646 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.49764 * 278.45605 * 16 5 4 36 36 H 1.08996 * 110.34105 * 156.06037 * 16 5 4 37 37 H 1.09000 * 109.47479 * 59.99545 * 20 18 17 38 38 H 1.09001 * 109.47056 * 300.00146 * 20 18 17 39 39 H 1.08003 * 119.64373 * 359.71904 * 22 21 20 40 40 H 1.08001 * 120.02583 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.36790 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.35166 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2418 5 6 2.3575 -2.1680 -0.6904 6 1 1.4521 -2.7741 -0.6594 7 7 3.4012 -2.8282 -1.4786 8 6 3.4670 -4.1953 -1.5189 9 1 2.7498 -4.7869 -0.9694 10 6 4.4556 -4.8208 -2.2661 11 7 5.3300 -4.0998 -2.9354 12 14 4.5459 -6.6858 -2.3207 13 1 3.7223 -7.1885 -3.4494 14 1 5.9569 -7.1077 -2.5111 15 1 4.0303 -7.2438 -1.0447 16 6 2.8644 -1.8433 0.7393 17 7 2.0301 -0.7125 1.1848 18 6 1.7730 -0.3829 2.4661 19 8 1.0745 0.5762 2.7172 20 6 2.3545 -1.2055 3.5870 21 7 1.9316 -0.6464 4.8734 22 6 0.7825 -1.0832 5.4497 23 6 0.3739 -0.5854 6.6400 24 6 1.1408 0.3915 7.2906 25 6 2.2954 0.8283 6.7105 26 6 2.6897 0.2908 5.4733 27 8 3.7205 0.6732 4.9428 28 1 -0.3633 0.5205 0.8861 29 1 -0.3633 0.5070 -0.8939 30 1 -0.3633 -1.0277 0.0079 31 1 1.2961 -0.7904 -2.0201 32 1 2.9666 -0.2789 -1.6182 33 1 4.0455 -2.2968 -1.9718 34 1 6.0210 -4.5369 -3.4573 35 1 3.9148 -1.5533 0.7152 36 1 2.7219 -2.7016 1.3958 37 1 3.4425 -1.1882 3.5238 38 1 2.0022 -2.2336 3.5037 39 1 0.1881 -1.8356 4.9527 40 1 -0.5422 -0.9405 7.0885 41 1 0.8209 0.7936 8.2405 42 1 2.8999 1.5799 7.1965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989775334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:34 Heat of formation + Delta-G solvation = -12.013841 kcal Electronic energy + Delta-G solvation = -25060.181363 eV Core-core repulsion = 21427.426481 eV Total energy + Delta-G solvation = -3632.754882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57237 -39.86529 -37.51994 -36.94900 -34.67008 -34.25467 -31.99233 -31.38515 -30.04602 -28.58983 -28.13396 -25.54526 -24.22879 -23.90645 -23.12051 -21.81432 -20.27525 -19.06909 -17.70352 -17.47950 -17.38914 -17.24318 -16.46501 -15.77756 -15.58538 -15.02216 -14.72626 -14.60103 -14.25704 -14.17446 -13.49161 -13.33004 -13.07467 -13.02635 -12.70547 -12.53817 -12.40051 -12.09629 -12.05091 -11.92081 -11.79675 -11.27016 -11.05900 -10.85320 -10.73874 -10.58652 -10.32929 -10.08933 -10.03961 -9.85189 -9.68619 -9.09964 -8.48955 -8.11048 -7.17596 -5.92196 -3.23916 0.68021 1.76531 2.32212 2.59633 3.09584 3.34382 3.39601 3.41847 3.60066 4.36093 4.37858 4.46106 4.51717 4.69654 4.91817 4.99224 5.03672 5.05753 5.11944 5.18775 5.23700 5.40222 5.51649 5.53979 5.75228 5.76439 5.77932 5.87438 5.99607 6.04017 6.09598 6.13213 6.20975 6.32586 6.35797 6.44459 6.53346 6.75039 6.92987 7.54966 7.63201 7.93947 8.15892 8.25072 9.36938 9.89974 10.24628 11.29525 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003358 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.918268 B = 8336.324698 C = 9064.564658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.176 3.824 6 H 0.069 0.931 7 N -0.711 5.711 8 C -0.253 4.253 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.927 5.927 12 Si 0.909 3.091 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.066 3.934 17 N -0.604 5.604 18 C 0.517 3.483 19 O -0.540 6.540 20 C 0.073 3.927 21 N -0.478 5.478 22 C 0.146 3.854 23 C -0.238 4.238 24 C -0.016 4.016 25 C -0.243 4.243 26 C 0.518 3.482 27 O -0.549 6.549 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.388 0.612 34 H 0.258 0.742 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 5.700 16.101 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.088 0.912 4 C -0.177 4.177 5 C 0.063 3.937 6 H 0.087 0.913 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.060 4.060 17 N -0.338 5.338 18 C 0.303 3.697 19 O -0.417 6.417 20 C -0.053 4.053 21 N -0.188 5.188 22 C 0.019 3.981 23 C -0.261 4.261 24 C -0.038 4.038 25 C -0.265 4.265 26 C 0.320 3.680 27 O -0.431 6.431 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.143 6.256 15.903 20.401 hybrid contribution 0.327 -0.922 -0.205 0.999 sum -10.815 5.334 15.699 19.796 Atomic orbital electron populations 1.22123 0.94925 1.02235 1.02495 1.21525 0.94398 0.96039 0.84436 0.91188 1.23037 1.01839 0.97114 0.95727 1.21298 0.92790 0.91292 0.88299 0.91285 1.42340 1.33259 1.04101 1.55364 1.19231 1.11351 0.82441 1.25325 0.90931 1.24787 0.97857 0.98067 0.99660 1.69661 1.18793 1.34271 1.34712 0.86180 0.76963 0.85170 0.77751 1.21563 1.21660 1.20638 1.23691 0.95182 0.86847 1.00257 1.48563 1.49771 1.31216 1.04224 1.20181 0.81285 0.85327 0.82872 1.90697 1.39168 1.28578 1.83295 1.21827 1.04375 0.97989 0.81062 1.45092 1.20472 1.34665 1.18587 1.21940 0.86240 0.96285 0.93638 1.20595 1.04079 1.04097 0.97301 1.21413 0.92127 0.92045 0.98187 1.22079 1.00994 1.06657 0.96766 1.17163 0.84368 0.79591 0.86874 1.90975 1.24901 1.60212 1.67048 0.91585 0.91840 0.92419 0.90032 0.90482 0.77775 0.93229 0.90794 0.91220 0.85172 0.86022 0.82278 0.83785 0.84901 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.07 37.16 0.34 -1.75 16 2 C 0.14 2.03 3.49 -66.95 -0.23 1.79 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.08 6.14 -24.90 -0.15 -2.24 16 5 C 0.18 3.09 3.73 -65.66 -0.24 2.84 16 6 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 7 N -0.71 -16.13 5.24 -51.23 -0.27 -16.39 16 8 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.52 13.06 55.49 0.72 -25.80 16 12 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.07 1.04 6.40 -2.41 -0.02 1.02 16 17 N -0.60 -9.08 3.08 -162.88 -0.50 -9.58 16 18 C 0.52 7.95 7.70 -10.98 -0.08 7.87 16 19 O -0.54 -9.83 15.32 5.56 0.09 -9.75 16 20 C 0.07 0.90 4.82 -5.19 -0.03 0.88 16 21 N -0.48 -6.02 2.07 -121.06 -0.25 -6.27 16 22 C 0.15 1.33 10.28 -16.85 -0.17 1.16 16 23 C -0.24 -1.85 10.01 -39.88 -0.40 -2.25 16 24 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 25 C -0.24 -2.85 9.99 -39.38 -0.39 -3.24 16 26 C 0.52 7.84 7.40 -15.45 -0.11 7.72 16 27 O -0.55 -10.51 16.64 4.86 0.08 -10.43 16 28 H 0.07 0.96 6.74 -51.93 -0.35 0.61 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 32 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 33 H 0.39 9.48 7.77 -40.82 -0.32 9.16 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 37 H 0.13 1.74 7.38 -51.93 -0.38 1.35 16 38 H 0.12 1.06 7.73 -51.93 -0.40 0.66 16 39 H 0.16 0.94 8.04 -52.48 -0.42 0.52 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -33.91 352.80 -7.99 -41.90 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.01 Total: 8.53 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.14 Total: 6.41 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.30 Total: -58.04 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.91 -7.99 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.890 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds