Wall clock time and date at job start Fri Apr 10 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35683 * 116.99959 * 2 1 4 4 C 1.38890 * 119.62398 * 179.97438 * 3 2 1 5 5 C 1.39577 * 118.94853 * 179.97438 * 4 3 2 6 6 C 1.48159 * 120.89535 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00093 * 40.51827 * 6 5 4 8 8 N 1.34775 * 120.00356 * 220.51695 * 6 5 4 9 9 C 1.46928 * 120.62763 * 5.54631 * 8 6 5 10 10 C 1.53630 * 108.54082 * 126.36594 * 9 8 6 11 11 C 1.53046 * 109.23898 * 54.85896 * 10 9 8 12 12 N 1.46505 * 109.45566 * 178.48728 * 11 10 9 13 13 C 1.36930 * 119.99973 * 275.06384 * 12 11 10 14 14 H 1.08000 * 120.00476 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00012 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00348 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99719 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00227 * 17 15 13 19 19 H 1.48504 * 109.46958 * 210.00122 * 17 15 13 20 20 H 1.48494 * 109.47352 * 330.00029 * 17 15 13 21 21 C 1.53035 * 109.53868 * 298.50638 * 11 10 9 22 22 C 1.46922 * 120.63488 * 185.82355 * 8 6 5 23 23 C 1.39966 * 118.21694 * 0.02562 * 5 4 3 24 24 C 1.37984 * 119.13130 * 359.97438 * 23 5 4 25 25 N 1.31908 * 120.97823 * 359.74999 * 24 23 5 26 26 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47904 * 300.00428 * 1 2 3 28 28 H 1.09005 * 109.46843 * 60.00434 * 1 2 3 29 29 H 1.08001 * 120.52750 * 359.95163 * 4 3 2 30 30 H 1.08999 * 109.58932 * 246.19894 * 9 8 6 31 31 H 1.08998 * 109.58605 * 6.62714 * 9 8 6 32 32 H 1.08996 * 109.63995 * 294.86429 * 10 9 8 33 33 H 1.09007 * 109.42990 * 174.72135 * 10 9 8 34 34 H 1.09005 * 109.44871 * 58.52364 * 11 10 9 35 35 H 0.96998 * 119.99816 * 95.07419 * 12 11 10 36 36 H 0.96991 * 120.00278 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.49743 * 301.41933 * 21 11 10 38 38 H 1.08998 * 109.49954 * 181.31604 * 21 11 10 39 39 H 1.09003 * 109.58515 * 353.37879 * 22 8 6 40 40 H 1.09000 * 109.58566 * 113.65278 * 22 8 6 41 41 H 1.07996 * 120.43528 * 180.02562 * 23 5 4 42 42 H 1.08002 * 119.50640 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4324 1.2725 0.0005 5 6 4.0513 2.5236 0.0000 6 6 5.5282 2.6417 0.0011 7 8 6.1982 1.8921 -0.6814 8 7 6.1287 3.5805 0.7591 9 6 5.3437 4.4132 1.6806 10 6 5.9641 4.3089 3.0821 11 6 7.4465 4.6818 3.0065 12 7 8.0345 4.6189 4.3469 13 6 7.9401 5.6960 5.1871 14 1 7.4318 6.5917 4.8620 15 6 8.4977 5.6366 6.4570 16 7 8.4065 6.6717 7.2649 17 14 9.3775 4.0876 7.0192 18 1 10.8161 4.1783 6.6622 19 1 9.2406 3.9472 8.4912 20 1 8.7753 2.9061 6.3511 21 6 8.1744 3.7014 2.0839 22 6 7.5798 3.7948 0.6752 23 6 3.2394 3.6636 -0.0005 24 6 1.8679 3.5116 -0.0010 25 7 1.3178 2.3127 -0.0060 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 4.0230 0.3683 0.0017 30 1 5.3651 5.4499 1.3446 31 1 4.3139 4.0569 1.7078 32 1 5.8640 3.2886 3.4521 33 1 5.4508 4.9934 3.7577 34 1 7.5467 5.6934 2.6130 35 1 8.4909 3.8144 4.6390 36 1 8.7958 6.6301 8.1522 37 1 8.0534 2.6868 2.4632 38 1 9.2342 3.9534 2.0489 39 1 8.0258 3.0305 0.0388 40 1 7.7798 4.7811 0.2565 41 1 3.6804 4.6494 -0.0014 42 1 1.2356 4.3872 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996747645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:41 Heat of formation + Delta-G solvation = -33.780016 kcal Electronic energy + Delta-G solvation = -24825.107868 eV Core-core repulsion = 21191.409134 eV Total energy + Delta-G solvation = -3633.698734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10923 -40.95520 -39.01664 -38.64528 -36.32964 -34.30533 -33.63151 -32.26693 -31.61594 -31.40491 -28.33316 -27.02751 -25.40148 -24.75443 -24.05728 -23.55880 -21.91532 -20.83239 -19.67963 -19.11270 -18.45349 -17.52797 -17.14419 -17.02400 -16.85515 -16.67161 -16.28576 -15.87761 -15.40852 -15.19982 -14.97753 -14.91242 -14.67223 -14.49833 -14.38270 -14.10071 -13.55771 -13.40555 -13.13139 -12.93373 -12.73574 -12.61208 -12.27838 -12.15713 -12.14251 -11.97617 -11.77849 -11.48218 -11.35289 -11.06205 -10.93816 -10.63956 -9.80113 -9.59759 -9.28972 -8.00885 -5.33383 -0.34157 0.04753 1.38566 1.39806 1.45957 1.47115 1.77137 2.14464 2.48889 2.65280 3.13976 3.30399 3.33543 3.53900 3.81581 3.85199 3.92466 4.02426 4.10015 4.13358 4.30177 4.37371 4.41960 4.44386 4.56624 4.59084 4.67173 4.72318 4.76395 4.78473 4.82890 4.93611 4.99196 5.04484 5.21873 5.28772 5.44309 5.56175 5.79951 6.13492 6.21412 6.23735 6.70157 6.88911 7.09427 7.86546 8.03827 9.20440 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003197 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.996522 B = 8756.613298 C = 9183.314637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.310 3.690 4 C -0.158 4.158 5 C -0.055 4.055 6 C 0.560 3.440 7 O -0.570 6.570 8 N -0.593 5.593 9 C 0.105 3.895 10 C -0.144 4.144 11 C 0.175 3.825 12 N -0.754 5.754 13 C -0.221 4.221 14 H 0.065 0.935 15 C -0.064 4.064 16 N -0.983 5.983 17 Si 0.949 3.051 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.258 1.258 21 C -0.133 4.133 22 C 0.121 3.879 23 C -0.174 4.174 24 C 0.145 3.855 25 N -0.536 5.536 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 -8.333 -18.426 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.131 3.869 4 C -0.180 4.180 5 C -0.065 4.065 6 C 0.349 3.651 7 O -0.450 6.450 8 N -0.324 5.324 9 C -0.017 4.017 10 C -0.185 4.185 11 C 0.068 3.932 12 N -0.396 5.396 13 C -0.352 4.352 14 H 0.083 0.917 15 C -0.255 4.255 16 N -0.634 5.634 17 Si 0.777 3.223 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.183 1.183 21 C -0.172 4.172 22 C -0.002 4.002 23 C -0.194 4.194 24 C -0.010 4.010 25 N -0.261 5.261 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.192 0.808 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.564 -8.866 -18.711 25.903 hybrid contribution 1.444 -0.698 1.118 1.955 sum -14.120 -9.564 -17.593 24.502 Atomic orbital electron populations 1.23107 0.75319 1.04772 1.02613 1.86237 1.24803 1.24235 1.87661 1.19710 0.88852 0.85461 0.92865 1.21034 0.92511 0.98718 1.05753 1.20020 0.93026 0.94319 0.99176 1.18422 0.87354 0.79743 0.79628 1.90765 1.66130 1.43605 1.44459 1.48113 1.09053 1.35427 1.39811 1.22386 0.95721 0.96130 0.87507 1.22546 0.98284 1.01219 0.96448 1.20434 0.91268 0.97785 0.83762 1.42882 1.67963 1.14875 1.13908 1.19044 1.28255 0.93588 0.94332 0.91679 1.25416 1.02792 1.00189 0.97114 1.69858 1.52512 1.32000 1.09057 0.85504 0.79023 0.80899 0.76873 1.20625 1.22646 1.18276 1.22128 1.00825 0.99414 0.94838 1.21664 0.78438 1.03506 0.96551 1.22578 0.94849 0.99445 1.02497 1.23083 0.92815 0.94066 0.91043 1.67289 1.41319 0.99347 1.18122 0.86149 0.92141 0.91967 0.84379 0.87986 0.87704 0.93519 0.91486 0.92392 0.80554 0.93495 0.92729 0.89760 0.89332 0.88583 0.80820 0.77686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.67 16 2 O -0.32 -6.87 10.47 -90.02 -0.94 -7.81 16 3 C 0.31 6.93 7.49 84.80 0.63 7.57 16 4 C -0.16 -3.78 9.70 22.75 0.22 -3.56 16 5 C -0.05 -1.21 5.13 -19.90 -0.10 -1.31 16 6 C 0.56 14.69 7.37 86.88 0.64 15.33 16 7 O -0.57 -18.89 16.38 -3.76 -0.06 -18.95 16 8 N -0.59 -13.73 2.97 -821.11 -2.44 -16.17 16 9 C 0.10 2.12 4.98 86.51 0.43 2.55 16 10 C -0.14 -4.22 5.67 30.82 0.17 -4.05 16 11 C 0.18 5.85 2.73 45.02 0.12 5.97 16 12 N -0.75 -33.12 4.92 -322.80 -1.59 -34.71 16 13 C -0.22 -11.94 10.41 84.04 0.87 -11.06 16 14 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 15 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 16 N -0.98 -61.70 13.97 21.65 0.30 -61.40 16 17 Si 0.95 45.05 27.74 68.60 1.90 46.95 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 21 C -0.13 -3.68 5.55 30.67 0.17 -3.51 16 22 C 0.12 2.79 6.44 86.36 0.56 3.35 16 23 C -0.17 -2.62 7.49 22.63 0.17 -2.45 16 24 C 0.15 2.01 11.17 84.62 0.94 2.96 16 25 N -0.54 -10.33 9.18 -309.13 -2.84 -13.17 16 26 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 28 H 0.06 0.81 8.10 -2.38 -0.02 0.79 16 29 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.11 1.81 4.74 -2.39 -0.01 1.80 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.06 1.96 8.08 -2.38 -0.02 1.94 16 35 H 0.36 15.74 5.66 -92.71 -0.52 15.22 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.18 7.00 -2.39 -0.02 2.16 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.17 1.70 6.69 -2.91 -0.02 1.68 16 42 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -73.73 344.21 1.27 -72.45 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.45 Total: 22.53 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.48 Total: 10.27 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.56 Total: -125.45 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.00 Total: -26.76 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Total: -73.73 1.27 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996747645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.675 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds