Wall clock time and date at job start Fri Apr 10 2020 17:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35428 * 119.47158 * 2 1 4 4 C 1.35763 * 121.23301 * 179.97438 * 3 2 1 5 5 C 1.39473 * 120.12968 * 0.02562 * 4 3 2 6 6 C 1.39340 * 118.95768 * 359.97438 * 5 4 3 7 7 C 1.47081 * 120.58774 * 180.02562 * 6 5 4 8 8 O 1.21645 * 120.00039 * 255.03679 * 7 6 5 9 9 N 1.34773 * 119.99905 * 75.03248 * 7 6 5 10 10 C 1.46927 * 120.63444 * 4.77291 * 9 7 6 11 11 C 1.53629 * 108.54521 * 126.36353 * 10 9 7 12 12 C 1.53036 * 109.23604 * 54.86018 * 11 10 9 13 13 N 1.46510 * 109.45670 * 178.49010 * 12 11 10 14 14 C 1.36929 * 120.00098 * 275.06735 * 13 12 11 15 15 H 1.08002 * 120.00276 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00451 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99433 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00412 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47090 * 60.00366 * 18 16 14 20 20 H 1.48496 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47271 * 300.00505 * 18 16 14 22 22 C 1.53042 * 109.54195 * 298.50553 * 12 11 10 23 23 C 1.46927 * 120.63262 * 185.04958 * 9 7 6 24 24 C 1.34661 * 119.47017 * 179.72075 * 2 1 3 25 25 O 1.21880 * 120.10300 * 0.02562 * 24 2 1 26 26 H 1.08998 * 109.47263 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47448 * 240.00253 * 1 2 3 28 28 H 1.09006 * 109.47151 * 120.00428 * 1 2 3 29 29 H 1.08005 * 119.38458 * 359.97013 * 3 2 1 30 30 H 1.07998 * 119.93697 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.52214 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.58855 * 246.20187 * 10 9 7 33 33 H 1.09002 * 109.58647 * 6.62660 * 10 9 7 34 34 H 1.08995 * 109.63323 * 294.86835 * 11 10 9 35 35 H 1.08994 * 109.42890 * 174.72954 * 11 10 9 36 36 H 1.08997 * 109.46322 * 58.53625 * 12 11 10 37 37 H 0.96998 * 119.99570 * 95.06528 * 13 12 11 38 38 H 0.97001 * 119.99618 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.49774 * 301.42270 * 22 12 11 40 40 H 1.08996 * 109.52614 * 181.33393 * 22 12 11 41 41 H 1.09005 * 109.58570 * 353.38018 * 23 9 7 42 42 H 1.08997 * 109.58637 * 113.65750 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1312 1.1790 0.0000 4 6 3.4882 1.2208 0.0005 5 6 4.2251 0.0366 0.0005 6 6 3.5463 -1.1803 0.0005 7 6 4.2875 -2.4507 0.0011 8 8 4.3595 -3.1134 -1.0165 9 7 4.8870 -2.8806 1.1290 10 6 4.7227 -2.1461 2.3909 11 6 4.2280 -3.1259 3.4658 12 6 5.1925 -4.3111 3.5499 13 7 4.7450 -5.2310 4.5987 14 6 5.1058 -5.0119 5.9012 15 1 5.7200 -4.1607 6.1557 16 6 4.6813 -5.8832 6.8951 17 7 3.9324 -6.9203 6.5851 18 14 5.1742 -5.5847 8.6720 19 1 4.6624 -4.2619 9.1121 20 1 4.5976 -6.6498 9.5311 21 1 6.6547 -5.6052 8.7852 22 6 5.2210 -5.0443 2.2068 23 6 5.7223 -4.0893 1.1190 24 6 2.1274 -1.1724 0.0057 25 8 1.5102 -2.2233 0.0104 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 -0.5139 -0.8900 29 1 1.5726 2.1034 -0.0005 30 1 3.9982 2.1728 0.0001 31 1 5.3047 0.0624 0.0005 32 1 5.6795 -1.7203 2.6931 33 1 3.9916 -1.3488 2.2571 34 1 3.2327 -3.4847 3.2040 35 1 4.1905 -2.6182 4.4295 36 1 6.1929 -3.9492 3.7873 37 1 4.1930 -5.9953 4.3702 38 1 3.6361 -7.5293 7.2795 39 1 4.2161 -5.3850 1.9570 40 1 5.8899 -5.9022 2.2742 41 1 5.6510 -4.5746 0.1455 42 1 6.7593 -3.8185 1.3171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997184971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:59 Heat of formation + Delta-G solvation = -43.490094 kcal Electronic energy + Delta-G solvation = -25312.981993 eV Core-core repulsion = 21678.862198 eV Total energy + Delta-G solvation = -3634.119795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51039 -40.91000 -38.72292 -38.09542 -36.17018 -35.57256 -33.80738 -32.28050 -31.27380 -30.66625 -28.65315 -26.94284 -25.69841 -24.41831 -23.95137 -23.68553 -21.91024 -20.56061 -19.14568 -18.71410 -18.48155 -18.01213 -17.46588 -16.99847 -16.69079 -16.48848 -15.95648 -15.53166 -15.43921 -15.40389 -15.13582 -14.71557 -14.48030 -14.25196 -13.86110 -13.62378 -13.44488 -13.37547 -13.16190 -13.07806 -12.81981 -12.78782 -12.65234 -12.26696 -12.21407 -12.03894 -11.71499 -11.39048 -11.35955 -11.10173 -10.97524 -10.79405 -9.73294 -9.05701 -8.98333 -7.92700 -5.22955 -0.36274 0.85285 1.25263 1.47754 1.51701 1.57664 1.78329 2.04275 2.55294 2.57567 3.39534 3.47385 3.66190 3.78726 3.83627 3.90267 4.01619 4.06865 4.12936 4.16928 4.31302 4.34871 4.36018 4.42051 4.56948 4.71635 4.75241 4.78029 4.83925 4.86162 4.97188 4.99110 5.04215 5.23432 5.25909 5.46351 5.52162 5.56562 5.59378 5.96855 6.27464 6.34144 6.88754 7.07191 7.32963 8.07632 8.32321 9.31247 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.003506 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.090338 B = 7984.514465 C = 8484.790730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.492 5.492 3 C 0.168 3.832 4 C -0.234 4.234 5 C 0.052 3.948 6 C -0.312 4.312 7 C 0.583 3.417 8 O -0.588 6.588 9 N -0.600 5.600 10 C 0.124 3.876 11 C -0.140 4.140 12 C 0.177 3.823 13 N -0.740 5.740 14 C -0.238 4.238 15 H 0.084 0.916 16 C -0.081 4.081 17 N -0.976 5.976 18 Si 0.977 3.023 19 H -0.275 1.275 20 H -0.300 1.300 21 H -0.274 1.274 22 C -0.129 4.129 23 C 0.122 3.878 24 C 0.511 3.489 25 O -0.603 6.603 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.229 0.771 30 H 0.201 0.799 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.367 0.633 38 H 0.249 0.751 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 27.414 -14.100 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.199 5.199 3 C 0.039 3.961 4 C -0.255 4.255 5 C 0.029 3.971 6 C -0.319 4.319 7 C 0.372 3.628 8 O -0.469 6.469 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.181 4.181 12 C 0.068 3.932 13 N -0.379 5.379 14 C -0.370 4.370 15 H 0.102 0.898 16 C -0.272 4.272 17 N -0.627 5.627 18 Si 0.805 3.195 19 H -0.201 1.201 20 H -0.227 1.227 21 H -0.200 1.200 22 C -0.168 4.168 23 C -0.001 4.001 24 C 0.314 3.686 25 O -0.490 6.490 26 H 0.167 0.833 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.245 0.755 30 H 0.218 0.782 31 H 0.179 0.821 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.130 26.455 -14.455 30.167 hybrid contribution -0.512 -1.390 0.942 1.756 sum -1.642 25.064 -13.512 28.522 Atomic orbital electron populations 1.22475 0.75046 1.07264 1.03702 1.45517 1.10808 1.06650 1.56928 1.23317 0.94943 0.89552 0.88292 1.21181 0.92487 0.99871 1.11975 1.22253 1.02134 0.89798 0.82950 1.20536 0.92865 0.95260 1.23214 1.18080 0.77197 0.84978 0.82567 1.90714 1.62731 1.58650 1.34786 1.48197 1.48756 1.27170 1.09027 1.21898 1.02973 0.93684 0.81327 1.22530 0.98966 0.98074 0.98527 1.20402 0.96149 0.89612 0.87016 1.42707 1.61711 1.29874 1.03616 1.19664 1.24857 1.07631 0.84828 0.89804 1.25644 1.01348 0.97782 1.02469 1.69857 1.42225 1.17302 1.33281 0.85160 0.77932 0.76816 0.79551 1.20114 1.22687 1.20032 1.22072 1.00668 0.98986 0.95122 1.21597 0.94696 0.84725 0.99065 1.17005 0.88378 0.83563 0.79629 1.90936 1.70505 1.32073 1.55478 0.83304 0.91394 0.91199 0.75468 0.78224 0.82109 0.87800 0.89494 0.95659 0.91097 0.91921 0.80176 0.94203 0.94740 0.90328 0.90416 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.04 127.77 1.28 1.91 16 2 N -0.49 -8.14 2.98 -673.18 -2.00 -10.14 16 3 C 0.17 0.87 10.28 83.56 0.86 1.72 16 4 C -0.23 -1.30 9.99 21.99 0.22 -1.08 16 5 C 0.05 0.76 9.45 22.83 0.22 0.98 16 6 C -0.31 -8.64 3.84 -19.79 -0.08 -8.72 16 7 C 0.58 20.92 6.69 86.56 0.58 21.50 16 8 O -0.59 -26.09 16.52 -4.17 -0.07 -26.16 16 9 N -0.60 -19.30 2.97 -822.31 -2.44 -21.74 16 10 C 0.12 3.41 6.25 86.51 0.54 3.95 16 11 C -0.14 -5.20 5.67 30.82 0.17 -5.02 16 12 C 0.18 7.19 2.73 45.02 0.12 7.32 16 13 N -0.74 -38.93 5.12 -322.81 -1.65 -40.59 16 14 C -0.24 -13.29 9.93 84.04 0.83 -12.45 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 16 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 17 N -0.98 -61.83 13.06 21.65 0.28 -61.55 16 18 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 C -0.13 -4.89 5.55 30.67 0.17 -4.72 16 23 C 0.12 3.88 6.44 86.36 0.56 4.44 16 24 C 0.51 15.51 7.44 85.16 0.63 16.15 16 25 O -0.60 -25.69 16.54 -4.93 -0.08 -25.77 16 26 H 0.15 -0.13 7.70 -2.39 -0.02 -0.15 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.23 -1.64 7.79 -2.91 -0.02 -1.66 16 30 H 0.20 -0.68 8.06 -2.91 -0.02 -0.70 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.18 6.13 -2.39 -0.01 2.16 16 34 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 37 H 0.37 21.42 7.80 -92.71 -0.72 20.70 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.08 2.68 7.00 -2.38 -0.02 2.66 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -95.41 349.73 2.95 -92.46 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.31 Total: 23.41 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.58 Total: 21.72 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.81 Total: -134.01 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.15 Total: -51.93 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -95.41 2.95 -92.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997184971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.966 kcal (2) G-P(sol) polarization free energy of solvation -95.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds