Wall clock time and date at job start Fri Apr 10 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35694 * 119.43975 * 2 1 4 4 C 1.35272 * 120.99876 * 179.97438 * 3 2 1 5 5 C 1.41147 * 119.86738 * 0.02562 * 4 3 2 6 6 C 1.48461 * 120.53676 * 180.02562 * 5 4 3 7 7 O 1.21474 * 119.99797 * 277.01869 * 6 5 4 8 8 N 1.34770 * 119.99972 * 97.01613 * 6 5 4 9 9 C 1.46919 * 120.63410 * 353.00941 * 8 6 5 10 10 C 1.53198 * 108.77677 * 126.41217 * 9 8 6 11 11 C 1.53036 * 109.31256 * 54.63815 * 10 9 8 12 12 C 1.53041 * 109.53737 * 298.63758 * 11 10 9 13 13 H 1.09007 * 109.49276 * 301.37738 * 12 11 10 14 14 N 1.46502 * 109.49930 * 181.31982 * 12 11 10 15 15 C 1.36939 * 120.00192 * 154.99841 * 14 12 11 16 16 H 1.07997 * 119.99935 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99686 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99503 * 179.72451 * 17 15 14 19 19 Si 1.86793 * 120.00240 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47456 * 90.00345 * 19 17 15 21 21 H 1.48503 * 109.47073 * 210.00034 * 19 17 15 22 22 H 1.48504 * 109.47323 * 330.00047 * 19 17 15 23 23 C 1.46928 * 120.63057 * 173.03157 * 8 6 5 24 24 C 1.38294 * 118.92480 * 0.26799 * 5 4 3 25 25 C 1.34600 * 119.43686 * 180.02562 * 2 1 3 26 26 O 1.22010 * 119.96434 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47484 * 89.99713 * 1 2 3 28 28 H 1.09002 * 109.47357 * 210.00360 * 1 2 3 29 29 H 1.09005 * 109.47416 * 330.00391 * 1 2 3 30 30 H 1.08001 * 119.50252 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.06526 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.58982 * 6.62676 * 9 8 6 33 33 H 1.09002 * 109.71154 * 246.27227 * 9 8 6 34 34 H 1.08998 * 109.49838 * 294.68074 * 10 9 8 35 35 H 1.09007 * 109.49717 * 174.59120 * 10 9 8 36 36 H 1.08999 * 109.46232 * 178.61466 * 11 10 9 37 37 H 1.08997 * 109.44942 * 58.64699 * 11 10 9 38 38 H 0.96997 * 119.99530 * 334.99208 * 14 12 11 39 39 H 0.97004 * 119.99505 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.59009 * 113.79944 * 23 8 6 41 41 H 1.09003 * 109.58795 * 353.37251 * 23 8 6 42 42 H 1.07996 * 120.49573 * 179.72504 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1319 1.1817 0.0000 4 6 3.4842 1.2185 0.0005 5 6 4.2201 0.0141 0.0005 6 6 5.7045 0.0372 0.0017 7 8 6.3106 0.1756 -1.0420 8 7 6.3796 -0.0955 1.1605 9 6 5.6664 -0.1102 2.4449 10 6 6.0708 -1.3689 3.2190 11 6 7.5952 -1.4170 3.3460 12 6 8.2230 -1.4848 1.9520 13 1 7.8545 -2.3677 1.4296 14 7 9.6807 -1.5626 2.0754 15 6 10.4234 -2.1295 1.0742 16 1 9.9344 -2.5196 0.1938 17 6 11.8046 -2.2028 1.1911 18 7 12.5179 -2.7526 0.2312 19 14 12.6503 -1.5274 2.7135 20 1 12.7558 -2.5980 3.7372 21 1 14.0100 -1.0506 2.3540 22 1 11.8576 -0.3966 3.2596 23 6 7.8430 -0.2275 1.1635 24 6 3.5360 -1.1878 -0.0057 25 6 2.1265 -1.1722 -0.0005 26 8 1.5054 -2.2224 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.5748 2.1069 0.0004 31 1 3.9996 2.1676 0.0009 32 1 4.5913 -0.1211 2.2658 33 1 5.9316 0.7751 3.0228 34 1 5.7221 -2.2525 2.6846 35 1 5.6235 -1.3442 4.2128 36 1 7.8843 -2.2989 3.9177 37 1 7.9451 -0.5211 3.8587 38 1 10.1198 -1.2125 2.8663 39 1 13.4831 -2.8041 0.3130 40 1 8.2880 0.6483 1.6357 41 1 8.2040 -0.3159 0.1388 42 1 4.0736 -2.1244 -0.0103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999528409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:05 Heat of formation + Delta-G solvation = -39.423885 kcal Electronic energy + Delta-G solvation = -25103.122935 eV Core-core repulsion = 21469.179464 eV Total energy + Delta-G solvation = -3633.943471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48215 -41.19139 -38.91554 -38.00805 -36.41507 -35.57519 -33.95697 -32.97434 -31.11494 -30.59774 -28.95067 -26.75337 -25.71764 -25.01461 -24.16718 -23.18272 -21.92832 -20.48102 -19.57017 -18.76480 -18.56679 -18.14959 -17.50481 -17.02488 -16.72692 -16.53304 -16.21488 -15.71199 -15.48974 -15.23708 -15.14757 -14.88654 -14.30116 -14.24095 -14.19880 -13.99043 -13.84505 -13.45391 -13.36383 -12.98242 -12.91248 -12.77895 -12.55530 -12.18087 -11.97072 -11.92110 -11.84417 -11.65670 -11.40370 -11.20171 -11.09323 -10.80236 -9.92938 -9.30766 -9.09089 -8.05423 -5.42239 -0.46786 0.69789 1.28009 1.36761 1.42853 1.49827 1.64202 1.80020 2.44407 2.46963 3.15411 3.25184 3.49602 3.67145 3.73415 3.92355 3.99907 4.05787 4.08601 4.16585 4.22242 4.32911 4.45062 4.49481 4.55258 4.61837 4.69136 4.81456 4.85488 4.86576 4.91821 4.97436 5.10007 5.15504 5.33036 5.37934 5.42228 5.45560 5.72478 5.94684 6.17882 6.24518 6.84629 6.89160 7.03650 7.75355 7.98360 9.16444 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.003212 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.504155 B = 8716.546222 C = 8887.904311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.490 5.490 3 C 0.175 3.825 4 C -0.223 4.223 5 C 0.007 3.993 6 C 0.546 3.454 7 O -0.578 6.578 8 N -0.593 5.593 9 C 0.104 3.896 10 C -0.125 4.125 11 C -0.120 4.120 12 C 0.168 3.832 13 H 0.028 0.972 14 N -0.741 5.741 15 C -0.240 4.240 16 H 0.043 0.957 17 C -0.065 4.065 18 N -0.986 5.986 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.243 1.243 23 C 0.105 3.895 24 C -0.240 4.240 25 C 0.510 3.490 26 O -0.595 6.595 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.233 0.767 31 H 0.172 0.828 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.372 0.628 39 H 0.259 0.741 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.469 15.477 9.400 33.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.199 5.199 3 C 0.047 3.953 4 C -0.246 4.246 5 C 0.000 4.000 6 C 0.334 3.666 7 O -0.458 6.458 8 N -0.324 5.324 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.158 4.158 12 C 0.058 3.942 13 H 0.046 0.954 14 N -0.385 5.385 15 C -0.371 4.371 16 H 0.061 0.939 17 C -0.257 4.257 18 N -0.636 5.636 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.167 1.167 23 C -0.020 4.020 24 C -0.263 4.263 25 C 0.313 3.687 26 O -0.481 6.481 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.250 0.750 31 H 0.190 0.810 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.206 0.794 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.549 14.763 8.688 33.294 hybrid contribution 1.648 -0.532 -0.177 1.741 sum -26.901 14.231 8.511 31.601 Atomic orbital electron populations 1.22531 0.74518 1.06633 1.05235 1.45552 1.11102 1.06336 1.56882 1.22753 0.92764 0.90260 0.89492 1.20828 0.93278 0.97503 1.12949 1.20322 0.91602 0.95635 0.92474 1.19092 0.88019 0.75997 0.83501 1.90819 1.70317 1.51348 1.33312 1.48266 1.07333 1.69896 1.06915 1.22110 0.97229 0.99906 0.82406 1.21888 0.94610 0.97551 1.02282 1.21793 0.95877 1.03418 0.94724 1.20647 0.82743 0.94351 0.96418 0.95427 1.42615 1.02548 1.72283 1.21048 1.18949 0.89745 1.30408 0.97970 0.93914 1.25655 0.96777 1.01548 1.01695 1.69928 1.05993 1.51638 1.35995 0.85266 0.77527 0.79187 0.78874 1.20068 1.22374 1.16683 1.22300 0.78445 1.00060 1.01229 1.22238 0.93095 0.98351 1.12623 1.16882 0.88434 0.83617 0.79728 1.90933 1.69964 1.31612 1.55635 0.89508 0.90541 0.84571 0.75040 0.81012 0.88285 0.87945 0.92769 0.86703 0.91233 0.89822 0.79372 0.93207 0.90341 0.93583 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.29 10.34 127.77 1.32 1.61 16 2 N -0.49 -6.27 2.98 -674.31 -2.01 -8.28 16 3 C 0.18 1.06 10.25 83.41 0.86 1.92 16 4 C -0.22 -2.87 9.78 22.30 0.22 -2.65 16 5 C 0.01 0.17 3.70 -19.82 -0.07 0.09 16 6 C 0.55 17.53 7.16 86.97 0.62 18.15 16 7 O -0.58 -24.78 16.55 -3.63 -0.06 -24.84 16 8 N -0.59 -17.14 2.97 -821.62 -2.44 -19.58 16 9 C 0.10 1.92 6.36 86.37 0.55 2.47 16 10 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 11 C -0.12 -3.14 5.35 30.62 0.16 -2.98 16 12 C 0.17 6.42 2.92 45.07 0.13 6.56 16 13 H 0.03 1.22 8.08 -2.38 -0.02 1.20 16 14 N -0.74 -34.62 4.93 -322.57 -1.59 -36.21 16 15 C -0.24 -14.19 10.41 84.03 0.88 -13.31 16 16 H 0.04 2.88 8.06 -2.91 -0.02 2.85 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.99 -65.25 13.97 21.65 0.30 -64.95 16 19 Si 0.97 45.34 27.73 68.60 1.90 47.24 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.24 -9.93 6.52 99.48 0.65 -9.28 16 23 C 0.10 3.86 6.00 86.36 0.52 4.38 16 24 C -0.24 -6.30 9.65 22.95 0.22 -6.08 16 25 C 0.51 12.42 7.42 84.94 0.63 13.05 16 26 O -0.59 -19.30 16.62 -5.35 -0.09 -19.39 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.81 7.37 -2.39 -0.02 0.80 16 29 H 0.14 -0.53 8.00 -2.38 -0.02 -0.54 16 30 H 0.23 -1.46 8.02 -2.91 -0.02 -1.48 16 31 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.10 1.48 6.20 -2.39 -0.01 1.47 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.37 15.96 5.66 -92.71 -0.52 15.44 16 39 H 0.26 16.22 8.31 -92.71 -0.77 15.44 16 40 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.05 2.15 7.05 -2.39 -0.02 2.14 16 42 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -92.82 347.28 3.15 -89.67 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.45 Total: 18.84 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.69 Total: 17.49 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -5.74 Total: -129.02 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.15 Total: -44.23 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Total: -92.82 3.15 -89.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999528409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.249 kcal (2) G-P(sol) polarization free energy of solvation -92.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds