Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35749 * 116.99915 * 2 1 4 4 C 1.39218 * 120.81307 * 0.02562 * 3 2 1 5 5 C 1.38309 * 119.28624 * 180.02562 * 4 3 2 6 6 N 1.31619 * 120.97377 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.77954 * 0.02562 * 6 5 4 8 8 C 1.48180 * 119.70024 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00123 * 170.77190 * 8 7 6 10 10 N 1.34777 * 119.99914 * 350.77506 * 8 7 6 11 11 C 1.46922 * 120.63380 * 172.27133 * 10 8 7 12 12 C 1.53195 * 108.89483 * 126.29933 * 11 10 8 13 13 C 1.53350 * 109.14453 * 54.58011 * 12 11 10 14 14 N 1.46498 * 109.41597 * 178.67726 * 13 12 11 15 15 C 1.36938 * 120.00045 * 275.12812 * 14 13 12 16 16 H 1.07993 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.38819 * 120.00127 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47086 * 59.99560 * 19 17 15 21 21 H 1.48496 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46915 * 299.99526 * 19 17 15 23 23 C 1.53045 * 109.61058 * 298.71356 * 13 12 11 24 24 C 1.46932 * 120.62679 * 352.25584 * 10 8 7 25 25 C 1.39107 * 120.60274 * 0.25539 * 7 6 5 26 26 H 1.09001 * 109.46790 * 299.99938 * 1 2 3 27 27 H 1.09001 * 109.47141 * 59.99930 * 1 2 3 28 28 H 1.08994 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.35581 * 359.97196 * 4 3 2 30 30 H 1.07994 * 119.51562 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.59528 * 246.16190 * 11 10 8 32 32 H 1.09006 * 109.58353 * 6.44251 * 11 10 8 33 33 H 1.08992 * 109.49915 * 174.65986 * 12 11 10 34 34 H 1.09000 * 109.49501 * 294.76244 * 12 11 10 35 35 H 1.08991 * 109.42164 * 58.75239 * 13 12 11 36 36 H 0.97004 * 120.00553 * 95.13056 * 14 13 12 37 37 H 0.97005 * 120.00052 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.49350 * 301.42685 * 23 13 12 39 39 H 1.08996 * 109.52649 * 181.34654 * 23 13 12 40 40 H 1.08993 * 109.58709 * 353.41780 * 24 10 8 41 41 H 1.09003 * 109.58638 * 113.70041 * 24 10 8 42 42 H 1.08002 * 120.50669 * 179.74440 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3878 0.0005 5 6 1.9642 3.6029 0.0000 6 7 3.2792 3.6591 -0.0005 7 6 4.0262 2.5612 -0.0011 8 6 5.5034 2.6781 -0.0022 9 8 6.1912 1.6906 0.1661 10 7 6.0840 3.8798 -0.1898 11 6 7.5349 4.0439 -0.0267 12 6 8.1082 4.6801 -1.2969 13 6 7.3545 5.9828 -1.5911 14 7 7.9191 6.6125 -2.7873 15 6 9.0180 7.4226 -2.6807 16 1 9.4682 7.5976 -1.7148 17 6 9.5527 8.0198 -3.8141 18 7 9.0037 7.8070 -4.9912 19 14 11.0522 9.1243 -3.6687 20 1 12.1853 8.3487 -3.1033 21 1 11.4237 9.6340 -5.0131 22 1 10.7398 10.2678 -2.7742 23 6 5.8735 5.6774 -1.8265 24 6 5.2781 5.0507 -0.5618 25 6 3.4346 1.3022 -0.0064 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2244 2.3532 0.0005 30 1 1.3926 4.5192 0.0008 31 1 7.7360 4.6896 0.8281 32 1 7.9969 3.0698 0.1346 33 1 9.1670 4.8934 -1.1510 34 1 7.9870 3.9931 -2.1344 35 1 7.4553 6.6593 -0.7426 36 1 7.5146 6.4558 -3.6549 37 1 9.3775 8.2240 -5.7832 38 1 5.7735 4.9811 -2.6592 39 1 5.3435 6.6011 -2.0590 40 1 4.2513 4.7408 -0.7560 41 1 5.2930 5.7775 0.2504 42 1 4.0435 0.4103 -0.0110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996867848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = -1.561424 kcal Electronic energy + Delta-G solvation = -24719.299376 eV Core-core repulsion = 21086.997745 eV Total energy + Delta-G solvation = -3632.301631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26183 -39.82601 -38.39078 -37.27157 -34.45861 -32.36097 -31.96071 -31.62406 -30.41543 -29.17371 -28.10994 -25.35958 -24.15823 -23.73225 -22.62342 -22.35210 -20.65654 -19.44023 -18.20578 -17.70252 -16.99963 -16.58988 -16.36270 -15.94212 -15.76855 -15.27470 -14.94255 -14.76600 -14.26694 -13.86381 -13.84955 -13.62666 -13.46149 -13.23651 -12.91045 -12.75485 -12.36744 -12.11178 -11.91411 -11.66733 -11.43834 -10.86583 -10.78723 -10.75140 -10.35097 -10.24780 -10.20361 -9.96941 -9.66274 -9.60933 -9.36717 -8.93855 -8.79828 -8.38005 -6.91850 -5.73168 -3.01683 0.35509 0.90124 2.52751 2.65080 3.14515 3.46261 3.50605 3.51546 3.59818 3.91450 4.18896 4.40253 4.58837 4.62107 4.62341 4.73290 4.77031 4.95628 5.24193 5.36419 5.38815 5.46040 5.54034 5.61814 5.62728 5.66474 5.84985 5.85800 6.00116 6.07108 6.31557 6.43955 6.46974 6.59020 6.65063 6.71009 6.76683 7.04160 7.14197 7.39760 7.60407 7.72632 8.19748 8.45534 9.56394 10.15078 10.49852 11.49526 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.002769 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.589629 B =10108.839110 C =10507.171704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.164 3.836 4 C -0.246 4.246 5 C 0.131 3.869 6 N -0.469 5.469 7 C 0.124 3.876 8 C 0.566 3.434 9 O -0.540 6.540 10 N -0.579 5.579 11 C 0.109 3.891 12 C -0.148 4.148 13 C 0.177 3.823 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.140 4.140 24 C 0.075 3.925 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.064 0.936 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 -12.639 12.006 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.111 3.889 4 C -0.267 4.267 5 C -0.026 4.026 6 N -0.184 5.184 7 C -0.013 4.013 8 C 0.352 3.648 9 O -0.417 6.417 10 N -0.310 5.310 11 C -0.013 4.013 12 C -0.189 4.189 13 C 0.067 3.933 14 N -0.365 5.365 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.179 4.179 24 C -0.047 4.047 25 C -0.166 4.166 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.686 -12.461 12.128 26.265 hybrid contribution 0.061 0.001 -0.368 0.373 sum -19.624 -12.460 11.760 26.051 Atomic orbital electron populations 1.23185 0.77475 1.04630 1.01780 1.86106 1.22089 1.25981 1.87693 1.19219 0.92103 0.84875 0.92733 1.22384 1.01794 0.93151 1.09327 1.22810 0.90109 0.97400 0.92322 1.67749 1.06685 1.29623 1.14375 1.21083 0.94550 0.88593 0.97043 1.17781 0.85588 0.83496 0.77949 1.90770 1.63313 1.36487 1.51170 1.48014 1.08757 1.08762 1.65454 1.21800 0.78780 1.01809 0.98926 1.22701 1.01112 0.99438 0.95689 1.20276 0.90054 0.91628 0.91348 1.42443 1.33983 1.55622 1.04430 1.19205 1.04194 1.20034 0.93425 0.91245 1.24744 0.99688 1.01199 0.95431 1.69655 1.42576 1.48272 0.97749 0.86278 0.82936 0.80586 0.76457 1.21303 1.21761 1.21301 1.22235 0.97676 1.00696 0.97259 1.23048 0.98631 0.86476 0.96564 1.21372 0.91962 0.99712 1.03577 0.92179 0.92120 0.87667 0.83885 0.81481 0.91526 0.89694 0.90724 0.92298 0.93492 0.78338 0.93517 0.92281 0.90685 0.83944 0.91797 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.31 -2.67 10.51 -18.96 -0.20 -2.87 16 3 C 0.16 1.58 6.73 -38.85 -0.26 1.32 16 4 C -0.25 -1.81 9.12 -39.19 -0.36 -2.17 16 5 C 0.13 1.08 11.17 -17.62 -0.20 0.88 16 6 N -0.47 -5.37 6.12 -9.87 -0.06 -5.43 16 7 C 0.12 1.64 6.58 -83.04 -0.55 1.09 16 8 C 0.57 9.05 7.65 -12.18 -0.09 8.96 16 9 O -0.54 -9.91 15.79 5.35 0.08 -9.82 16 10 N -0.58 -9.07 2.97 -173.75 -0.52 -9.59 16 11 C 0.11 1.76 6.43 -3.71 -0.02 1.73 16 12 C -0.15 -2.78 5.69 -26.45 -0.15 -2.93 16 13 C 0.18 3.55 2.73 -67.73 -0.19 3.37 16 14 N -0.72 -18.33 5.12 -53.23 -0.27 -18.60 16 15 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 19 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 24 C 0.08 1.08 5.89 -3.71 -0.02 1.06 16 25 C -0.14 -1.73 9.59 -38.89 -0.37 -2.10 16 26 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 27 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.14 0.60 6.45 -52.49 -0.34 0.26 16 30 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.38 10.36 7.80 -40.82 -0.32 10.05 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.14 1.89 4.00 -85.00 -0.34 1.55 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.16 1.90 7.67 -52.49 -0.40 1.49 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -33.73 344.46 -7.59 -41.32 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.91 Total: 7.50 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.61 Total: 2.51 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.13 Total: -61.39 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.11 Total: -12.69 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.73 -7.59 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996867848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.763 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds