Wall clock time and date at job start Fri Apr 10 2020 17:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34597 * 119.48134 * 2 1 4 4 C 1.37995 * 120.45942 * 180.02562 * 3 2 1 5 5 C 1.47449 * 120.25970 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00038 * 260.51788 * 5 4 3 7 7 N 1.34778 * 119.99988 * 80.51444 * 5 4 3 8 8 C 1.46925 * 120.63292 * 354.77163 * 7 5 4 9 9 C 1.53194 * 108.77418 * 126.37019 * 8 7 5 10 10 C 1.53039 * 109.30974 * 54.63734 * 9 8 7 11 11 C 1.53038 * 109.54065 * 298.63238 * 10 9 8 12 12 H 1.09002 * 109.49726 * 301.38621 * 11 10 9 13 13 N 1.46494 * 109.49562 * 181.32115 * 11 10 9 14 14 C 1.36946 * 119.99919 * 155.00408 * 13 11 10 15 15 H 1.08000 * 120.00000 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00063 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99782 * 359.71789 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47466 * 59.99863 * 18 16 14 20 20 H 1.48497 * 109.47013 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46798 * 299.99559 * 18 16 14 22 22 C 1.46928 * 120.62743 * 174.75409 * 7 5 4 23 23 C 1.41601 * 119.48603 * 0.23238 * 4 3 2 24 24 C 1.35979 * 119.00604 * 359.47058 * 23 4 3 25 25 C 1.34546 * 119.47299 * 180.02562 * 2 1 3 26 26 O 1.21964 * 119.74740 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.46682 * 89.99301 * 1 2 3 28 28 H 1.08991 * 109.47450 * 209.99910 * 1 2 3 29 29 H 1.08997 * 109.46733 * 330.00358 * 1 2 3 30 30 H 1.07997 * 119.76761 * 0.02625 * 3 2 1 31 31 H 1.08998 * 109.58302 * 6.58487 * 8 7 5 32 32 H 1.08998 * 109.58688 * 246.16144 * 8 7 5 33 33 H 1.08996 * 109.49439 * 294.68604 * 9 8 7 34 34 H 1.09000 * 109.51807 * 174.60769 * 9 8 7 35 35 H 1.09002 * 109.45662 * 178.61278 * 10 9 8 36 36 H 1.08998 * 109.44762 * 58.65067 * 10 9 8 37 37 H 0.97000 * 120.00266 * 334.99800 * 13 11 10 38 38 H 0.97006 * 119.99846 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.58486 * 113.84515 * 22 7 5 40 40 H 1.08994 * 109.59129 * 353.41712 * 22 7 5 41 41 H 1.07995 * 120.49806 * 179.74726 * 23 4 3 42 42 H 1.08005 * 120.24914 * 180.24167 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1952 -0.0005 5 6 4.2284 2.4813 -0.0011 6 8 4.6767 2.9266 -1.0402 7 7 4.3906 3.1635 1.1499 8 6 3.7581 2.6978 2.3916 9 6 4.8334 2.5718 3.4755 10 6 5.5757 3.9034 3.6092 11 6 6.2628 4.2418 2.2843 12 1 6.9551 3.4427 2.0191 13 7 6.9989 5.5007 2.4228 14 6 8.0704 5.7603 1.6104 15 1 8.3729 5.0368 0.8679 16 6 8.7676 6.9535 1.7413 17 7 8.3955 7.8377 2.6425 18 14 10.2296 7.3073 0.6336 19 1 9.7888 7.3031 -0.7844 20 1 10.7967 8.6372 0.9722 21 1 11.2658 6.2624 0.8330 22 6 5.2037 4.3867 1.1869 23 6 4.2251 -0.0253 -0.0061 24 6 3.5344 -1.1966 0.0002 25 6 2.1270 -1.1713 -0.0005 26 8 1.5029 -2.2192 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.5752 2.0998 0.0004 31 1 3.2936 1.7263 2.2230 32 1 3.0023 3.4164 2.7085 33 1 5.5387 1.7883 3.1987 34 1 4.3642 2.3196 4.4264 35 1 6.3249 3.8239 4.3969 36 1 4.8656 4.6909 3.8616 37 1 6.7274 6.1505 3.0899 38 1 8.8825 8.6716 2.7337 39 1 4.5658 5.2430 1.4056 40 1 5.6930 4.5295 0.2235 41 1 5.3050 -0.0259 -0.0107 42 1 4.0617 -2.1391 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999587093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:15 Heat of formation + Delta-G solvation = -17.024558 kcal Electronic energy + Delta-G solvation = -25080.229486 eV Core-core repulsion = 21447.257322 eV Total energy + Delta-G solvation = -3632.972163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77229 -39.91575 -37.52319 -36.96364 -34.97066 -34.45921 -32.36520 -31.26747 -30.45512 -28.40130 -28.04069 -25.60155 -24.26455 -24.02447 -23.13257 -21.94344 -20.65874 -19.29483 -17.89082 -17.74865 -17.12075 -17.01781 -16.53049 -16.17644 -15.58083 -15.05431 -14.59579 -14.51442 -14.23797 -14.16974 -13.65264 -13.61026 -13.48264 -13.24911 -12.94916 -12.75780 -12.51298 -12.40775 -12.23147 -11.99041 -11.40060 -11.07875 -10.85836 -10.70651 -10.63798 -10.49563 -10.31530 -10.26480 -9.91331 -9.88511 -9.67187 -9.11383 -8.43921 -8.26295 -7.04271 -5.81992 -3.12120 0.47076 1.32914 2.15368 2.63540 3.09409 3.32474 3.44036 3.48067 3.49706 4.12895 4.19306 4.53838 4.55844 4.58746 4.73245 4.80575 4.86487 4.96410 5.04518 5.17004 5.19939 5.43420 5.47784 5.54441 5.61301 5.63421 5.74827 5.82902 5.90686 5.98018 6.06714 6.11236 6.16361 6.29293 6.42684 6.61711 6.65176 6.77054 6.94289 7.53064 7.64317 7.67885 8.22872 8.36253 9.47997 10.01467 10.36477 11.40088 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.003170 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.233797 B = 8830.361897 C = 9208.280395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.491 5.491 3 C 0.164 3.836 4 C -0.222 4.222 5 C 0.569 3.431 6 O -0.529 6.529 7 N -0.597 5.597 8 C 0.107 3.893 9 C -0.130 4.130 10 C -0.126 4.126 11 C 0.169 3.831 12 H 0.051 0.949 13 N -0.718 5.718 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.092 3.908 23 C 0.015 3.985 24 C -0.241 4.241 25 C 0.513 3.487 26 O -0.550 6.550 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -14.382 0.028 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.199 5.199 3 C 0.033 3.967 4 C -0.231 4.231 5 C 0.354 3.646 6 O -0.405 6.405 7 N -0.330 5.330 8 C -0.016 4.016 9 C -0.168 4.168 10 C -0.165 4.165 11 C 0.057 3.943 12 H 0.069 0.931 13 N -0.358 5.358 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.033 4.033 23 C -0.007 4.007 24 C -0.263 4.263 25 C 0.316 3.684 26 O -0.433 6.433 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.186 0.814 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.513 -14.786 -0.633 22.175 hybrid contribution 0.741 0.649 -0.366 1.051 sum -15.773 -14.137 -1.000 21.205 Atomic orbital electron populations 1.22259 0.76661 1.05335 1.04334 1.45113 1.09639 1.06710 1.58469 1.22077 0.92482 0.89915 0.92177 1.19519 0.92277 0.95308 1.15960 1.17810 0.79948 0.83052 0.83791 1.90844 1.49818 1.68578 1.31306 1.48320 1.49930 1.26918 1.07828 1.21740 0.95531 0.99748 0.84567 1.21873 0.98005 0.98941 0.98017 1.21832 0.99544 0.95951 0.99151 1.20490 0.91570 0.90669 0.91556 0.93075 1.42370 1.33511 1.17110 1.42821 1.19223 1.04865 1.01213 1.12311 0.91066 1.24746 0.99787 0.96829 0.99189 1.69650 1.42427 1.09402 1.36511 0.86265 0.82511 0.77127 0.80304 1.21065 1.21674 1.21177 1.22875 0.93130 0.83695 1.03559 1.21368 1.01057 0.90150 0.88151 1.22010 0.92257 1.00021 1.11976 1.17233 0.89477 0.82538 0.79196 1.90936 1.69550 1.29954 1.52863 0.90257 0.88400 0.89299 0.81431 0.90471 0.91308 0.91502 0.91024 0.91351 0.92015 0.78041 0.93374 0.91827 0.89010 0.84090 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 10.33 59.85 0.62 0.92 16 2 N -0.49 -4.22 2.95 -126.73 -0.37 -4.59 16 3 C 0.16 1.34 9.36 -16.43 -0.15 1.19 16 4 C -0.22 -2.39 3.90 -104.95 -0.41 -2.80 16 5 C 0.57 8.14 7.10 -12.51 -0.09 8.05 16 6 O -0.53 -9.99 16.54 5.27 0.09 -9.90 16 7 N -0.60 -8.16 2.97 -174.02 -0.52 -8.67 16 8 C 0.11 1.08 6.30 -3.71 -0.02 1.06 16 9 C -0.13 -1.40 6.08 -26.61 -0.16 -1.57 16 10 C -0.13 -1.84 5.35 -26.69 -0.14 -1.98 16 11 C 0.17 3.14 2.92 -67.81 -0.20 2.94 16 12 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 13 N -0.72 -17.16 5.12 -53.31 -0.27 -17.44 16 14 C -0.25 -6.66 9.93 -15.05 -0.15 -6.81 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 18 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.09 1.60 6.00 -3.71 -0.02 1.58 16 23 C 0.01 0.15 9.86 -39.11 -0.39 -0.24 16 24 C -0.24 -2.47 9.97 -39.44 -0.39 -2.87 16 25 C 0.51 5.91 7.40 -15.41 -0.11 5.80 16 26 O -0.55 -8.05 16.58 4.95 0.08 -7.97 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.62 7.36 -51.93 -0.38 0.24 16 29 H 0.09 0.22 8.00 -51.93 -0.42 -0.20 16 30 H 0.17 0.91 8.02 -52.49 -0.42 0.49 16 31 H 0.08 0.64 5.88 -51.93 -0.31 0.33 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.39 9.73 7.80 -40.82 -0.32 9.41 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.91 7.04 -51.93 -0.37 1.54 16 41 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -34.74 349.54 -7.73 -42.46 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.98 Total: 5.45 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.72 Total: 4.92 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.44 Total: -57.47 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.74 -7.73 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999587093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.437 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds