Wall clock time and date at job start Fri Apr 10 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.58824 * 2 1 4 4 C 1.53191 * 109.59046 * 239.57186 * 2 1 3 5 5 H 1.09002 * 109.49346 * 65.62366 * 4 2 1 6 6 N 1.46503 * 109.49465 * 305.56651 * 4 2 1 7 7 C 1.34778 * 120.00240 * 155.00099 * 6 4 2 8 8 O 1.21552 * 119.99808 * 359.97438 * 7 6 4 9 9 C 1.47830 * 119.99955 * 179.97438 * 7 6 4 10 10 N 1.32856 * 119.78526 * 359.72283 * 9 7 6 11 11 C 1.31369 * 121.69263 * 179.75164 * 10 9 7 12 12 C 1.38772 * 121.07120 * 0.52932 * 11 10 9 13 13 C 1.38301 * 119.44040 * 359.73575 * 12 11 10 14 14 C 1.39338 * 118.44070 * 0.02562 * 13 12 11 15 15 O 1.35647 * 120.53866 * 180.02562 * 14 13 12 16 16 C 1.53037 * 109.31823 * 185.58115 * 4 2 1 17 17 C 1.53043 * 109.53810 * 61.36251 * 16 4 2 18 18 C 1.53625 * 109.24117 * 298.51263 * 17 16 4 19 19 N 1.46927 * 109.58617 * 120.28301 * 2 1 3 20 20 C 1.36938 * 120.62897 * 353.37041 * 19 2 1 21 21 H 1.08000 * 119.99801 * 31.15460 * 20 19 2 22 22 C 1.38811 * 120.00052 * 211.15407 * 20 19 2 23 23 N 1.31619 * 120.00079 * 23.57572 * 22 20 19 24 24 Si 1.86802 * 120.00114 * 203.57655 * 22 20 19 25 25 H 1.48496 * 109.47175 * 179.97438 * 24 22 20 26 26 H 1.48508 * 109.46715 * 59.99734 * 24 22 20 27 27 H 1.48492 * 109.46988 * 300.00051 * 24 22 20 28 28 H 1.09007 * 109.47194 * 299.72032 * 1 2 3 29 29 H 1.09007 * 109.47097 * 59.71415 * 1 2 3 30 30 H 1.08993 * 109.47668 * 179.71709 * 1 2 3 31 31 H 0.97003 * 119.99780 * 334.99477 * 6 4 2 32 32 H 1.08002 * 119.46492 * 180.24660 * 11 10 9 33 33 H 1.07996 * 120.27893 * 179.76179 * 12 11 10 34 34 H 1.07996 * 120.77643 * 180.02562 * 13 12 11 35 35 H 0.96700 * 114.00049 * 269.97233 * 15 14 13 36 36 H 1.08994 * 109.46222 * 181.38605 * 16 4 2 37 37 H 1.08997 * 109.45642 * 301.34364 * 16 4 2 38 38 H 1.09001 * 109.49839 * 58.58748 * 17 16 4 39 39 H 1.08991 * 109.49799 * 178.68591 * 17 16 4 40 40 H 1.08993 * 109.74295 * 295.11986 * 18 17 16 41 41 H 1.09001 * 109.66416 * 174.54897 * 18 17 16 42 42 H 0.96999 * 120.00127 * 5.83029 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2444 5 1 1.7660 -0.1695 -2.1366 6 7 1.4507 -2.0693 -1.3049 7 6 1.3278 -2.6990 -2.4902 8 8 1.7084 -2.1563 -3.5090 9 6 0.7301 -4.0497 -2.5510 10 7 0.3206 -4.6411 -1.4340 11 6 -0.2201 -5.8384 -1.4453 12 6 -0.3764 -6.5426 -2.6308 13 6 0.0390 -5.9720 -3.8202 14 6 0.6050 -4.6993 -3.7836 15 8 1.0265 -4.0993 -4.9248 16 6 3.5675 -0.8495 -1.1690 17 6 3.9569 -1.6657 0.0657 18 6 3.4656 -0.9403 1.3276 19 7 2.0225 -0.6980 1.1954 20 6 1.1536 -1.1099 2.1704 21 1 0.1459 -1.3974 1.9093 22 6 1.5681 -1.1578 3.4943 23 7 2.5721 -0.4081 3.8971 24 14 0.7011 -2.2864 4.7042 25 1 1.3297 -2.1534 6.0430 26 1 0.8177 -3.6924 4.2405 27 1 -0.7330 -1.9112 4.7907 28 1 -0.3634 0.5095 0.8925 29 1 -0.3634 0.5183 -0.8875 30 1 -0.3634 -1.0276 -0.0051 31 1 1.1467 -2.5022 -0.4918 32 1 -0.5441 -6.2837 -0.5162 33 1 -0.8190 -7.5276 -2.6247 34 1 -0.0727 -6.5006 -4.7553 35 1 1.9490 -4.2839 -5.1486 36 1 3.9378 -1.3475 -2.0651 37 1 4.0061 0.1459 -1.0995 38 1 3.4982 -2.6529 0.0087 39 1 5.0411 -1.7696 0.1060 40 1 3.9877 0.0107 1.4324 41 1 3.6531 -1.5609 2.2039 42 1 2.9674 0.2390 3.2923 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993250502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:36 Heat of formation + Delta-G solvation = -41.649662 kcal Electronic energy + Delta-G solvation = -26171.431272 eV Core-core repulsion = 22537.391284 eV Total energy + Delta-G solvation = -3634.039988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88840 -40.66603 -39.05938 -38.23055 -35.81152 -34.18580 -33.67333 -33.06053 -31.53660 -30.71038 -27.98826 -26.79662 -25.78437 -24.36303 -23.59992 -22.62573 -22.02416 -20.33209 -19.52340 -19.13265 -18.87839 -17.86475 -16.89118 -16.82680 -16.42772 -16.10700 -16.05054 -15.81902 -15.41360 -15.14728 -14.95784 -14.65140 -14.36901 -14.29661 -14.11018 -13.61536 -13.48037 -13.23493 -12.82332 -12.74574 -12.51195 -12.44179 -12.28810 -11.91480 -11.85273 -11.73491 -11.52866 -11.27437 -10.97056 -10.89143 -10.40871 -10.35382 -10.10982 -9.84296 -8.83902 -8.11523 -5.33166 -0.43260 0.13058 1.62267 1.69221 1.75307 1.87007 2.16686 2.69978 2.73799 3.04804 3.25611 3.30347 3.46647 3.77353 3.90124 3.92076 3.96203 4.01710 4.08014 4.24466 4.43459 4.47547 4.50467 4.55214 4.60602 4.82441 4.85375 4.87136 4.98632 5.00889 5.01667 5.07527 5.21713 5.28189 5.35674 5.40530 5.51317 5.60893 5.99942 6.49284 6.51317 6.64478 6.84360 7.12157 7.21534 7.85574 8.30763 9.11440 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.005176 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.291791 B = 5407.938143 C = 6520.343905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.157 3.843 3 H 0.035 0.965 4 C 0.139 3.861 5 H 0.081 0.919 6 N -0.682 5.682 7 C 0.558 3.442 8 O -0.559 6.559 9 C 0.016 3.984 10 N -0.469 5.469 11 C 0.078 3.922 12 C -0.111 4.111 13 C -0.109 4.109 14 C 0.109 3.891 15 O -0.486 6.486 16 C -0.113 4.113 17 C -0.121 4.121 18 C 0.160 3.840 19 N -0.602 5.602 20 C -0.336 4.336 21 H 0.059 0.941 22 C -0.074 4.074 23 N -0.948 5.948 24 Si 1.108 2.892 25 H -0.299 1.299 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.412 0.588 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.179 0.821 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.006 0.994 41 H 0.044 0.956 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -13.451 -15.004 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.051 3.949 3 H 0.053 0.947 4 C 0.033 3.967 5 H 0.099 0.901 6 N -0.332 5.332 7 C 0.344 3.656 8 O -0.439 6.439 9 C -0.121 4.121 10 N -0.181 5.181 11 C -0.083 4.083 12 C -0.130 4.130 13 C -0.135 4.135 14 C 0.060 3.940 15 O -0.298 6.298 16 C -0.151 4.151 17 C -0.160 4.160 18 C 0.034 3.966 19 N -0.327 5.327 20 C -0.466 4.466 21 H 0.077 0.923 22 C -0.270 4.270 23 N -0.590 5.590 24 Si 0.934 3.066 25 H -0.225 1.225 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.206 0.794 33 H 0.207 0.793 34 H 0.196 0.804 35 H 0.269 0.731 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.262 -12.883 -13.420 19.085 hybrid contribution 0.497 0.364 -1.590 1.705 sum -3.764 -12.519 -15.010 19.904 Atomic orbital electron populations 1.21645 0.94586 1.01275 1.00563 1.20847 0.94381 0.93403 0.86258 0.94699 1.21403 0.93242 0.83410 0.98674 0.90088 1.45866 1.60149 1.17797 1.09403 1.18166 0.78777 0.85018 0.83611 1.90728 1.51502 1.67003 1.34634 1.21628 1.03654 0.96201 0.90567 1.67597 1.08741 1.12619 1.29192 1.23473 0.94913 0.89173 1.00768 1.22795 0.96514 1.02509 0.91190 1.22335 0.97194 0.92328 1.01641 1.19633 0.97161 0.91880 0.85307 1.84704 1.34134 1.73283 1.37642 1.21709 0.95080 1.00772 0.97580 1.21924 0.99927 0.98776 0.95390 1.20871 0.84079 0.95814 0.95811 1.44366 1.02566 1.65969 1.19844 1.20096 0.97102 1.41161 0.88212 0.92350 1.27015 1.00509 1.01506 0.98001 1.70888 1.28512 1.21796 1.37791 0.82932 0.74761 0.75077 0.73812 1.22505 1.20519 1.20459 0.93538 0.91902 0.93271 0.75021 0.79400 0.79330 0.80386 0.73065 0.92173 0.90842 0.93364 0.91340 0.97559 0.93769 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 7.75 71.98 0.56 -4.22 16 2 C 0.16 6.46 3.20 44.97 0.14 6.61 16 3 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 4 C 0.14 5.13 2.32 45.07 0.10 5.24 16 5 H 0.08 2.96 7.58 -2.39 -0.02 2.94 16 6 N -0.68 -25.22 3.45 -445.05 -1.53 -26.75 16 7 C 0.56 20.10 7.77 86.78 0.67 20.78 16 8 O -0.56 -21.78 14.80 17.11 0.25 -21.52 16 9 C 0.02 0.50 6.76 41.93 0.28 0.78 16 10 N -0.47 -13.56 9.54 -184.63 -1.76 -15.32 16 11 C 0.08 1.50 11.17 84.89 0.95 2.45 16 12 C -0.11 -1.40 10.10 22.41 0.23 -1.18 16 13 C -0.11 -1.68 10.12 22.55 0.23 -1.45 16 14 C 0.11 2.66 6.74 22.93 0.15 2.81 16 15 O -0.49 -11.90 11.58 -68.63 -0.79 -12.70 16 16 C -0.11 -3.96 5.58 30.62 0.17 -3.79 16 17 C -0.12 -4.62 5.95 30.82 0.18 -4.44 16 18 C 0.16 7.43 4.74 86.51 0.41 7.84 16 19 N -0.60 -28.74 2.46 -674.40 -1.66 -30.40 16 20 C -0.34 -17.71 8.43 84.03 0.71 -17.00 16 21 H 0.06 3.07 6.34 -2.91 -0.02 3.05 16 22 C -0.07 -4.08 4.70 84.86 0.40 -3.68 16 23 N -0.95 -56.81 12.51 21.65 0.27 -56.53 16 24 Si 1.11 50.14 29.98 68.60 2.06 52.20 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.05 1.94 7.64 -2.38 -0.02 1.92 16 29 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.05 1.96 6.38 -2.39 -0.02 1.94 16 31 H 0.41 16.52 7.10 -92.71 -0.66 15.87 16 32 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.41 6.86 9.06 -74.06 -0.67 6.19 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.01 0.31 7.84 -2.39 -0.02 0.29 16 41 H 0.04 2.33 6.50 -2.39 -0.02 2.32 16 42 H 0.25 15.52 6.73 -92.71 -0.62 14.89 16 Total: -1.00 -71.40 338.55 1.90 -69.50 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.12 Total: 30.77 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.19 Total: 10.75 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -4.68 Total: -129.00 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.54 Total: -34.22 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.06 Total: 52.20 kcal Total: -71.40 1.90 -69.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993250502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.849 kcal (2) G-P(sol) polarization free energy of solvation -71.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds