Wall clock time and date at job start Fri Apr 10 2020 17:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34596 * 119.47860 * 2 1 4 4 C 1.37999 * 120.45764 * 179.77093 * 3 2 1 5 5 C 1.47460 * 120.25317 * 180.23039 * 4 3 2 6 6 O 1.21603 * 119.99844 * 255.11772 * 5 4 3 7 7 N 1.34772 * 120.00205 * 75.12682 * 5 4 3 8 8 C 1.46929 * 120.62773 * 4.88006 * 7 5 4 9 9 C 1.53634 * 108.54077 * 126.36994 * 8 7 5 10 10 C 1.53046 * 109.23706 * 54.85927 * 9 8 7 11 11 N 1.46502 * 109.45416 * 178.48812 * 10 9 8 12 12 C 1.36933 * 120.00103 * 275.06643 * 11 10 9 13 13 H 1.07999 * 120.00401 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99813 * 180.02562 * 12 11 10 15 15 N 1.31624 * 120.00415 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99840 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46925 * 120.00487 * 16 14 12 19 19 H 1.48504 * 109.47199 * 240.00115 * 16 14 12 20 20 C 1.53037 * 109.53859 * 298.50641 * 10 9 8 21 21 C 1.46922 * 120.63266 * 185.16588 * 7 5 4 22 22 C 1.41592 * 119.48665 * 0.47575 * 4 3 2 23 23 C 1.35978 * 119.01149 * 359.78017 * 22 4 3 24 24 C 1.34545 * 119.48098 * 180.27193 * 2 1 3 25 25 O 1.21963 * 119.74318 * 359.97438 * 24 2 1 26 26 H 1.09005 * 109.46960 * 179.72652 * 1 2 3 27 27 H 1.08996 * 109.47057 * 59.72814 * 1 2 3 28 28 H 1.08997 * 109.46982 * 299.72989 * 1 2 3 29 29 H 1.08005 * 119.77089 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.59102 * 246.19987 * 8 7 5 31 31 H 1.09004 * 109.58576 * 6.63366 * 8 7 5 32 32 H 1.08992 * 109.63393 * 294.86517 * 9 8 7 33 33 H 1.08999 * 109.42854 * 174.72312 * 9 8 7 34 34 H 1.08991 * 109.45138 * 58.52785 * 10 9 8 35 35 H 0.97006 * 119.99442 * 95.06947 * 11 10 9 36 36 H 0.96997 * 119.99941 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.50142 * 301.42134 * 20 10 9 38 38 H 1.08992 * 109.52550 * 181.33469 * 20 10 9 39 39 H 1.09000 * 109.58875 * 353.36841 * 21 7 5 40 40 H 1.08995 * 109.58600 * 113.65417 * 21 7 5 41 41 H 1.08001 * 120.49948 * 179.79540 * 22 4 3 42 42 H 1.07995 * 120.25271 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1953 0.0048 5 6 4.2282 2.4816 0.0099 6 8 4.7649 2.8817 -1.0053 7 7 4.2926 3.2136 1.1396 8 6 3.7423 2.6955 2.3996 9 6 4.8366 2.7650 3.4758 10 6 5.3667 4.1980 3.5640 11 7 6.3853 4.2777 4.6139 12 6 6.0119 4.4738 5.9167 13 1 4.9665 4.5701 6.1702 14 6 6.9771 4.5498 6.9114 15 7 8.2513 4.4339 6.6023 16 14 6.4677 4.8179 8.6885 17 1 4.9882 4.9159 8.7700 18 1 6.9340 3.6756 9.5148 19 1 7.0761 6.0750 9.1935 20 6 5.9848 4.5986 2.2225 21 6 4.9086 4.5474 1.1334 22 6 4.2251 -0.0251 -0.0006 23 6 3.5345 -1.1965 -0.0057 24 6 2.1272 -1.1712 -0.0056 25 8 1.5031 -2.2191 -0.0101 26 1 -0.3633 -1.0277 -0.0049 27 1 -0.3633 0.5180 -0.8875 28 1 -0.3633 0.5096 0.8924 29 1 1.5751 2.0999 0.0004 30 1 2.8890 3.3021 2.7026 31 1 3.4277 1.6608 2.2629 32 1 5.6518 2.0910 3.2132 33 1 4.4175 2.4723 4.4384 34 1 4.5461 4.8746 3.8022 35 1 7.3243 4.1916 4.3861 36 1 8.9257 4.4874 7.2974 37 1 6.7893 3.9073 1.9716 38 1 6.3834 5.6106 2.2927 39 1 5.3638 4.7351 0.1609 40 1 4.1480 5.3021 1.3326 41 1 5.3051 -0.0257 -0.0003 42 1 4.0618 -2.1389 -0.0094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996761349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:44 Heat of formation + Delta-G solvation = -17.357391 kcal Electronic energy + Delta-G solvation = -24974.650493 eV Core-core repulsion = 21341.663897 eV Total energy + Delta-G solvation = -3632.986596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79043 -40.02982 -37.55857 -37.01391 -34.96560 -34.52899 -32.18536 -31.13651 -30.21266 -29.16950 -28.16253 -25.36478 -24.37861 -23.44475 -23.07274 -22.43018 -20.64791 -19.37042 -17.96858 -17.81519 -17.14644 -16.99406 -16.57102 -16.23094 -15.65281 -14.90562 -14.85977 -14.60005 -14.19626 -13.80525 -13.68302 -13.63648 -13.54302 -13.21313 -13.18442 -12.83684 -12.55510 -12.35702 -12.03043 -11.85256 -11.62214 -11.03686 -10.94355 -10.87174 -10.55175 -10.49824 -10.31718 -10.25106 -9.99013 -9.87636 -9.72836 -8.97310 -8.62553 -8.28237 -7.03231 -5.82643 -3.12181 0.45981 1.29644 2.13065 2.52157 2.98343 3.30509 3.38739 3.44115 3.46766 4.10227 4.17799 4.51385 4.52738 4.57845 4.75064 4.76912 4.98017 5.01540 5.20709 5.24181 5.26599 5.32936 5.46892 5.53955 5.58337 5.62429 5.65878 5.82224 5.89095 5.92916 6.06168 6.15311 6.29675 6.32163 6.44303 6.54284 6.60665 6.82114 6.97249 7.35816 7.63673 7.63939 8.05490 8.35463 9.46920 10.04046 10.38425 11.39866 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.003259 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.578767 B = 8588.598742 C = 9291.531781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.490 5.490 3 C 0.169 3.831 4 C -0.225 4.225 5 C 0.575 3.425 6 O -0.537 6.537 7 N -0.597 5.597 8 C 0.107 3.893 9 C -0.150 4.150 10 C 0.179 3.821 11 N -0.724 5.724 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.291 1.291 20 C -0.139 4.139 21 C 0.115 3.885 22 C 0.015 3.985 23 C -0.239 4.239 24 C 0.514 3.486 25 O -0.549 6.549 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 -5.082 -14.334 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.199 5.199 3 C 0.038 3.962 4 C -0.234 4.234 5 C 0.361 3.639 6 O -0.414 6.414 7 N -0.330 5.330 8 C -0.016 4.016 9 C -0.191 4.191 10 C 0.068 3.932 11 N -0.364 5.364 12 C -0.372 4.372 13 H 0.089 0.911 14 C -0.209 4.209 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.178 4.178 21 C -0.007 4.007 22 C -0.007 4.007 23 C -0.261 4.261 24 C 0.316 3.684 25 O -0.432 6.432 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.186 0.814 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.656 -5.511 -14.678 21.462 hybrid contribution 0.186 0.142 1.130 1.154 sum -14.470 -5.369 -13.549 20.537 Atomic orbital electron populations 1.22312 0.76673 1.06679 1.03611 1.45075 1.09709 1.06690 1.58437 1.22004 0.92382 0.90014 0.91800 1.19409 0.92264 0.95114 1.16600 1.17775 0.79888 0.82983 0.83219 1.90803 1.46617 1.71124 1.32902 1.48204 1.57991 1.17994 1.08798 1.21973 0.97098 0.99022 0.83485 1.22753 0.97402 1.01679 0.97283 1.20169 0.92429 0.92907 0.87653 1.42442 1.04515 1.86667 1.02822 1.19262 0.92501 1.41606 0.83833 0.91121 1.24754 0.95269 1.02774 0.98065 1.69671 0.99079 1.57001 1.32175 0.86146 0.77517 0.77399 0.85269 1.20561 1.21866 1.21853 1.22204 0.97852 1.02663 0.95085 1.21679 0.95925 0.82263 1.00831 1.21356 1.01038 0.90167 0.88140 1.22010 0.92247 1.00088 1.11771 1.17251 0.89512 0.82612 0.78983 1.90930 1.69446 1.29940 1.52869 0.87548 0.89976 0.89750 0.81438 0.91398 0.90595 0.92070 0.90644 0.93409 0.78233 0.93501 0.91720 0.90441 0.89183 0.91304 0.84096 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.27 10.55 59.85 0.63 0.90 16 2 N -0.49 -4.28 2.95 -126.73 -0.37 -4.66 16 3 C 0.17 1.34 9.62 -16.43 -0.16 1.18 16 4 C -0.23 -2.33 3.81 -104.95 -0.40 -2.73 16 5 C 0.58 7.30 7.10 -12.51 -0.09 7.21 16 6 O -0.54 -8.63 16.52 5.27 0.09 -8.55 16 7 N -0.60 -7.27 2.97 -173.75 -0.52 -7.78 16 8 C 0.11 1.23 6.25 -3.48 -0.02 1.21 16 9 C -0.15 -2.33 5.68 -26.38 -0.15 -2.48 16 10 C 0.18 3.18 2.73 -67.89 -0.19 3.00 16 11 N -0.72 -17.10 5.12 -53.39 -0.27 -17.37 16 12 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 15 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 16 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 21 C 0.12 1.46 6.44 -3.71 -0.02 1.43 16 22 C 0.01 0.15 9.86 -39.11 -0.39 -0.23 16 23 C -0.24 -2.53 9.97 -39.44 -0.39 -2.93 16 24 C 0.51 6.07 7.40 -15.41 -0.11 5.95 16 25 O -0.55 -8.20 16.33 4.95 0.08 -8.12 16 26 H 0.11 0.76 6.83 -51.93 -0.35 0.40 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.17 0.83 8.05 -52.48 -0.42 0.40 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.78 6.13 -51.93 -0.32 0.46 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -34.16 349.46 -7.68 -41.84 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.97 Total: 6.10 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.68 Total: 3.31 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.44 Total: -56.52 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.17 Total: -16.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.16 -7.68 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996761349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.481 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds