Wall clock time and date at job start Fri Apr 10 2020 17:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35491 * 117.00040 * 2 1 4 4 C 1.39172 * 119.52630 * 180.02562 * 3 2 1 5 5 C 1.37956 * 119.26299 * 179.97438 * 4 3 2 6 6 C 1.40278 * 118.35891 * 359.97438 * 5 4 3 7 7 C 1.47619 * 120.49693 * 180.02562 * 6 5 4 8 8 O 1.21570 * 120.00219 * 325.03338 * 7 6 5 9 9 N 1.34779 * 119.99562 * 145.03235 * 7 6 5 10 10 C 1.46921 * 120.62813 * 174.42141 * 9 7 6 11 11 C 1.53198 * 108.89505 * 126.46099 * 10 9 7 12 12 C 1.53040 * 109.30981 * 54.56302 * 11 10 9 13 13 N 1.46500 * 109.45995 * 178.63014 * 12 11 10 14 14 C 1.36938 * 120.00019 * 205.00232 * 13 12 11 15 15 H 1.07997 * 119.99672 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99645 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00464 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99632 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47173 * 60.00264 * 18 16 14 20 20 H 1.48499 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47212 * 300.00157 * 18 16 14 22 22 C 1.53039 * 109.53825 * 298.63890 * 12 11 10 23 23 C 1.46962 * 120.65822 * 354.23985 * 9 7 6 24 24 C 1.39520 * 119.00445 * 0.27707 * 6 5 4 25 25 N 1.31672 * 120.62586 * 359.43225 * 24 6 5 26 26 H 1.09000 * 109.46871 * 299.99578 * 1 2 3 27 27 H 1.08994 * 109.47625 * 59.99545 * 1 2 3 28 28 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.36536 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.81657 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.58825 * 6.60446 * 10 9 7 32 32 H 1.08996 * 109.58995 * 246.31968 * 10 9 7 33 33 H 1.08997 * 109.49929 * 174.51535 * 11 10 9 34 34 H 1.09000 * 109.49611 * 294.58043 * 11 10 9 35 35 H 1.09000 * 109.45629 * 58.65569 * 12 11 10 36 36 H 0.97001 * 119.99982 * 24.99486 * 13 12 11 37 37 H 0.97001 * 120.00199 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.49538 * 181.32067 * 22 12 11 39 39 H 1.08998 * 109.49504 * 301.41005 * 22 12 11 40 40 H 1.08990 * 109.46897 * 113.74951 * 23 9 7 41 41 H 1.09003 * 109.70985 * 353.46081 * 23 9 7 42 42 H 1.08003 * 119.68928 * 179.72496 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6511 -0.0016 7 6 3.8670 4.9933 -0.0028 8 8 4.9047 5.1873 0.6001 9 7 3.2775 6.0036 -0.6722 10 6 3.8085 7.3707 -0.5837 11 6 4.0530 7.9006 -2.0001 12 6 2.7637 7.7790 -2.8156 13 7 2.9847 8.3150 -4.1609 14 6 1.9278 8.7900 -4.8908 15 1 0.9316 8.7698 -4.4745 16 6 2.1374 9.2984 -6.1654 17 7 3.3518 9.3245 -6.6721 18 14 0.6956 9.9457 -7.1613 19 1 0.0517 11.0660 -6.4295 20 1 1.1815 10.4298 -8.4784 21 1 -0.2923 8.8564 -7.3675 22 6 2.3574 6.3068 -2.9140 23 6 2.0937 5.7588 -1.5080 24 6 1.8647 3.5077 0.0043 25 7 1.3139 2.3117 -0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 4.0210 0.3617 -0.0005 30 1 5.1324 2.5775 -0.0019 31 1 4.7471 7.3629 -0.0294 32 1 3.0883 8.0102 -0.0736 33 1 4.3545 8.9469 -1.9501 34 1 4.8413 7.3172 -2.4758 35 1 1.9698 8.3428 -2.3258 36 1 3.8796 8.3337 -4.5347 37 1 3.4981 9.6795 -7.5629 38 1 1.4520 6.2187 -3.5145 39 1 3.1612 5.7380 -3.3813 40 1 1.2317 6.2654 -1.0741 41 1 1.8983 4.6879 -1.5639 42 1 1.2361 4.3860 0.0085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996788446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:46 Heat of formation + Delta-G solvation = -11.293183 kcal Electronic energy + Delta-G solvation = -24799.412739 eV Core-core repulsion = 21166.689107 eV Total energy + Delta-G solvation = -3632.723632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23192 -39.90824 -38.06645 -37.32560 -34.59298 -32.85239 -32.42368 -31.50389 -30.36534 -29.23382 -27.67366 -25.42387 -24.14969 -23.75012 -22.88761 -22.36592 -20.55703 -19.30868 -18.69916 -17.87603 -17.16581 -16.96345 -16.38350 -15.97648 -15.20774 -15.01196 -14.79037 -14.56122 -14.33301 -13.82119 -13.72746 -13.57872 -13.51136 -13.37692 -13.06824 -12.89870 -12.34490 -12.17358 -11.94767 -11.64666 -11.43068 -11.00008 -10.90130 -10.84279 -10.54451 -10.29067 -10.26948 -10.24319 -9.86697 -9.73111 -9.69176 -8.95703 -8.81536 -8.54252 -7.01155 -5.80340 -3.09884 0.53356 0.88895 2.66080 2.71329 2.97588 3.40897 3.45496 3.46689 3.51239 3.89576 4.34913 4.52313 4.55036 4.72258 4.78021 4.97279 5.00318 5.00898 5.25064 5.29259 5.29433 5.31580 5.33642 5.48319 5.50653 5.57879 5.68113 5.77806 5.90486 5.95069 5.99733 6.18336 6.33005 6.35276 6.46929 6.57375 6.82464 6.84651 6.99849 7.39351 7.42706 7.64866 8.11139 8.37808 9.48992 10.06292 10.40837 11.42095 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.003261 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.780846 B = 8585.079900 C = 9716.381451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.337 3.663 4 C -0.196 4.196 5 C 0.013 3.987 6 C -0.219 4.219 7 C 0.568 3.432 8 O -0.543 6.543 9 N -0.599 5.599 10 C 0.117 3.883 11 C -0.139 4.139 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.151 4.151 23 C 0.094 3.906 24 C 0.174 3.826 25 N -0.543 5.543 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -15.832 15.540 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.158 3.842 4 C -0.217 4.217 5 C -0.013 4.013 6 C -0.224 4.224 7 C 0.356 3.644 8 O -0.421 6.421 9 N -0.331 5.331 10 C -0.006 4.006 11 C -0.178 4.178 12 C 0.069 3.931 13 N -0.364 5.364 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.192 4.192 23 C -0.029 4.029 24 C 0.017 3.983 25 N -0.266 5.266 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.753 -15.999 15.754 22.764 hybrid contribution 0.021 0.498 -0.949 1.072 sum -3.732 -15.501 14.805 21.757 Atomic orbital electron populations 1.22926 0.76782 1.03161 1.02842 1.86209 1.23330 1.24494 1.87092 1.20087 0.89505 0.84764 0.89822 1.21017 0.91856 0.99559 1.09253 1.21463 1.01019 0.89717 0.89102 1.20781 0.95228 0.94946 1.11483 1.17915 0.83811 0.83607 0.79081 1.90766 1.22893 1.83435 1.45055 1.48062 1.30279 1.08466 1.46314 1.21661 1.00144 0.80662 0.98086 1.22209 0.99696 1.01609 0.94302 1.20169 0.94350 0.91292 0.87330 1.42427 1.08379 1.73084 1.12515 1.19185 0.88706 1.33055 0.96353 0.91196 1.24751 0.96469 1.01971 0.97648 1.69650 1.19313 1.51784 1.17279 0.86282 0.81679 0.78758 0.79536 1.21239 1.21707 1.21265 1.22684 1.02701 1.00168 0.93626 1.22316 0.86925 1.01261 0.92393 1.22936 0.91705 0.94115 0.89537 1.67373 1.40415 0.98554 1.20292 0.92067 0.91888 0.88477 0.83381 0.83102 0.89172 0.91266 0.90407 0.91766 0.93328 0.78243 0.93411 0.90501 0.92153 0.90978 0.89889 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.37 101.05 1.05 1.32 16 2 O -0.31 -3.06 10.46 -18.17 -0.19 -3.25 16 3 C 0.34 3.70 7.49 -16.96 -0.13 3.57 16 4 C -0.20 -1.93 10.02 -39.34 -0.39 -2.32 16 5 C 0.01 0.14 9.74 -38.92 -0.38 -0.24 16 6 C -0.22 -2.65 5.31 -104.82 -0.56 -3.20 16 7 C 0.57 8.10 7.39 -12.43 -0.09 8.00 16 8 O -0.54 -9.27 16.29 5.30 0.09 -9.18 16 9 N -0.60 -8.09 2.98 -173.94 -0.52 -8.61 16 10 C 0.12 1.60 6.44 -3.71 -0.02 1.57 16 11 C -0.14 -2.23 5.55 -26.61 -0.15 -2.37 16 12 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 13 N -0.72 -17.47 5.12 -53.39 -0.27 -17.74 16 14 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 23 C 0.09 1.17 4.78 -3.69 -0.02 1.16 16 24 C 0.17 1.91 8.54 -17.14 -0.15 1.77 16 25 N -0.54 -6.17 9.18 -12.96 -0.12 -6.29 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.15 1.46 8.05 -52.48 -0.42 1.04 16 31 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 36 H 0.38 10.01 7.80 -40.82 -0.32 9.70 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.08 0.95 4.46 -51.93 -0.23 0.72 16 42 H 0.17 1.59 6.03 -52.48 -0.32 1.27 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -32.26 346.13 -7.35 -39.61 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.84 Total: 7.70 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.42 Total: 2.69 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.19 Total: -59.68 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.10 Total: -12.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.26 -7.35 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996788446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.314 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds