Wall clock time and date at job start Fri Apr 10 2020 17:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35491 * 117.00040 * 2 1 4 4 C 1.39172 * 119.52630 * 180.02562 * 3 2 1 5 5 C 1.37956 * 119.26299 * 179.97438 * 4 3 2 6 6 C 1.40278 * 118.35891 * 359.97438 * 5 4 3 7 7 C 1.47619 * 120.49693 * 180.02562 * 6 5 4 8 8 O 1.21570 * 120.00219 * 325.03338 * 7 6 5 9 9 N 1.34779 * 119.99562 * 145.03235 * 7 6 5 10 10 C 1.46921 * 120.62813 * 174.42141 * 9 7 6 11 11 C 1.53198 * 108.89505 * 126.46099 * 10 9 7 12 12 C 1.53040 * 109.30981 * 54.56302 * 11 10 9 13 13 N 1.46500 * 109.45995 * 178.63014 * 12 11 10 14 14 C 1.36938 * 120.00019 * 205.00232 * 13 12 11 15 15 H 1.07997 * 119.99672 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99645 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00464 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99632 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47173 * 60.00264 * 18 16 14 20 20 H 1.48499 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47212 * 300.00157 * 18 16 14 22 22 C 1.53039 * 109.53825 * 298.63890 * 12 11 10 23 23 C 1.46962 * 120.65822 * 354.23985 * 9 7 6 24 24 C 1.39520 * 119.00445 * 0.27707 * 6 5 4 25 25 N 1.31672 * 120.62586 * 359.43225 * 24 6 5 26 26 H 1.09000 * 109.46871 * 299.99578 * 1 2 3 27 27 H 1.08994 * 109.47625 * 59.99545 * 1 2 3 28 28 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.36536 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.81657 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.58825 * 6.60446 * 10 9 7 32 32 H 1.08996 * 109.58995 * 246.31968 * 10 9 7 33 33 H 1.08997 * 109.49929 * 174.51535 * 11 10 9 34 34 H 1.09000 * 109.49611 * 294.58043 * 11 10 9 35 35 H 1.09000 * 109.45629 * 58.65569 * 12 11 10 36 36 H 0.97001 * 119.99982 * 24.99486 * 13 12 11 37 37 H 0.97001 * 120.00199 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.49538 * 181.32067 * 22 12 11 39 39 H 1.08998 * 109.49504 * 301.41005 * 22 12 11 40 40 H 1.08990 * 109.46897 * 113.74951 * 23 9 7 41 41 H 1.09003 * 109.70985 * 353.46081 * 23 9 7 42 42 H 1.08003 * 119.68928 * 179.72496 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6511 -0.0016 7 6 3.8670 4.9933 -0.0028 8 8 4.9047 5.1873 0.6001 9 7 3.2775 6.0036 -0.6722 10 6 3.8085 7.3707 -0.5837 11 6 4.0530 7.9006 -2.0001 12 6 2.7637 7.7790 -2.8156 13 7 2.9847 8.3150 -4.1609 14 6 1.9278 8.7900 -4.8908 15 1 0.9316 8.7698 -4.4745 16 6 2.1374 9.2984 -6.1654 17 7 3.3518 9.3245 -6.6721 18 14 0.6956 9.9457 -7.1613 19 1 0.0517 11.0660 -6.4295 20 1 1.1815 10.4298 -8.4784 21 1 -0.2923 8.8564 -7.3675 22 6 2.3574 6.3068 -2.9140 23 6 2.0937 5.7588 -1.5080 24 6 1.8647 3.5077 0.0043 25 7 1.3139 2.3117 -0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 4.0210 0.3617 -0.0005 30 1 5.1324 2.5775 -0.0019 31 1 4.7471 7.3629 -0.0294 32 1 3.0883 8.0102 -0.0736 33 1 4.3545 8.9469 -1.9501 34 1 4.8413 7.3172 -2.4758 35 1 1.9698 8.3428 -2.3258 36 1 3.8796 8.3337 -4.5347 37 1 3.4981 9.6795 -7.5629 38 1 1.4520 6.2187 -3.5145 39 1 3.1612 5.7380 -3.3813 40 1 1.2317 6.2654 -1.0741 41 1 1.8983 4.6879 -1.5639 42 1 1.2361 4.3860 0.0085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996788446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:46 Heat of formation + Delta-G solvation = -34.312622 kcal Electronic energy + Delta-G solvation = -24800.410937 eV Core-core repulsion = 21166.689107 eV Total energy + Delta-G solvation = -3633.721830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12793 -40.91549 -39.00171 -38.52793 -36.19941 -33.99201 -33.68176 -32.76749 -31.46938 -30.84626 -28.35620 -26.82405 -25.41543 -24.76514 -24.13304 -23.61160 -21.83965 -20.51393 -19.48343 -19.09723 -18.81567 -17.93818 -17.22165 -17.01810 -16.69347 -16.26421 -15.80749 -15.51992 -15.37657 -15.35690 -15.17403 -14.86875 -14.48588 -14.39302 -14.30848 -13.92612 -13.59040 -13.28383 -13.09267 -12.79226 -12.77212 -12.62696 -12.27534 -12.21700 -12.10830 -11.99452 -11.70032 -11.31464 -11.27653 -11.09528 -10.85655 -10.68776 -9.79540 -9.56753 -8.99155 -7.91934 -5.20719 -0.33460 0.08408 1.49284 1.51763 1.57639 1.60899 1.89878 2.03589 2.57842 2.64273 3.11674 3.36885 3.41856 3.70004 3.82557 3.87511 3.95342 4.00742 4.07840 4.16232 4.34201 4.39738 4.44647 4.45434 4.56308 4.59948 4.69327 4.74113 4.80243 4.84900 4.85479 4.93701 5.03804 5.08859 5.21582 5.31472 5.48563 5.54654 5.60671 6.07895 6.29014 6.31176 6.59887 7.01473 7.35637 8.11830 8.34283 9.31640 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.003261 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.780846 B = 8585.079900 C = 9716.381451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.328 3.672 4 C -0.192 4.192 5 C 0.009 3.991 6 C -0.235 4.235 7 C 0.570 3.430 8 O -0.576 6.576 9 N -0.599 5.599 10 C 0.123 3.877 11 C -0.129 4.129 12 C 0.173 3.827 13 N -0.739 5.739 14 C -0.236 4.236 15 H 0.081 0.919 16 C -0.079 4.079 17 N -0.973 5.973 18 Si 0.971 3.029 19 H -0.277 1.277 20 H -0.301 1.301 21 H -0.277 1.277 22 C -0.141 4.141 23 C 0.104 3.896 24 C 0.177 3.823 25 N -0.551 5.551 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -16.985 16.901 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.150 3.850 4 C -0.212 4.212 5 C -0.017 4.017 6 C -0.240 4.240 7 C 0.359 3.641 8 O -0.457 6.457 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.168 4.168 12 C 0.065 3.935 13 N -0.378 5.378 14 C -0.367 4.367 15 H 0.099 0.901 16 C -0.270 4.270 17 N -0.624 5.624 18 Si 0.800 3.200 19 H -0.203 1.203 20 H -0.227 1.227 21 H -0.203 1.203 22 C -0.182 4.182 23 C -0.018 4.018 24 C 0.020 3.980 25 N -0.275 5.275 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.189 0.811 30 H 0.175 0.825 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.662 -17.184 17.162 24.938 hybrid contribution 0.590 0.762 -1.297 1.616 sum -5.073 -16.421 15.865 23.390 Atomic orbital electron populations 1.23145 0.75396 1.04956 1.02636 1.86212 1.24739 1.24014 1.86780 1.20376 0.90095 0.85041 0.89490 1.21242 0.91750 1.00040 1.08183 1.21621 1.01438 0.89801 0.88818 1.20699 0.95924 0.94066 1.13343 1.18200 0.83246 0.84253 0.78400 1.90747 1.24404 1.84000 1.46564 1.48103 1.30425 1.08315 1.46177 1.21601 1.00933 0.81163 0.96211 1.22066 0.97875 1.01422 0.95396 1.20436 0.95744 0.92300 0.85030 1.42675 1.07155 1.73542 1.14407 1.19620 0.89688 1.31061 0.96360 0.90103 1.25555 0.98792 1.03533 0.99170 1.69820 1.21423 1.53854 1.17310 0.85246 0.78819 0.78407 0.77515 1.20290 1.22722 1.20305 1.22464 1.01385 0.98269 0.96071 1.22325 0.87295 1.02406 0.89784 1.23139 0.91348 0.94627 0.88907 1.67414 1.40620 0.98745 1.20708 0.92040 0.92265 0.85792 0.81112 0.82502 0.89491 0.88824 0.90651 0.93452 0.92641 0.79933 0.94217 0.91431 0.94136 0.88061 0.88329 0.79429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.37 113.37 1.18 1.59 16 2 O -0.31 -5.58 10.46 -87.92 -0.92 -6.50 16 3 C 0.33 6.56 7.49 84.83 0.64 7.19 16 4 C -0.19 -3.40 10.02 22.43 0.22 -3.17 16 5 C 0.01 0.17 9.74 22.70 0.22 0.40 16 6 C -0.23 -5.30 5.31 -20.00 -0.11 -5.40 16 7 C 0.57 15.50 7.39 86.72 0.64 16.14 16 8 O -0.58 -19.32 16.29 -3.94 -0.06 -19.39 16 9 N -0.60 -15.08 2.98 -822.50 -2.45 -17.53 16 10 C 0.12 3.17 6.44 86.37 0.56 3.73 16 11 C -0.13 -4.06 5.55 30.67 0.17 -3.89 16 12 C 0.17 6.27 2.73 45.02 0.12 6.39 16 13 N -0.74 -35.95 5.12 -322.82 -1.65 -37.60 16 14 C -0.24 -12.56 9.93 84.03 0.83 -11.73 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 17 N -0.97 -59.30 13.06 21.65 0.28 -59.01 16 18 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.14 -4.46 5.66 30.67 0.17 -4.29 16 23 C 0.10 2.35 4.78 86.35 0.41 2.76 16 24 C 0.18 3.49 8.54 85.03 0.73 4.21 16 25 N -0.55 -11.36 9.18 -307.82 -2.82 -14.19 16 26 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.16 2.89 8.05 -2.91 -0.02 2.86 16 31 H 0.09 2.36 7.00 -2.39 -0.02 2.34 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.95 8.08 -2.39 -0.02 1.94 16 36 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 37 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.78 8.06 -2.39 -0.02 1.76 16 41 H 0.10 1.99 4.46 -2.39 -0.01 1.98 16 42 H 0.19 2.90 6.03 -2.91 -0.02 2.88 16 Total: -1.00 -69.83 346.13 0.97 -68.86 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.25 Total: 9.97 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -6.65 Total: -128.33 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.98 Total: -25.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.83 0.97 -68.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996788446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.547 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds