Wall clock time and date at job start Fri Apr 10 2020 17:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.86893 * 2 1 4 4 C 1.54324 * 110.00657 * 238.90533 * 2 1 3 5 5 C 1.55154 * 102.94096 * 262.70013 * 4 2 1 6 6 H 1.08998 * 111.00497 * 82.57893 * 5 4 2 7 7 N 1.46509 * 111.00577 * 206.39045 * 5 4 2 8 8 C 1.36934 * 120.00023 * 205.00084 * 7 5 4 9 9 H 1.07999 * 120.00024 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99810 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00093 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00198 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47022 * 90.00013 * 12 10 8 14 14 H 1.48499 * 109.47201 * 210.00341 * 12 10 8 15 15 H 1.48502 * 109.46780 * 330.00104 * 12 10 8 16 16 C 1.55133 * 101.48787 * 324.33557 * 5 4 2 17 17 N 1.47015 * 109.88338 * 121.02046 * 2 1 3 18 18 C 1.34782 * 125.64572 * 300.59426 * 17 2 1 19 19 O 1.21276 * 120.00447 * 359.97438 * 18 17 2 20 20 C 1.50703 * 119.99815 * 180.02562 * 18 17 2 21 21 N 1.46501 * 109.47085 * 179.97438 * 20 18 17 22 22 C 1.35764 * 119.62421 * 90.00032 * 21 20 18 23 23 C 1.35339 * 120.70198 * 179.74436 * 22 21 20 24 24 C 1.40202 * 119.94999 * 359.97438 * 23 22 21 25 25 C 1.36397 * 119.26362 * 359.97438 * 24 23 22 26 26 C 1.34654 * 119.62250 * 269.72410 * 21 20 18 27 27 O 1.22066 * 119.98962 * 0.25788 * 26 21 20 28 28 H 1.09003 * 109.47136 * 300.42998 * 1 2 3 29 29 H 1.08997 * 109.47170 * 60.43837 * 1 2 3 30 30 H 1.09004 * 109.46812 * 180.43778 * 1 2 3 31 31 H 1.09003 * 110.72529 * 21.06394 * 4 2 1 32 32 H 1.09002 * 110.72028 * 144.16292 * 4 2 1 33 33 H 0.96995 * 119.99663 * 24.99909 * 7 5 4 34 34 H 0.97006 * 119.99646 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.49764 * 278.45605 * 16 5 4 36 36 H 1.08996 * 110.34105 * 156.06037 * 16 5 4 37 37 H 1.09000 * 109.47479 * 59.99545 * 20 18 17 38 38 H 1.09001 * 109.47056 * 300.00146 * 20 18 17 39 39 H 1.08003 * 119.64373 * 359.71904 * 22 21 20 40 40 H 1.08001 * 120.02583 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.36790 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.35166 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2418 5 6 2.3575 -2.1680 -0.6904 6 1 1.4521 -2.7741 -0.6594 7 7 3.4012 -2.8282 -1.4786 8 6 3.4670 -4.1953 -1.5189 9 1 2.7498 -4.7869 -0.9694 10 6 4.4556 -4.8208 -2.2661 11 7 5.3300 -4.0998 -2.9354 12 14 4.5459 -6.6858 -2.3207 13 1 3.7223 -7.1885 -3.4494 14 1 5.9569 -7.1077 -2.5111 15 1 4.0303 -7.2438 -1.0447 16 6 2.8644 -1.8433 0.7393 17 7 2.0301 -0.7125 1.1848 18 6 1.7730 -0.3829 2.4661 19 8 1.0745 0.5762 2.7172 20 6 2.3545 -1.2055 3.5870 21 7 1.9316 -0.6464 4.8734 22 6 0.7825 -1.0832 5.4497 23 6 0.3739 -0.5854 6.6400 24 6 1.1408 0.3915 7.2906 25 6 2.2954 0.8283 6.7105 26 6 2.6897 0.2908 5.4733 27 8 3.7205 0.6732 4.9428 28 1 -0.3633 0.5205 0.8861 29 1 -0.3633 0.5070 -0.8939 30 1 -0.3633 -1.0277 0.0079 31 1 1.2961 -0.7904 -2.0201 32 1 2.9666 -0.2789 -1.6182 33 1 4.0455 -2.2968 -1.9718 34 1 6.0210 -4.5369 -3.4573 35 1 3.9148 -1.5533 0.7152 36 1 2.7219 -2.7016 1.3958 37 1 3.4425 -1.1882 3.5238 38 1 2.0022 -2.2336 3.5037 39 1 0.1881 -1.8356 4.9527 40 1 -0.5422 -0.9405 7.0885 41 1 0.8209 0.7936 8.2405 42 1 2.8999 1.5799 7.1965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989775334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:33 Heat of formation + Delta-G solvation = -34.459654 kcal Electronic energy + Delta-G solvation = -25061.154686 eV Core-core repulsion = 21427.426481 eV Total energy + Delta-G solvation = -3633.728206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52924 -41.08510 -38.83856 -37.97138 -36.00564 -35.52574 -33.37069 -32.93883 -30.86269 -30.05242 -29.25850 -26.76541 -25.82029 -24.92186 -24.14414 -23.01750 -21.63874 -20.26880 -19.30718 -18.59724 -18.46954 -18.29281 -17.34905 -17.08383 -16.79425 -16.35609 -16.10003 -15.65321 -15.42832 -15.16520 -15.03722 -14.74050 -14.49034 -14.29728 -13.96216 -13.60076 -13.28757 -13.17346 -13.09560 -13.02639 -12.95558 -12.76844 -12.73391 -12.31252 -12.15546 -12.03758 -11.71537 -11.52952 -11.46799 -11.10696 -11.00643 -10.75792 -9.78094 -9.05726 -8.98499 -7.93237 -5.23648 -0.09197 0.92915 1.36156 1.41591 1.52735 1.52968 1.61245 1.97865 2.57894 2.70348 3.25728 3.38268 3.59472 3.73561 3.77580 3.83381 3.94703 3.99873 4.09341 4.11783 4.20424 4.32184 4.36160 4.45344 4.49260 4.52095 4.69047 4.73284 4.89718 4.99274 5.02460 5.11982 5.17703 5.23402 5.29241 5.38203 5.42330 5.56492 5.65345 6.05288 6.27048 6.39202 6.90413 6.97856 7.34990 8.06360 8.29562 9.29744 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003358 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.918268 B = 8336.324698 C = 9064.564658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 H 0.060 0.940 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.078 0.922 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.086 0.914 10 C -0.072 4.072 11 N -0.969 5.969 12 Si 0.970 3.030 13 H -0.289 1.289 14 H -0.302 1.302 15 H -0.264 1.264 16 C 0.079 3.921 17 N -0.602 5.602 18 C 0.515 3.485 19 O -0.570 6.570 20 C 0.074 3.926 21 N -0.481 5.481 22 C 0.131 3.869 23 C -0.227 4.227 24 C 0.010 3.990 25 C -0.283 4.283 26 C 0.495 3.505 27 O -0.616 6.616 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.196 0.804 40 H 0.187 0.813 41 H 0.172 0.828 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.664 4.259 18.036 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 H 0.078 0.922 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.096 0.904 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.104 0.896 10 C -0.265 4.265 11 N -0.619 5.619 12 Si 0.799 3.201 13 H -0.217 1.217 14 H -0.229 1.229 15 H -0.188 1.188 16 C -0.047 4.047 17 N -0.336 5.336 18 C 0.303 3.697 19 O -0.450 6.450 20 C -0.051 4.051 21 N -0.189 5.189 22 C 0.005 3.995 23 C -0.249 4.249 24 C -0.012 4.012 25 C -0.305 4.305 26 C 0.301 3.699 27 O -0.504 6.504 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.182 0.818 39 H 0.213 0.787 40 H 0.204 0.796 41 H 0.190 0.810 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.430 4.801 17.896 23.485 hybrid contribution 1.152 -0.415 -0.704 1.412 sum -13.279 4.386 17.192 22.161 Atomic orbital electron populations 1.22027 0.93242 1.02679 1.02723 1.21568 0.95665 0.95394 0.83995 0.92166 1.22936 1.01939 0.95450 0.96289 1.21470 0.91631 0.92226 0.88606 0.90432 1.42493 1.34176 1.03471 1.56129 1.19670 1.10339 0.83799 1.23454 0.89607 1.25548 0.98375 1.01983 1.00558 1.69818 1.19900 1.35648 1.36530 0.85195 0.76040 0.80655 0.78177 1.21667 1.22949 1.18849 1.23377 0.94126 0.87711 0.99492 1.48569 1.49498 1.30962 1.04530 1.20668 0.80648 0.85077 0.83263 1.90677 1.40703 1.29894 1.83688 1.21899 1.03489 0.99458 0.80234 1.45121 1.21309 1.34124 1.18372 1.22734 0.85225 0.97092 0.94452 1.21209 1.04742 1.02538 0.96387 1.21910 0.89975 0.90427 0.98856 1.22099 1.03306 1.08508 0.96566 1.17752 0.84157 0.80089 0.87949 1.90917 1.27708 1.62885 1.68880 0.92996 0.89983 0.91737 0.88541 0.91441 0.79246 0.94112 0.92660 0.89121 0.86687 0.81757 0.78662 0.79612 0.81019 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.07 71.98 0.65 -2.95 16 2 C 0.14 3.86 3.49 45.34 0.16 4.02 16 3 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.13 -3.72 6.14 31.78 0.20 -3.52 16 5 C 0.17 5.78 3.73 46.46 0.17 5.95 16 6 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 7 N -0.72 -32.59 5.24 -316.01 -1.66 -34.25 16 8 C -0.24 -12.02 9.96 84.03 0.84 -11.18 16 9 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.97 -56.52 13.06 21.65 0.28 -56.23 16 12 Si 0.97 43.19 29.55 68.60 2.03 45.21 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 16 C 0.08 2.38 6.40 86.93 0.56 2.94 16 17 N -0.60 -17.56 3.08 -787.63 -2.43 -19.99 16 18 C 0.52 15.48 7.70 87.66 0.67 16.16 16 19 O -0.57 -20.58 15.32 -3.02 -0.05 -20.63 16 20 C 0.07 1.77 4.82 85.63 0.41 2.18 16 21 N -0.48 -11.58 2.07 -655.06 -1.36 -12.94 16 22 C 0.13 1.93 10.28 83.42 0.86 2.78 16 23 C -0.23 -2.51 10.01 22.08 0.22 -2.29 16 24 C 0.01 0.14 10.10 22.32 0.23 0.36 16 25 C -0.28 -6.60 9.99 22.40 0.22 -6.38 16 26 C 0.49 15.42 7.40 84.82 0.63 16.05 16 27 O -0.62 -25.32 16.64 -5.53 -0.09 -25.41 16 28 H 0.05 1.43 6.74 -2.39 -0.02 1.41 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.10 2.53 7.83 -2.39 -0.02 2.51 16 32 H 0.07 2.11 8.01 -2.39 -0.02 2.09 16 33 H 0.38 18.67 7.77 -92.71 -0.72 17.95 16 34 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.37 7.48 -2.39 -0.02 2.35 16 37 H 0.12 3.15 7.38 -2.39 -0.02 3.13 16 38 H 0.17 2.35 7.73 -2.39 -0.02 2.34 16 39 H 0.20 1.33 8.04 -2.91 -0.02 1.31 16 40 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -77.67 352.80 3.32 -74.35 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.31 Total: 29.15 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.28 Total: 20.73 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -5.16 Total: -123.41 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.14 Total: -46.04 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.67 3.32 -74.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989775334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.893 kcal (2) G-P(sol) polarization free energy of solvation -77.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds