Wall clock time and date at job start Fri Apr 10 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35683 * 116.99959 * 2 1 4 4 C 1.38890 * 119.62398 * 179.97438 * 3 2 1 5 5 C 1.39577 * 118.94853 * 179.97438 * 4 3 2 6 6 C 1.48159 * 120.89535 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00093 * 40.51827 * 6 5 4 8 8 N 1.34775 * 120.00356 * 220.51695 * 6 5 4 9 9 C 1.46928 * 120.62763 * 5.54631 * 8 6 5 10 10 C 1.53630 * 108.54082 * 126.36594 * 9 8 6 11 11 C 1.53046 * 109.23898 * 54.85896 * 10 9 8 12 12 N 1.46505 * 109.45566 * 178.48728 * 11 10 9 13 13 C 1.36930 * 119.99973 * 275.06384 * 12 11 10 14 14 H 1.08000 * 120.00476 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00012 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00348 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99719 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00227 * 17 15 13 19 19 H 1.48504 * 109.46958 * 210.00122 * 17 15 13 20 20 H 1.48494 * 109.47352 * 330.00029 * 17 15 13 21 21 C 1.53035 * 109.53868 * 298.50638 * 11 10 9 22 22 C 1.46922 * 120.63488 * 185.82355 * 8 6 5 23 23 C 1.39966 * 118.21694 * 0.02562 * 5 4 3 24 24 C 1.37984 * 119.13130 * 359.97438 * 23 5 4 25 25 N 1.31908 * 120.97823 * 359.74999 * 24 23 5 26 26 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47904 * 300.00428 * 1 2 3 28 28 H 1.09005 * 109.46843 * 60.00434 * 1 2 3 29 29 H 1.08001 * 120.52750 * 359.95163 * 4 3 2 30 30 H 1.08999 * 109.58932 * 246.19894 * 9 8 6 31 31 H 1.08998 * 109.58605 * 6.62714 * 9 8 6 32 32 H 1.08996 * 109.63995 * 294.86429 * 10 9 8 33 33 H 1.09007 * 109.42990 * 174.72135 * 10 9 8 34 34 H 1.09005 * 109.44871 * 58.52364 * 11 10 9 35 35 H 0.96998 * 119.99816 * 95.07419 * 12 11 10 36 36 H 0.96991 * 120.00278 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.49743 * 301.41933 * 21 11 10 38 38 H 1.08998 * 109.49954 * 181.31604 * 21 11 10 39 39 H 1.09003 * 109.58515 * 353.37879 * 22 8 6 40 40 H 1.09000 * 109.58566 * 113.65278 * 22 8 6 41 41 H 1.07996 * 120.43528 * 180.02562 * 23 5 4 42 42 H 1.08002 * 119.50640 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4324 1.2725 0.0005 5 6 4.0513 2.5236 0.0000 6 6 5.5282 2.6417 0.0011 7 8 6.1982 1.8921 -0.6814 8 7 6.1287 3.5805 0.7591 9 6 5.3437 4.4132 1.6806 10 6 5.9641 4.3089 3.0821 11 6 7.4465 4.6818 3.0065 12 7 8.0345 4.6189 4.3469 13 6 7.9401 5.6960 5.1871 14 1 7.4318 6.5917 4.8620 15 6 8.4977 5.6366 6.4570 16 7 8.4065 6.6717 7.2649 17 14 9.3775 4.0876 7.0192 18 1 10.8161 4.1783 6.6622 19 1 9.2406 3.9472 8.4912 20 1 8.7753 2.9061 6.3511 21 6 8.1744 3.7014 2.0839 22 6 7.5798 3.7948 0.6752 23 6 3.2394 3.6636 -0.0005 24 6 1.8679 3.5116 -0.0010 25 7 1.3178 2.3127 -0.0060 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 4.0230 0.3683 0.0017 30 1 5.3651 5.4499 1.3446 31 1 4.3139 4.0569 1.7078 32 1 5.8640 3.2886 3.4521 33 1 5.4508 4.9934 3.7577 34 1 7.5467 5.6934 2.6130 35 1 8.4909 3.8144 4.6390 36 1 8.7958 6.6301 8.1522 37 1 8.0534 2.6868 2.4632 38 1 9.2342 3.9534 2.0489 39 1 8.0258 3.0305 0.0388 40 1 7.7798 4.7811 0.2565 41 1 3.6804 4.6494 -0.0014 42 1 1.2356 4.3872 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996747645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:42 Heat of formation + Delta-G solvation = -9.320184 kcal Electronic energy + Delta-G solvation = -24824.047210 eV Core-core repulsion = 21191.409134 eV Total energy + Delta-G solvation = -3632.638077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23480 -39.97974 -38.09477 -37.50266 -34.77747 -33.18406 -32.03151 -31.29906 -30.59766 -29.83732 -27.66636 -25.75409 -24.23860 -23.68937 -22.99130 -22.16403 -20.67892 -19.68926 -18.38148 -17.64716 -17.50030 -16.54882 -16.33088 -16.22028 -15.88327 -15.26809 -14.89331 -14.58203 -14.40931 -14.11628 -13.86212 -13.73582 -13.56343 -13.30992 -13.02923 -12.64964 -12.45963 -12.18149 -12.08536 -11.88588 -11.51036 -11.14840 -11.05505 -10.95982 -10.64604 -10.47684 -10.29324 -10.18891 -9.95951 -9.75258 -9.64098 -9.00124 -8.81272 -8.70575 -7.34086 -5.82811 -3.18934 0.51585 0.81292 2.44438 2.69423 2.97816 3.34161 3.37500 3.42353 3.45655 3.94310 4.15922 4.54353 4.59905 4.70994 4.76054 4.94637 4.98084 5.00999 5.02119 5.14218 5.23129 5.30090 5.34656 5.41092 5.43485 5.49897 5.56606 5.73296 5.76407 5.83273 5.94003 6.01759 6.08306 6.19679 6.29949 6.43950 6.71277 6.86341 6.87381 7.25433 7.46309 7.92161 7.93993 8.36249 9.14211 9.87112 10.06623 11.35322 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003197 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.996522 B = 8756.613298 C = 9183.314637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.320 3.680 4 C -0.139 4.139 5 C -0.042 4.042 6 C 0.559 3.441 7 O -0.533 6.533 8 N -0.595 5.595 9 C 0.096 3.904 10 C -0.151 4.151 11 C 0.183 3.817 12 N -0.748 5.748 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.143 4.143 22 C 0.117 3.883 23 C -0.182 4.182 24 C 0.138 3.862 25 N -0.530 5.530 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.149 0.851 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -8.178 -16.941 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.141 3.859 4 C -0.161 4.161 5 C -0.053 4.053 6 C 0.346 3.654 7 O -0.411 6.411 8 N -0.328 5.328 9 C -0.027 4.027 10 C -0.192 4.192 11 C 0.073 3.927 12 N -0.390 5.390 13 C -0.375 4.375 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.182 4.182 22 C -0.006 4.006 23 C -0.203 4.203 24 C -0.017 4.017 25 N -0.254 5.254 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.166 0.834 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.380 -8.682 -17.173 24.022 hybrid contribution 1.177 -0.804 0.738 1.605 sum -13.202 -9.485 -16.435 23.117 Atomic orbital electron populations 1.22888 0.76953 1.03096 1.02558 1.86259 1.23104 1.24187 1.87714 1.19643 0.88924 0.84885 0.92491 1.21047 0.92033 0.98716 1.04283 1.20090 0.94024 0.93412 0.97769 1.18139 0.86580 0.80435 0.80205 1.90785 1.65120 1.42333 1.42850 1.48072 1.08958 1.35644 1.40077 1.22352 0.95479 0.94676 0.90214 1.22738 0.99827 1.02559 0.94111 1.20152 0.89979 0.96825 0.85695 1.42799 1.67454 1.16160 1.12578 1.19052 1.30845 0.93462 0.94161 0.89150 1.24675 1.00745 0.97052 0.96558 1.69693 1.50180 1.29541 1.08626 0.86564 0.80121 0.83946 0.77955 1.21044 1.21743 1.20367 1.22252 1.00681 1.00941 0.94346 1.21675 0.78483 1.02276 0.98119 1.22299 0.94789 0.99352 1.03850 1.22392 0.92476 0.93659 0.93139 1.67191 1.41209 0.98922 1.18071 0.88514 0.92112 0.92217 0.83260 0.90749 0.89513 0.92249 0.89990 0.92389 0.80616 0.93006 0.91826 0.90234 0.89060 0.90891 0.83362 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.34 10.47 -18.75 -0.20 -3.54 16 3 C 0.32 3.73 7.49 -17.16 -0.13 3.60 16 4 C -0.14 -1.68 9.70 -38.84 -0.38 -2.06 16 5 C -0.04 -0.50 5.13 -104.68 -0.54 -1.04 16 6 C 0.56 7.75 7.37 -12.19 -0.09 7.66 16 7 O -0.53 -8.97 16.38 5.35 0.09 -8.88 16 8 N -0.60 -7.61 2.97 -173.50 -0.51 -8.13 16 9 C 0.10 1.12 4.98 -3.48 -0.02 1.10 16 10 C -0.15 -2.34 5.67 -26.38 -0.15 -2.49 16 11 C 0.18 3.20 2.73 -67.89 -0.19 3.01 16 12 N -0.75 -16.79 4.92 -53.38 -0.26 -17.05 16 13 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 16 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 17 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 21 C -0.14 -2.11 5.55 -26.61 -0.15 -2.26 16 22 C 0.12 1.49 6.44 -3.71 -0.02 1.46 16 23 C -0.18 -1.69 7.49 -39.03 -0.29 -1.98 16 24 C 0.14 1.21 11.17 -17.61 -0.20 1.01 16 25 N -0.53 -5.69 9.18 -13.38 -0.12 -5.81 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.90 4.74 -51.93 -0.25 0.66 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.15 1.08 6.69 -52.49 -0.35 0.73 16 42 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -33.32 344.21 -6.96 -40.28 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.85 Total: 6.13 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.35 Total: 2.66 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.13 Total: -58.86 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.11 Total: -12.42 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.32 -6.96 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996747645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.959 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds