Wall clock time and date at job start Fri Apr 10 2020 17:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35749 * 116.99915 * 2 1 4 4 C 1.39218 * 120.81307 * 0.02562 * 3 2 1 5 5 C 1.38309 * 119.28624 * 180.02562 * 4 3 2 6 6 N 1.31619 * 120.97377 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.77954 * 0.02562 * 6 5 4 8 8 C 1.48180 * 119.70024 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00123 * 170.77190 * 8 7 6 10 10 N 1.34777 * 119.99914 * 350.77506 * 8 7 6 11 11 C 1.46922 * 120.63380 * 172.27133 * 10 8 7 12 12 C 1.53195 * 108.89483 * 126.29933 * 11 10 8 13 13 C 1.53350 * 109.14453 * 54.58011 * 12 11 10 14 14 N 1.46498 * 109.41597 * 178.67726 * 13 12 11 15 15 C 1.36938 * 120.00045 * 275.12812 * 14 13 12 16 16 H 1.07993 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.38819 * 120.00127 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47086 * 59.99560 * 19 17 15 21 21 H 1.48496 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46915 * 299.99526 * 19 17 15 23 23 C 1.53045 * 109.61058 * 298.71356 * 13 12 11 24 24 C 1.46932 * 120.62679 * 352.25584 * 10 8 7 25 25 C 1.39107 * 120.60274 * 0.25539 * 7 6 5 26 26 H 1.09001 * 109.46790 * 299.99938 * 1 2 3 27 27 H 1.09001 * 109.47141 * 59.99930 * 1 2 3 28 28 H 1.08994 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.35581 * 359.97196 * 4 3 2 30 30 H 1.07994 * 119.51562 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.59528 * 246.16190 * 11 10 8 32 32 H 1.09006 * 109.58353 * 6.44251 * 11 10 8 33 33 H 1.08992 * 109.49915 * 174.65986 * 12 11 10 34 34 H 1.09000 * 109.49501 * 294.76244 * 12 11 10 35 35 H 1.08991 * 109.42164 * 58.75239 * 13 12 11 36 36 H 0.97004 * 120.00553 * 95.13056 * 14 13 12 37 37 H 0.97005 * 120.00052 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.49350 * 301.42685 * 23 13 12 39 39 H 1.08996 * 109.52649 * 181.34654 * 23 13 12 40 40 H 1.08993 * 109.58709 * 353.41780 * 24 10 8 41 41 H 1.09003 * 109.58638 * 113.70041 * 24 10 8 42 42 H 1.08002 * 120.50669 * 179.74440 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3878 0.0005 5 6 1.9642 3.6029 0.0000 6 7 3.2792 3.6591 -0.0005 7 6 4.0262 2.5612 -0.0011 8 6 5.5034 2.6781 -0.0022 9 8 6.1912 1.6906 0.1661 10 7 6.0840 3.8798 -0.1898 11 6 7.5349 4.0439 -0.0267 12 6 8.1082 4.6801 -1.2969 13 6 7.3545 5.9828 -1.5911 14 7 7.9191 6.6125 -2.7873 15 6 9.0180 7.4226 -2.6807 16 1 9.4682 7.5976 -1.7148 17 6 9.5527 8.0198 -3.8141 18 7 9.0037 7.8070 -4.9912 19 14 11.0522 9.1243 -3.6687 20 1 12.1853 8.3487 -3.1033 21 1 11.4237 9.6340 -5.0131 22 1 10.7398 10.2678 -2.7742 23 6 5.8735 5.6774 -1.8265 24 6 5.2781 5.0507 -0.5618 25 6 3.4346 1.3022 -0.0064 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2244 2.3532 0.0005 30 1 1.3926 4.5192 0.0008 31 1 7.7360 4.6896 0.8281 32 1 7.9969 3.0698 0.1346 33 1 9.1670 4.8934 -1.1510 34 1 7.9870 3.9931 -2.1344 35 1 7.4553 6.6593 -0.7426 36 1 7.5146 6.4558 -3.6549 37 1 9.3775 8.2240 -5.7832 38 1 5.7735 4.9811 -2.6592 39 1 5.3435 6.6011 -2.0590 40 1 4.2513 4.7408 -0.7560 41 1 5.2930 5.7775 0.2504 42 1 4.0435 0.4103 -0.0110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996867848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:50 Heat of formation + Delta-G solvation = -24.689465 kcal Electronic energy + Delta-G solvation = -24720.302283 eV Core-core repulsion = 21086.997745 eV Total energy + Delta-G solvation = -3633.304539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11666 -40.84063 -39.19767 -38.68013 -36.18164 -33.92455 -32.84921 -32.73276 -31.66229 -30.93422 -28.56189 -26.81299 -25.54234 -24.58049 -23.94859 -23.75789 -21.90203 -20.70552 -19.39076 -18.84208 -18.54429 -17.38996 -17.06434 -16.93463 -16.71368 -16.64362 -16.38459 -15.73052 -15.46555 -15.34167 -15.13798 -14.86050 -14.75826 -14.59899 -14.17505 -13.82119 -13.42180 -13.28839 -13.07558 -12.79925 -12.67154 -12.50716 -12.28216 -12.22220 -12.12693 -11.93947 -11.67348 -11.52574 -11.40786 -10.88290 -10.38780 -10.14104 -9.84208 -9.67099 -8.99411 -7.92487 -5.21140 -0.47840 0.18223 1.47730 1.50868 1.56658 1.60842 1.75097 2.23170 2.57324 2.73057 2.99573 3.40118 3.58844 3.68069 3.85323 3.93269 3.97074 4.06558 4.19303 4.25219 4.34532 4.40553 4.43610 4.43749 4.50378 4.65407 4.70185 4.77720 4.81192 4.92464 4.94364 5.00736 5.11235 5.12678 5.31399 5.42850 5.51106 5.56677 5.76867 6.15283 6.29077 6.32236 6.65857 7.01244 7.35066 8.11114 8.34775 9.30980 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.002769 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.589629 B =10108.839110 C =10507.171704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.162 3.838 4 C -0.224 4.224 5 C 0.134 3.866 6 N -0.484 5.484 7 C 0.103 3.897 8 C 0.561 3.439 9 O -0.575 6.575 10 N -0.584 5.584 11 C 0.117 3.883 12 C -0.137 4.137 13 C 0.172 3.828 14 N -0.737 5.737 15 C -0.237 4.237 16 H 0.077 0.923 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.276 1.276 23 C -0.129 4.129 24 C 0.084 3.916 25 C -0.161 4.161 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.184 0.816 30 H 0.208 0.792 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.163 0.837 41 H 0.079 0.921 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.445 -12.097 13.554 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.108 3.892 4 C -0.244 4.244 5 C -0.024 4.024 6 N -0.200 5.200 7 C -0.032 4.032 8 C 0.349 3.651 9 O -0.455 6.455 10 N -0.314 5.314 11 C -0.006 4.006 12 C -0.178 4.178 13 C 0.064 3.936 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.801 3.199 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.201 1.201 23 C -0.168 4.168 24 C -0.037 4.037 25 C -0.183 4.183 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.201 0.799 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.178 0.822 41 H 0.097 0.903 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.434 -11.933 13.729 28.882 hybrid contribution 0.723 -0.277 -0.796 1.111 sum -21.711 -12.210 12.932 28.066 Atomic orbital electron populations 1.23554 0.74985 1.06319 1.03291 1.86096 1.24651 1.25732 1.87411 1.19264 0.91368 0.86214 0.92378 1.22795 1.03639 0.91674 1.06333 1.23495 0.88957 0.99354 0.90568 1.67503 1.08369 1.28842 1.15268 1.20588 0.92988 0.89689 0.99909 1.18270 0.87060 0.82837 0.76915 1.90734 1.64583 1.37482 1.52682 1.48090 1.08460 1.09277 1.65531 1.21653 0.79441 1.01611 0.97878 1.22487 1.00373 0.98471 0.96428 1.20517 0.91980 0.91601 0.89500 1.42664 1.33683 1.55838 1.05436 1.19603 1.04414 1.19283 0.93590 0.90534 1.25565 1.02877 1.03368 0.95250 1.69820 1.44274 1.49885 0.98300 0.85227 0.79579 0.78943 0.76121 1.20636 1.22364 1.20149 1.22133 0.95515 1.00806 0.98358 1.23155 0.99051 0.86075 0.95464 1.21306 0.93477 0.98761 1.04775 0.90441 0.90635 0.86188 0.79857 0.77521 0.89542 0.90218 0.92032 0.94399 0.93188 0.79803 0.94135 0.93616 0.90194 0.82162 0.90322 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.84 113.37 1.12 1.17 16 2 O -0.33 -5.05 10.51 -90.75 -0.95 -6.00 16 3 C 0.16 2.80 6.73 22.74 0.15 2.95 16 4 C -0.22 -2.39 9.12 22.52 0.21 -2.19 16 5 C 0.13 1.66 11.17 84.74 0.95 2.61 16 6 N -0.48 -10.00 6.12 -185.14 -1.13 -11.13 16 7 C 0.10 2.70 6.58 41.85 0.28 2.97 16 8 C 0.56 18.24 7.65 86.89 0.66 18.91 16 9 O -0.57 -21.99 15.79 -3.76 -0.06 -22.05 16 10 N -0.58 -18.14 2.97 -821.93 -2.44 -20.58 16 11 C 0.12 3.77 6.43 86.36 0.56 4.32 16 12 C -0.14 -5.23 5.69 30.78 0.18 -5.06 16 13 C 0.17 6.94 2.73 45.12 0.12 7.06 16 14 N -0.74 -37.93 5.12 -322.32 -1.65 -39.58 16 15 C -0.24 -13.29 9.93 84.03 0.83 -12.45 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 18 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 19 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 24 C 0.08 2.30 5.89 86.36 0.51 2.81 16 25 C -0.16 -3.85 9.59 22.72 0.22 -3.63 16 26 H 0.08 0.13 7.71 -2.39 -0.02 0.11 16 27 H 0.08 0.17 7.71 -2.39 -0.02 0.15 16 28 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.18 0.44 6.45 -2.91 -0.02 0.42 16 30 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.67 7.00 -2.38 -0.02 2.66 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 36 H 0.37 20.65 7.80 -92.71 -0.72 19.92 16 37 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.16 3.94 4.00 -67.67 -0.27 3.67 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.14 3.63 7.67 -2.91 -0.02 3.61 16 Total: -1.00 -75.55 344.46 2.54 -73.01 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.06 Total: 26.58 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.41 Total: 11.22 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -4.94 Total: -131.52 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.01 Total: -28.05 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.55 2.54 -73.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996867848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.321 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds