Wall clock time and date at job start Fri Apr 10 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.58824 * 2 1 4 4 C 1.53191 * 109.59046 * 239.57186 * 2 1 3 5 5 H 1.09002 * 109.49346 * 65.62366 * 4 2 1 6 6 N 1.46503 * 109.49465 * 305.56651 * 4 2 1 7 7 C 1.34778 * 120.00240 * 155.00099 * 6 4 2 8 8 O 1.21552 * 119.99808 * 359.97438 * 7 6 4 9 9 C 1.47830 * 119.99955 * 179.97438 * 7 6 4 10 10 N 1.32856 * 119.78526 * 359.72283 * 9 7 6 11 11 C 1.31369 * 121.69263 * 179.75164 * 10 9 7 12 12 C 1.38772 * 121.07120 * 0.52932 * 11 10 9 13 13 C 1.38301 * 119.44040 * 359.73575 * 12 11 10 14 14 C 1.39338 * 118.44070 * 0.02562 * 13 12 11 15 15 O 1.35647 * 120.53866 * 180.02562 * 14 13 12 16 16 C 1.53037 * 109.31823 * 185.58115 * 4 2 1 17 17 C 1.53043 * 109.53810 * 61.36251 * 16 4 2 18 18 C 1.53625 * 109.24117 * 298.51263 * 17 16 4 19 19 N 1.46927 * 109.58617 * 120.28301 * 2 1 3 20 20 C 1.36938 * 120.62897 * 353.37041 * 19 2 1 21 21 H 1.08000 * 119.99801 * 31.15460 * 20 19 2 22 22 C 1.38811 * 120.00052 * 211.15407 * 20 19 2 23 23 N 1.31619 * 120.00079 * 23.57572 * 22 20 19 24 24 Si 1.86802 * 120.00114 * 203.57655 * 22 20 19 25 25 H 1.48496 * 109.47175 * 179.97438 * 24 22 20 26 26 H 1.48508 * 109.46715 * 59.99734 * 24 22 20 27 27 H 1.48492 * 109.46988 * 300.00051 * 24 22 20 28 28 H 1.09007 * 109.47194 * 299.72032 * 1 2 3 29 29 H 1.09007 * 109.47097 * 59.71415 * 1 2 3 30 30 H 1.08993 * 109.47668 * 179.71709 * 1 2 3 31 31 H 0.97003 * 119.99780 * 334.99477 * 6 4 2 32 32 H 1.08002 * 119.46492 * 180.24660 * 11 10 9 33 33 H 1.07996 * 120.27893 * 179.76179 * 12 11 10 34 34 H 1.07996 * 120.77643 * 180.02562 * 13 12 11 35 35 H 0.96700 * 114.00049 * 269.97233 * 15 14 13 36 36 H 1.08994 * 109.46222 * 181.38605 * 16 4 2 37 37 H 1.08997 * 109.45642 * 301.34364 * 16 4 2 38 38 H 1.09001 * 109.49839 * 58.58748 * 17 16 4 39 39 H 1.08991 * 109.49799 * 178.68591 * 17 16 4 40 40 H 1.08993 * 109.74295 * 295.11986 * 18 17 16 41 41 H 1.09001 * 109.66416 * 174.54897 * 18 17 16 42 42 H 0.96999 * 120.00127 * 5.83029 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2444 5 1 1.7660 -0.1695 -2.1366 6 7 1.4507 -2.0693 -1.3049 7 6 1.3278 -2.6990 -2.4902 8 8 1.7084 -2.1563 -3.5090 9 6 0.7301 -4.0497 -2.5510 10 7 0.3206 -4.6411 -1.4340 11 6 -0.2201 -5.8384 -1.4453 12 6 -0.3764 -6.5426 -2.6308 13 6 0.0390 -5.9720 -3.8202 14 6 0.6050 -4.6993 -3.7836 15 8 1.0265 -4.0993 -4.9248 16 6 3.5675 -0.8495 -1.1690 17 6 3.9569 -1.6657 0.0657 18 6 3.4656 -0.9403 1.3276 19 7 2.0225 -0.6980 1.1954 20 6 1.1536 -1.1099 2.1704 21 1 0.1459 -1.3974 1.9093 22 6 1.5681 -1.1578 3.4943 23 7 2.5721 -0.4081 3.8971 24 14 0.7011 -2.2864 4.7042 25 1 1.3297 -2.1534 6.0430 26 1 0.8177 -3.6924 4.2405 27 1 -0.7330 -1.9112 4.7907 28 1 -0.3634 0.5095 0.8925 29 1 -0.3634 0.5183 -0.8875 30 1 -0.3634 -1.0276 -0.0051 31 1 1.1467 -2.5022 -0.4918 32 1 -0.5441 -6.2837 -0.5162 33 1 -0.8190 -7.5276 -2.6247 34 1 -0.0727 -6.5006 -4.7553 35 1 1.9490 -4.2839 -5.1486 36 1 3.9378 -1.3475 -2.0651 37 1 4.0061 0.1459 -1.0995 38 1 3.4982 -2.6529 0.0087 39 1 5.0411 -1.7696 0.1060 40 1 3.9877 0.0107 1.4324 41 1 3.6531 -1.5609 2.2039 42 1 2.9674 0.2390 3.2923 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993250502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:36 Heat of formation + Delta-G solvation = -20.262883 kcal Electronic energy + Delta-G solvation = -26170.503871 eV Core-core repulsion = 22537.391284 eV Total energy + Delta-G solvation = -3633.112588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84521 -39.29214 -37.61911 -37.21670 -34.08702 -32.82813 -32.29653 -31.56320 -30.45437 -29.10717 -26.34561 -25.00067 -24.62225 -23.45192 -21.98188 -21.01632 -20.59406 -18.74551 -18.56421 -17.97490 -17.07802 -16.79972 -15.87071 -15.40751 -15.16453 -14.77017 -14.47835 -14.23322 -13.82151 -13.70726 -13.52507 -13.40852 -13.06115 -12.99128 -12.79472 -12.59205 -11.78934 -11.51752 -11.44258 -11.20443 -10.97729 -10.76386 -10.60075 -10.21285 -10.11686 -10.06642 -10.04354 -9.99704 -9.75578 -9.33052 -9.12163 -9.07878 -8.50871 -8.33215 -6.84996 -6.01795 -3.24704 0.49372 0.93513 2.88640 3.41194 3.50099 3.53126 3.70869 3.71405 3.97621 4.22644 4.58274 4.59057 4.74569 4.78941 5.18136 5.24024 5.30659 5.37192 5.50478 5.58723 5.65547 5.75012 5.77689 5.86695 6.07779 6.18552 6.21153 6.28607 6.38773 6.42108 6.53124 6.58245 6.67528 6.84963 6.98151 7.03752 7.11977 7.23098 7.40903 7.62412 8.05789 8.08571 8.58601 8.61682 9.12639 9.86447 10.31189 11.24340 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.005176 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.291791 B = 5407.938143 C = 6520.343905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.038 0.962 4 C 0.132 3.868 5 H 0.078 0.922 6 N -0.679 5.679 7 C 0.560 3.440 8 O -0.536 6.536 9 C 0.056 3.944 10 N -0.434 5.434 11 C 0.090 3.910 12 C -0.138 4.138 13 C -0.116 4.116 14 C 0.115 3.885 15 O -0.471 6.471 16 C -0.120 4.120 17 C -0.136 4.136 18 C 0.153 3.847 19 N -0.592 5.592 20 C -0.347 4.347 21 H 0.060 0.940 22 C -0.021 4.021 23 N -0.916 5.916 24 Si 1.062 2.938 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.420 0.580 32 H 0.166 0.834 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.395 0.605 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 -10.894 -13.370 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.055 0.945 4 C 0.026 3.974 5 H 0.096 0.904 6 N -0.330 5.330 7 C 0.344 3.656 8 O -0.414 6.414 9 C -0.083 4.083 10 N -0.146 5.146 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.142 4.142 14 C 0.066 3.934 15 O -0.280 6.280 16 C -0.159 4.159 17 C -0.175 4.175 18 C 0.027 3.973 19 N -0.317 5.317 20 C -0.476 4.476 21 H 0.078 0.922 22 C -0.223 4.223 23 N -0.556 5.556 24 Si 0.892 3.108 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.221 1.221 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.258 0.742 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.253 0.747 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.036 -10.329 -11.735 15.925 hybrid contribution 0.169 -0.356 -2.011 2.049 sum -2.867 -10.685 -13.746 17.645 Atomic orbital electron populations 1.21758 0.95361 1.01677 1.00303 1.20717 0.93693 0.93553 0.86667 0.94459 1.21580 0.92849 0.83068 0.99950 0.90434 1.45899 1.59728 1.18016 1.09330 1.17724 0.79458 0.84004 0.84406 1.90766 1.50387 1.65983 1.34222 1.21936 1.00580 0.96733 0.89010 1.67712 1.07391 1.10630 1.28894 1.22910 0.95529 0.90076 0.98548 1.22314 0.99293 1.01411 0.92799 1.21961 0.98684 0.93829 0.99711 1.19410 0.96982 0.90777 0.86255 1.84758 1.32871 1.72611 1.37767 1.21764 0.95497 1.00426 0.98175 1.22103 0.98926 0.99730 0.96732 1.21035 0.84258 0.96627 0.95389 1.44226 1.02525 1.65370 1.19549 1.19912 0.96938 1.42952 0.87802 0.92202 1.25828 1.00064 1.00512 0.95944 1.70770 1.26575 1.20359 1.37890 0.83561 0.75045 0.75939 0.76213 1.21299 1.22012 1.22070 0.91763 0.94327 0.92580 0.74178 0.81658 0.83969 0.83776 0.74657 0.92923 0.91828 0.92400 0.93327 0.96500 0.90502 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 7.75 37.15 0.29 -2.30 16 2 C 0.16 3.28 3.20 -67.60 -0.22 3.07 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.45 2.32 -67.81 -0.16 2.29 16 5 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 6 N -0.68 -12.50 3.45 -54.64 -0.19 -12.69 16 7 C 0.56 10.07 7.77 -12.34 -0.10 9.97 16 8 O -0.54 -10.45 14.80 -16.63 -0.25 -10.70 16 9 C 0.06 0.88 6.76 -82.88 -0.56 0.32 16 10 N -0.43 -6.48 9.54 -9.71 -0.09 -6.57 16 11 C 0.09 0.99 11.17 -17.55 -0.20 0.79 16 12 C -0.14 -1.19 10.10 -39.36 -0.40 -1.59 16 13 C -0.12 -1.11 10.12 -39.15 -0.40 -1.51 16 14 C 0.11 1.49 6.74 -38.56 -0.26 1.23 16 15 O -0.47 -6.05 11.58 -40.59 -0.47 -6.52 16 16 C -0.12 -2.15 5.58 -26.69 -0.15 -2.29 16 17 C -0.14 -2.59 5.95 -26.38 -0.16 -2.75 16 18 C 0.15 3.46 4.74 -3.48 -0.02 3.44 16 19 N -0.59 -13.84 2.46 -164.51 -0.41 -14.25 16 20 C -0.35 -9.00 8.43 -15.06 -0.13 -9.13 16 21 H 0.06 1.56 6.34 -52.49 -0.33 1.23 16 22 C -0.02 -0.57 4.70 -17.43 -0.08 -0.65 16 23 N -0.92 -26.64 12.51 55.49 0.69 -25.95 16 24 Si 1.06 24.59 29.98 -169.99 -5.10 19.49 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.06 1.33 7.64 -51.93 -0.40 0.94 16 29 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.06 1.12 6.38 -51.93 -0.33 0.78 16 31 H 0.42 8.29 7.10 -40.82 -0.29 8.00 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.40 3.51 9.06 45.56 0.41 3.92 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 41 H 0.08 1.96 6.50 -51.93 -0.34 1.62 16 42 H 0.27 7.90 6.73 -40.82 -0.27 7.62 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -31.84 338.55 -8.15 -39.99 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.92 Total: 11.19 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.52 Total: 0.89 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.01 Total: -59.45 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.72 Total: -17.22 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.84 -8.15 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993250502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.727 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds