Wall clock time and date at job start Fri Apr 10 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35659 * 117.00340 * 2 1 4 4 C 1.39281 * 119.62285 * 180.02562 * 3 2 1 5 5 C 1.38335 * 119.31012 * 179.67755 * 4 3 2 6 6 C 1.38783 * 118.55305 * 0.56336 * 5 4 3 7 7 C 1.39126 * 119.18950 * 359.46187 * 6 5 4 8 8 C 1.48150 * 119.68795 * 180.27549 * 7 6 5 9 9 O 1.21519 * 120.00285 * 338.34032 * 8 7 6 10 10 N 1.34776 * 119.99925 * 158.33868 * 8 7 6 11 11 C 1.46930 * 120.63208 * 359.97438 * 10 8 7 12 12 C 1.52754 * 109.00789 * 233.58178 * 11 10 8 13 13 C 1.53044 * 109.38579 * 305.58893 * 12 11 10 14 14 N 1.46493 * 109.44971 * 181.25656 * 13 12 11 15 15 C 1.36940 * 120.00145 * 84.93512 * 14 13 12 16 16 H 1.07997 * 120.00237 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00056 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47031 * 60.00349 * 19 17 15 21 21 H 1.48507 * 109.47001 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47159 * 299.99689 * 19 17 15 23 23 C 1.53033 * 109.54008 * 61.23545 * 13 12 11 24 24 C 1.46928 * 120.63265 * 180.24906 * 10 8 7 25 25 N 1.31910 * 119.61425 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.46864 * 60.00472 * 1 2 3 27 27 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47001 * 299.99884 * 1 2 3 29 29 H 1.07998 * 120.34666 * 0.02562 * 4 3 2 30 30 H 1.07994 * 120.72302 * 180.32162 * 5 4 3 31 31 H 1.08003 * 120.40378 * 179.73370 * 6 5 4 32 32 H 1.08996 * 109.58141 * 353.41706 * 11 10 8 33 33 H 1.08999 * 109.58328 * 113.84158 * 11 10 8 34 34 H 1.08998 * 109.56460 * 185.54892 * 12 11 10 35 35 H 1.09001 * 109.36394 * 65.49478 * 12 11 10 36 36 H 1.09003 * 109.45413 * 301.21788 * 13 12 11 37 37 H 0.97000 * 120.00420 * 264.93240 * 14 13 12 38 38 H 0.97007 * 120.00039 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.49759 * 178.68545 * 23 13 12 40 40 H 1.09010 * 109.52304 * 58.60554 * 23 13 12 41 41 H 1.08994 * 109.59117 * 246.15852 * 24 10 8 42 42 H 1.09001 * 109.58584 * 6.44437 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4363 1.2723 -0.0005 5 6 4.0577 2.5083 -0.0073 6 6 3.2665 3.6485 -0.0014 7 6 1.8818 3.5136 -0.0003 8 6 1.0267 4.7234 -0.0002 9 8 1.4750 5.7843 0.3874 10 7 -0.2484 4.6474 -0.4301 11 6 -0.8045 3.3720 -0.9023 12 6 -1.3939 3.5723 -2.2972 13 6 -2.4019 4.7234 -2.2623 14 7 -2.9902 4.8972 -3.5926 15 6 -4.0659 4.1385 -3.9700 16 1 -4.4809 3.4123 -3.2868 17 6 -4.6237 4.3036 -5.2304 18 7 -4.1189 5.1896 -6.0625 19 14 -6.0915 3.2692 -5.7450 20 1 -7.2231 3.5192 -4.8164 21 1 -6.4945 3.6345 -7.1268 22 1 -5.7235 1.8312 -5.7011 23 6 -1.6914 6.0135 -1.8464 24 6 -1.1070 5.8396 -0.4411 25 7 1.3191 2.3102 -0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0240 0.3662 -0.0014 30 1 5.1349 2.5842 -0.0131 31 1 3.7203 4.6286 -0.0021 32 1 -0.0143 2.6225 -0.9451 33 1 -1.5885 3.0409 -0.2214 34 1 -1.8957 2.6588 -2.6160 35 1 -0.5931 3.8113 -2.9970 36 1 -3.1893 4.4948 -1.5441 37 1 -2.6178 5.5497 -4.2062 38 1 -4.5084 5.3047 -6.9435 39 1 -2.4051 6.8374 -1.8443 40 1 -0.8878 6.2300 -2.5504 41 1 -1.9163 5.7138 0.2781 42 1 -0.5170 6.7173 -0.1773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997144958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:57 Heat of formation + Delta-G solvation = -25.012329 kcal Electronic energy + Delta-G solvation = -25363.229640 eV Core-core repulsion = 21729.911101 eV Total energy + Delta-G solvation = -3633.318539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18429 -40.78292 -39.08147 -38.45916 -36.22771 -34.25849 -33.49107 -32.26173 -31.64465 -30.99490 -28.41245 -26.90527 -25.59426 -24.43380 -24.00344 -23.72755 -22.02303 -20.77342 -19.18863 -19.03631 -18.69792 -17.42988 -17.07045 -17.02749 -16.91462 -16.65955 -16.30135 -15.52265 -15.45036 -15.22067 -15.17323 -14.83048 -14.57385 -14.44722 -14.23581 -13.75551 -13.31322 -13.22772 -13.11274 -12.80956 -12.71158 -12.65374 -12.28352 -12.22795 -12.10423 -12.05711 -11.76354 -11.55764 -11.35542 -11.01495 -10.96354 -10.16360 -9.84509 -9.54704 -9.00029 -7.93602 -5.22774 -0.41274 0.19713 1.47476 1.50366 1.56307 1.57464 1.83337 2.08034 2.56301 2.67503 2.89502 3.39719 3.55979 3.78835 3.90225 3.91709 4.00703 4.11842 4.17326 4.23145 4.36653 4.38242 4.44936 4.45699 4.47613 4.59704 4.78036 4.81270 4.84811 4.90122 4.99272 5.00948 5.10156 5.14695 5.26163 5.35203 5.45151 5.51568 5.60013 6.12010 6.26169 6.28292 6.52001 6.96358 7.33603 8.08638 8.32664 9.29901 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003810 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.351032 B = 7347.217992 C = 8431.623608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.310 6.310 3 C 0.297 3.703 4 C -0.158 4.158 5 C -0.031 4.031 6 C -0.150 4.150 7 C 0.095 3.905 8 C 0.564 3.436 9 O -0.567 6.567 10 N -0.586 5.586 11 C 0.086 3.914 12 C -0.138 4.138 13 C 0.173 3.827 14 N -0.738 5.738 15 C -0.239 4.239 16 H 0.078 0.922 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.972 3.028 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.277 1.277 23 C -0.127 4.127 24 C 0.119 3.881 25 N -0.520 5.520 26 H 0.054 0.946 27 H 0.123 0.877 28 H 0.060 0.940 29 H 0.176 0.824 30 H 0.193 0.807 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.370 0.630 38 H 0.250 0.750 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.253 -9.712 15.916 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.117 3.883 4 C -0.178 4.178 5 C -0.056 4.056 6 C -0.171 4.171 7 C -0.039 4.039 8 C 0.352 3.648 9 O -0.447 6.447 10 N -0.316 5.316 11 C -0.036 4.036 12 C -0.179 4.179 13 C 0.065 3.935 14 N -0.377 5.377 15 C -0.370 4.370 16 H 0.096 0.904 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.203 1.203 23 C -0.166 4.166 24 C -0.004 4.004 25 N -0.248 5.248 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.079 0.921 29 H 0.194 0.806 30 H 0.210 0.790 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.201 0.799 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.481 -9.590 16.135 24.330 hybrid contribution -0.537 0.218 -1.107 1.250 sum 14.944 -9.372 15.028 23.173 Atomic orbital electron populations 1.23169 0.76044 1.04997 1.02292 1.86252 1.23990 1.23693 1.87739 1.20375 0.90719 0.84422 0.92826 1.21729 0.91095 1.01433 1.03563 1.21909 1.02683 0.89277 0.91749 1.22160 0.92042 1.02258 1.00685 1.20620 0.92976 0.89615 1.00726 1.18276 0.81502 0.87405 0.77623 1.90737 1.73648 1.30199 1.50112 1.48112 1.10862 1.11579 1.61034 1.22858 1.01314 0.85788 0.93665 1.22396 0.98640 1.00460 0.96427 1.20423 0.93145 0.93241 0.86710 1.42651 1.35630 1.45803 1.13639 1.19600 1.05580 1.14016 0.97838 0.90400 1.25556 1.02894 1.01206 0.97165 1.69823 1.44987 1.39232 1.08235 0.85233 0.79571 0.78488 0.76610 1.20319 1.22459 1.20280 1.22052 0.99666 0.98561 0.96299 1.21659 0.93921 0.88178 0.96612 1.67081 1.39791 0.98603 1.19303 0.92762 0.85855 0.92147 0.80614 0.79035 0.82910 0.83984 0.90772 0.91863 0.94475 0.93292 0.79853 0.94133 0.90406 0.93162 0.89508 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.30 113.37 1.17 1.66 16 2 O -0.31 -6.01 10.47 -89.74 -0.94 -6.95 16 3 C 0.30 6.06 7.49 84.93 0.64 6.69 16 4 C -0.16 -2.21 10.05 22.54 0.23 -1.98 16 5 C -0.03 -0.39 10.16 22.42 0.23 -0.16 16 6 C -0.15 -2.92 9.62 22.61 0.22 -2.70 16 7 C 0.10 2.44 6.45 41.84 0.27 2.71 16 8 C 0.56 17.41 7.62 86.88 0.66 18.08 16 9 O -0.57 -19.84 15.93 -3.78 -0.06 -19.90 16 10 N -0.59 -17.68 2.98 -822.81 -2.45 -20.13 16 11 C 0.09 2.49 5.96 86.22 0.51 3.00 16 12 C -0.14 -4.93 5.64 30.53 0.17 -4.76 16 13 C 0.17 6.83 2.73 45.02 0.12 6.96 16 14 N -0.74 -37.41 5.12 -322.82 -1.65 -39.07 16 15 C -0.24 -13.13 9.93 84.03 0.83 -12.29 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -59.88 13.06 21.65 0.28 -59.59 16 19 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 24 C 0.12 3.49 6.44 86.36 0.56 4.05 16 25 N -0.52 -12.52 5.28 -298.21 -1.58 -14.09 16 26 H 0.05 1.02 7.22 -2.39 -0.02 1.00 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 29 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.15 2.82 7.79 -2.91 -0.02 2.79 16 32 H 0.14 3.93 2.97 -56.41 -0.17 3.76 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.92 8.08 -2.39 -0.02 1.91 16 37 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 38 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 2.69 7.00 -2.39 -0.02 2.67 16 Total: -1.00 -71.00 345.37 2.03 -68.96 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.16 Total: 29.75 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.24 Total: 13.17 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.40 Total: -132.88 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.00 Total: -26.84 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.00 2.03 -68.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997144958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.951 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds