Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35581 * 118.80541 * 2 1 4 4 C 1.34859 * 121.79556 * 180.02562 * 3 2 1 5 5 C 1.41671 * 119.34389 * 359.97161 * 4 3 2 6 6 O 1.22087 * 121.06935 * 179.97438 * 5 4 3 7 7 C 1.47098 * 117.86171 * 0.02562 * 5 4 3 8 8 C 1.47282 * 120.88174 * 179.97438 * 7 5 4 9 9 O 1.21618 * 120.00167 * 312.52340 * 8 7 5 10 10 N 1.34782 * 119.99863 * 132.52555 * 8 7 5 11 11 C 1.46923 * 120.62998 * 174.21354 * 10 8 7 12 12 C 1.53196 * 108.77710 * 126.66380 * 11 10 8 13 13 C 1.53044 * 109.30730 * 54.63717 * 12 11 10 14 14 N 1.46498 * 109.45857 * 178.61595 * 13 12 11 15 15 C 1.36933 * 120.00150 * 275.07047 * 14 13 12 16 16 H 1.08004 * 119.99919 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00544 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99621 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00360 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47146 * 89.99676 * 19 17 15 21 21 H 1.48504 * 109.47085 * 209.99595 * 19 17 15 22 22 H 1.48496 * 109.46830 * 329.99423 * 19 17 15 23 23 C 1.53040 * 109.53765 * 298.63189 * 13 12 11 24 24 C 1.46928 * 120.62902 * 354.49393 * 10 8 7 25 25 C 1.34347 * 118.79915 * 180.27645 * 2 1 3 26 26 H 1.09004 * 109.46832 * 89.99889 * 1 2 3 27 27 H 1.09002 * 109.47482 * 210.00355 * 1 2 3 28 28 H 1.09002 * 109.47376 * 330.00253 * 1 2 3 29 29 H 1.07998 * 119.09687 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.32792 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.58996 * 246.45568 * 11 10 8 32 32 H 1.09005 * 109.58615 * 6.87780 * 11 10 8 33 33 H 1.09002 * 109.49698 * 294.68954 * 12 11 10 34 34 H 1.08998 * 109.49991 * 174.58515 * 12 11 10 35 35 H 1.08993 * 109.46343 * 58.65660 * 13 12 11 36 36 H 0.97008 * 120.00186 * 95.06586 * 14 13 12 37 37 H 0.96997 * 119.99907 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.50125 * 301.41820 * 23 13 12 39 39 H 1.08998 * 109.52450 * 181.33612 * 23 13 12 40 40 H 1.08995 * 109.58442 * 353.12333 * 24 10 8 41 41 H 1.09004 * 109.58528 * 113.40647 * 24 10 8 42 42 H 1.07994 * 119.82144 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4650 1.2584 -0.0005 5 6 4.2228 0.0614 -0.0005 6 8 5.4434 0.0883 -0.0014 7 6 3.4916 -1.2151 -0.0004 8 6 4.2127 -2.4993 -0.0009 9 8 5.1309 -2.6809 -0.7775 10 7 3.8550 -3.4733 0.8593 11 6 4.4782 -4.8019 0.7870 12 6 5.0312 -5.1631 2.1692 13 6 3.9124 -5.0493 3.2073 14 7 4.4294 -5.4259 4.5253 15 6 4.4631 -6.7435 4.8966 16 1 4.1081 -7.5050 4.2180 17 6 4.9524 -7.1004 6.1456 18 7 5.3846 -6.1723 6.9728 19 14 4.9977 -8.8978 6.6524 20 1 6.2965 -9.4935 6.2482 21 1 4.8429 -9.0007 8.1257 22 1 3.8895 -9.6279 5.9861 23 6 3.4015 -3.6074 3.2532 24 6 2.8301 -3.2285 1.8832 25 6 2.1122 -1.1773 -0.0057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.5444 2.1029 0.0004 30 1 3.9610 2.2178 -0.0009 31 1 3.7333 -5.5391 0.4873 32 1 5.2913 -4.7851 0.0611 33 1 5.8388 -4.4785 2.4282 34 1 5.4105 -6.1848 2.1537 35 1 3.0944 -5.7158 2.9343 36 1 4.7480 -4.7419 5.1350 37 1 5.7269 -6.4217 7.8455 38 1 4.2246 -2.9374 3.5020 39 1 2.6211 -3.5213 4.0092 40 1 2.5558 -2.1737 1.8806 41 1 1.9499 -3.8356 1.6715 42 1 1.5499 -2.0993 -0.0105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996794881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = -10.803675 kcal Electronic energy + Delta-G solvation = -25150.341146 eV Core-core repulsion = 21517.638740 eV Total energy + Delta-G solvation = -3632.702406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36050 -39.61355 -38.04537 -37.04187 -34.47246 -32.92772 -32.59621 -31.70123 -30.53904 -29.16879 -27.34597 -25.51122 -24.37549 -23.35782 -22.58044 -22.51620 -20.50241 -19.19745 -17.97030 -17.66838 -17.14414 -16.93589 -16.28953 -15.88777 -15.52079 -14.80006 -14.76782 -14.65446 -13.99952 -13.89260 -13.77086 -13.56219 -13.49540 -13.40494 -12.99632 -12.88730 -12.61913 -12.40243 -12.28874 -11.95340 -11.44692 -10.90907 -10.87336 -10.78355 -10.39265 -10.23473 -10.03849 -9.94423 -9.73548 -9.63705 -9.31370 -8.88554 -8.42676 -8.14909 -6.95744 -5.75986 -3.05119 0.73437 1.06756 2.04471 2.84604 3.17580 3.43869 3.48798 3.50465 3.64184 3.89379 4.09386 4.34804 4.43864 4.50223 4.58745 4.78145 4.81701 4.99180 5.00922 5.24617 5.31473 5.39721 5.45665 5.50814 5.61477 5.66601 5.82589 5.91958 6.02034 6.08072 6.25276 6.25747 6.34401 6.45964 6.50117 6.61298 6.68631 6.98135 7.10814 7.60293 7.69788 8.00528 8.41167 8.42349 9.53383 10.11164 10.45793 11.46648 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.003206 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.470602 B = 8730.326574 C = 9061.075109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.477 5.477 3 C 0.128 3.872 4 C -0.268 4.268 5 C 0.408 3.592 6 O -0.491 6.491 7 C -0.289 4.289 8 C 0.580 3.420 9 O -0.526 6.526 10 N -0.607 5.607 11 C 0.115 3.885 12 C -0.151 4.151 13 C 0.180 3.820 14 N -0.725 5.725 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.140 4.140 24 C 0.108 3.892 25 C 0.165 3.835 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.271 15.393 -15.150 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.164 5.164 3 C 0.004 3.996 4 C -0.292 4.292 5 C 0.294 3.706 6 O -0.372 6.372 7 C -0.299 4.299 8 C 0.368 3.632 9 O -0.401 6.401 10 N -0.341 5.341 11 C -0.008 4.008 12 C -0.192 4.192 13 C 0.070 3.930 14 N -0.365 5.365 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.179 4.179 24 C -0.015 4.015 25 C 0.035 3.965 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.182 0.818 30 H 0.171 0.829 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.349 15.125 -15.518 27.145 hybrid contribution 0.023 -0.746 0.681 1.010 sum -16.326 14.379 -14.837 26.333 Atomic orbital electron populations 1.22487 0.76095 1.05747 1.04302 1.42650 1.08587 1.04439 1.60730 1.21683 0.94290 0.88357 0.95304 1.22438 0.93141 1.01321 1.12323 1.18197 0.89236 0.86987 0.76147 1.90820 1.14513 1.89071 1.42837 1.22446 0.92624 0.97234 1.17631 1.17506 0.82874 0.82197 0.80644 1.90782 1.28781 1.80147 1.40427 1.48093 1.40878 1.12584 1.32520 1.21696 0.97911 0.81694 0.99452 1.22667 1.00685 1.02163 0.93672 1.20155 0.93677 0.92176 0.86981 1.42438 1.75303 1.05917 1.12840 1.19231 1.34951 0.84304 0.98534 0.91168 1.24750 1.01828 0.97438 0.96943 1.69668 1.48197 1.31339 1.08873 0.86204 0.77711 0.84830 0.77521 1.21716 1.21826 1.20782 1.22198 1.01415 0.99108 0.95154 1.21876 0.90444 1.00890 0.88316 1.22180 0.92956 0.89166 0.92199 0.90173 0.88861 0.88879 0.81844 0.82900 0.91813 0.89576 0.92136 0.90713 0.93467 0.78273 0.93513 0.91645 0.90616 0.90528 0.91466 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.01 10.52 59.85 0.63 0.64 16 2 N -0.48 -2.30 2.97 -124.39 -0.37 -2.67 16 3 C 0.13 0.68 10.17 -17.09 -0.17 0.51 16 4 C -0.27 -2.62 10.01 -39.47 -0.40 -3.01 16 5 C 0.41 6.30 6.95 -34.68 -0.24 6.06 16 6 O -0.49 -10.22 17.27 1.89 0.03 -10.18 16 7 C -0.29 -3.92 5.02 -102.72 -0.52 -4.43 16 8 C 0.58 9.91 7.08 -12.58 -0.09 9.82 16 9 O -0.53 -11.31 16.15 2.31 0.04 -11.27 16 10 N -0.61 -9.15 2.97 -174.08 -0.52 -9.67 16 11 C 0.11 1.83 6.44 -3.71 -0.02 1.81 16 12 C -0.15 -2.83 5.66 -26.61 -0.15 -2.98 16 13 C 0.18 3.49 2.73 -67.89 -0.19 3.31 16 14 N -0.72 -18.06 5.12 -53.39 -0.27 -18.34 16 15 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 24 C 0.11 1.31 5.23 -3.71 -0.02 1.29 16 25 C 0.16 1.28 7.79 -16.54 -0.13 1.15 16 26 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.09 -0.06 7.96 -51.93 -0.41 -0.48 16 28 H 0.09 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.16 0.15 7.97 -52.49 -0.42 -0.27 16 30 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.78 5.12 -51.93 -0.27 0.52 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.17 0.85 7.20 -52.49 -0.38 0.48 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -40.43 347.29 -7.76 -48.19 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.92 Total: 4.35 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.69 Total: 4.60 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.44 Total: -58.25 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.07 Total: -21.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -40.43 -7.76 -48.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996794881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -40.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds