Wall clock time and date at job start Fri Apr 10 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35692 * 119.44246 * 2 1 4 4 C 1.35275 * 121.00113 * 180.29929 * 3 2 1 5 5 C 1.41143 * 119.86699 * 359.48295 * 4 3 2 6 6 C 1.48454 * 120.53959 * 180.24962 * 5 4 3 7 7 O 1.21476 * 120.00222 * 216.18797 * 6 5 4 8 8 N 1.34776 * 119.99852 * 36.18379 * 6 5 4 9 9 C 1.46929 * 120.63123 * 5.83571 * 8 6 5 10 10 C 1.53622 * 108.54005 * 126.37006 * 9 8 6 11 11 C 1.53038 * 109.24426 * 54.85955 * 10 9 8 12 12 N 1.46496 * 109.45970 * 178.48721 * 11 10 9 13 13 C 1.36937 * 120.00365 * 275.06348 * 12 11 10 14 14 H 1.08003 * 119.99774 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00056 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99767 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47319 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46857 * 120.00220 * 17 15 13 20 20 H 1.48503 * 109.47232 * 240.00147 * 17 15 13 21 21 C 1.53044 * 109.53837 * 298.50944 * 11 10 9 22 22 C 1.46925 * 120.63162 * 186.11950 * 8 6 5 23 23 C 1.38301 * 118.92402 * 0.51030 * 5 4 3 24 24 C 1.34603 * 119.43748 * 180.02562 * 2 1 3 25 25 O 1.22006 * 119.96590 * 359.96724 * 24 2 1 26 26 H 1.09005 * 109.47022 * 89.99725 * 1 2 3 27 27 H 1.09002 * 109.47057 * 209.99720 * 1 2 3 28 28 H 1.08998 * 109.46948 * 329.99825 * 1 2 3 29 29 H 1.07999 * 119.50149 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.06119 * 179.72487 * 4 3 2 31 31 H 1.08995 * 109.58631 * 246.20327 * 9 8 6 32 32 H 1.08995 * 109.58427 * 6.62802 * 9 8 6 33 33 H 1.09003 * 109.63357 * 294.86329 * 10 9 8 34 34 H 1.08999 * 109.43110 * 174.72749 * 10 9 8 35 35 H 1.09004 * 109.44724 * 58.51841 * 11 10 9 36 36 H 0.97001 * 120.00006 * 95.07049 * 12 11 10 37 37 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.49541 * 301.41691 * 21 11 10 39 39 H 1.08996 * 109.50131 * 181.31833 * 21 11 10 40 40 H 1.09000 * 109.58826 * 353.37214 * 22 8 6 41 41 H 1.08998 * 109.59027 * 113.65030 * 22 8 6 42 42 H 1.08000 * 120.49343 * 179.72110 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0061 5 6 4.2201 0.0141 -0.0015 6 6 5.7045 0.0371 -0.0024 7 8 6.3246 -0.8050 -0.6204 8 7 6.3641 0.9924 0.6823 9 6 5.6349 1.9397 1.5365 10 6 6.2528 1.9049 2.9426 11 6 7.7549 2.1791 2.8405 12 7 8.3427 2.1828 4.1823 13 6 8.3176 3.3247 4.9377 14 1 7.8640 4.2225 4.5444 15 6 8.8750 3.3283 6.2090 16 7 9.4282 2.2344 6.6881 17 14 8.8400 4.8858 7.2397 18 1 8.1659 5.9681 6.4786 19 1 8.0959 4.6293 8.4990 20 1 10.2300 5.2979 7.5613 21 6 8.4180 1.0883 1.9963 22 6 7.8253 1.1102 0.5839 23 6 3.5360 -1.1878 -0.0015 24 6 2.1265 -1.1722 -0.0005 25 8 1.5055 -2.2224 -0.0004 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.5748 2.1069 0.0004 30 1 3.9996 2.1676 -0.0105 31 1 5.7187 2.9444 1.1223 32 1 4.5854 1.6505 1.5898 33 1 6.0915 0.9238 3.3894 34 1 5.7849 2.6691 3.5633 35 1 7.9156 3.1496 2.3709 36 1 8.7499 1.3764 4.5357 37 1 9.8174 2.2368 7.5766 38 1 8.2364 0.1148 2.4520 39 1 9.4913 1.2711 1.9434 40 1 8.2214 0.2736 0.0084 41 1 8.0840 2.0475 0.0913 42 1 4.0737 -2.1245 -0.0026 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996724461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:40 Heat of formation + Delta-G solvation = -9.367809 kcal Electronic energy + Delta-G solvation = -24927.650109 eV Core-core repulsion = 21295.009967 eV Total energy + Delta-G solvation = -3632.640142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70833 -40.08703 -37.49171 -37.18152 -34.99998 -34.45364 -32.08851 -30.95154 -30.26239 -29.38514 -28.15876 -25.46542 -24.39512 -23.65984 -22.94365 -22.32766 -20.50344 -19.29403 -18.10073 -17.60174 -17.22801 -17.08458 -16.44442 -16.07065 -15.56603 -15.12590 -14.89538 -14.47672 -14.28208 -13.78607 -13.62960 -13.59200 -13.53014 -13.21139 -13.18264 -12.87616 -12.56326 -12.22728 -12.09439 -11.86340 -11.49950 -11.03780 -10.94586 -10.85643 -10.59843 -10.52545 -10.33723 -10.24478 -9.88842 -9.80938 -9.70972 -8.96473 -8.62037 -8.28397 -7.02446 -5.82005 -3.11566 0.24291 1.36724 2.27484 2.61007 2.88282 3.38603 3.38983 3.43814 3.46772 4.10124 4.20000 4.32412 4.53177 4.73974 4.77278 4.83377 4.95155 5.06193 5.20264 5.23715 5.27638 5.30966 5.43250 5.47390 5.56897 5.64215 5.66645 5.85326 5.88506 5.93095 6.05931 6.16212 6.30611 6.33490 6.45023 6.55126 6.67697 6.82544 6.98277 7.33996 7.63868 7.66447 8.01983 8.36016 9.47348 10.04840 10.39203 11.40535 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.003195 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.333284 B = 8762.089011 C = 9534.847663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.497 5.497 3 C 0.128 3.872 4 C -0.215 4.215 5 C -0.023 4.023 6 C 0.554 3.446 7 O -0.532 6.532 8 N -0.595 5.595 9 C 0.093 3.907 10 C -0.151 4.151 11 C 0.179 3.821 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.140 4.140 22 C 0.116 3.884 23 C -0.178 4.178 24 C 0.514 3.486 25 O -0.545 6.545 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 1.145 -15.549 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.209 5.209 3 C 0.002 3.998 4 C -0.238 4.238 5 C -0.030 4.030 6 C 0.341 3.659 7 O -0.410 6.410 8 N -0.327 5.327 9 C -0.030 4.030 10 C -0.193 4.193 11 C 0.068 3.932 12 N -0.365 5.365 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.179 4.179 22 C -0.007 4.007 23 C -0.201 4.201 24 C 0.315 3.685 25 O -0.427 6.427 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.102 0.208 -15.780 22.546 hybrid contribution 0.155 0.782 0.952 1.241 sum -15.946 0.990 -14.828 21.798 Atomic orbital electron populations 1.22198 0.76968 1.05205 1.03990 1.45378 1.09493 1.06791 1.59248 1.21854 0.93461 0.89447 0.95044 1.20897 0.92490 0.98931 1.11438 1.20467 0.93924 0.94002 0.94599 1.18356 0.86625 0.81205 0.79752 1.90777 1.68436 1.37489 1.44273 1.48071 1.08205 1.31463 1.44967 1.22455 0.96635 0.92242 0.91664 1.22777 1.00059 1.02670 0.93753 1.20173 0.90050 0.95729 0.87214 1.42447 1.68826 1.12696 1.12492 1.19264 1.31562 0.90260 0.96097 0.91099 1.24760 1.01190 0.97228 0.97734 1.69670 1.43743 1.26561 1.17938 0.86141 0.77235 0.82549 0.80375 1.20548 1.21890 1.21866 1.22213 1.00709 1.00745 0.94197 1.21694 0.78118 1.02621 0.98221 1.22650 0.92264 0.99375 1.05832 1.17051 0.88852 0.82887 0.79676 1.90965 1.69356 1.29745 1.52645 0.90477 0.88678 0.89430 0.81400 0.82505 0.91057 0.89107 0.92125 0.90533 0.93355 0.78234 0.93499 0.91714 0.90382 0.89172 0.91147 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.34 59.85 0.62 0.93 16 2 N -0.50 -4.22 2.98 -127.13 -0.38 -4.60 16 3 C 0.13 0.78 10.25 -16.90 -0.17 0.60 16 4 C -0.21 -1.71 7.36 -39.54 -0.29 -2.00 16 5 C -0.02 -0.27 5.28 -104.56 -0.55 -0.82 16 6 C 0.55 7.81 7.41 -12.05 -0.09 7.72 16 7 O -0.53 -9.23 16.30 5.39 0.09 -9.14 16 8 N -0.59 -7.74 2.97 -173.39 -0.51 -8.25 16 9 C 0.09 1.06 4.85 -3.49 -0.02 1.04 16 10 C -0.15 -2.37 5.67 -26.39 -0.15 -2.52 16 11 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16 12 N -0.72 -17.25 5.12 -53.38 -0.27 -17.53 16 13 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 14 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 17 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 22 C 0.12 1.54 6.44 -3.71 -0.02 1.52 16 23 C -0.18 -2.29 9.64 -38.53 -0.37 -2.66 16 24 C 0.51 6.49 7.42 -15.31 -0.11 6.38 16 25 O -0.55 -8.65 16.62 4.91 0.08 -8.57 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.66 7.37 -51.93 -0.38 0.28 16 28 H 0.09 0.19 8.00 -51.93 -0.42 -0.22 16 29 H 0.17 0.29 8.02 -52.49 -0.42 -0.13 16 30 H 0.16 0.96 6.21 -52.48 -0.33 0.63 16 31 H 0.07 0.68 8.07 -51.93 -0.42 0.27 16 32 H 0.09 0.88 4.51 -51.93 -0.23 0.65 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 36 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.16 2.16 8.04 -52.49 -0.42 1.74 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -35.05 344.37 -7.65 -42.70 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.80 Total: 6.47 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.74 Total: 3.92 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.44 Total: -57.22 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.05 -7.65 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996724461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.329 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds