Wall clock time and date at job start Fri Apr 10 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34597 * 119.48134 * 2 1 4 4 C 1.37995 * 120.45942 * 180.02562 * 3 2 1 5 5 C 1.47449 * 120.25970 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00038 * 260.51788 * 5 4 3 7 7 N 1.34778 * 119.99988 * 80.51444 * 5 4 3 8 8 C 1.46925 * 120.63292 * 354.77163 * 7 5 4 9 9 C 1.53194 * 108.77418 * 126.37019 * 8 7 5 10 10 C 1.53039 * 109.30974 * 54.63734 * 9 8 7 11 11 C 1.53038 * 109.54065 * 298.63238 * 10 9 8 12 12 H 1.09002 * 109.49726 * 301.38621 * 11 10 9 13 13 N 1.46494 * 109.49562 * 181.32115 * 11 10 9 14 14 C 1.36946 * 119.99919 * 155.00408 * 13 11 10 15 15 H 1.08000 * 120.00000 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00063 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99782 * 359.71789 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47466 * 59.99863 * 18 16 14 20 20 H 1.48497 * 109.47013 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46798 * 299.99559 * 18 16 14 22 22 C 1.46928 * 120.62743 * 174.75409 * 7 5 4 23 23 C 1.41601 * 119.48603 * 0.23238 * 4 3 2 24 24 C 1.35979 * 119.00604 * 359.47058 * 23 4 3 25 25 C 1.34546 * 119.47299 * 180.02562 * 2 1 3 26 26 O 1.21964 * 119.74740 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.46682 * 89.99301 * 1 2 3 28 28 H 1.08991 * 109.47450 * 209.99910 * 1 2 3 29 29 H 1.08997 * 109.46733 * 330.00358 * 1 2 3 30 30 H 1.07997 * 119.76761 * 0.02625 * 3 2 1 31 31 H 1.08998 * 109.58302 * 6.58487 * 8 7 5 32 32 H 1.08998 * 109.58688 * 246.16144 * 8 7 5 33 33 H 1.08996 * 109.49439 * 294.68604 * 9 8 7 34 34 H 1.09000 * 109.51807 * 174.60769 * 9 8 7 35 35 H 1.09002 * 109.45662 * 178.61278 * 10 9 8 36 36 H 1.08998 * 109.44762 * 58.65067 * 10 9 8 37 37 H 0.97000 * 120.00266 * 334.99800 * 13 11 10 38 38 H 0.97006 * 119.99846 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.58486 * 113.84515 * 22 7 5 40 40 H 1.08994 * 109.59129 * 353.41712 * 22 7 5 41 41 H 1.07995 * 120.49806 * 179.74726 * 23 4 3 42 42 H 1.08005 * 120.24914 * 180.24167 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1952 -0.0005 5 6 4.2284 2.4813 -0.0011 6 8 4.6767 2.9266 -1.0402 7 7 4.3906 3.1635 1.1499 8 6 3.7581 2.6978 2.3916 9 6 4.8334 2.5718 3.4755 10 6 5.5757 3.9034 3.6092 11 6 6.2628 4.2418 2.2843 12 1 6.9551 3.4427 2.0191 13 7 6.9989 5.5007 2.4228 14 6 8.0704 5.7603 1.6104 15 1 8.3729 5.0368 0.8679 16 6 8.7676 6.9535 1.7413 17 7 8.3955 7.8377 2.6425 18 14 10.2296 7.3073 0.6336 19 1 9.7888 7.3031 -0.7844 20 1 10.7967 8.6372 0.9722 21 1 11.2658 6.2624 0.8330 22 6 5.2037 4.3867 1.1869 23 6 4.2251 -0.0253 -0.0061 24 6 3.5344 -1.1966 0.0002 25 6 2.1270 -1.1713 -0.0005 26 8 1.5029 -2.2192 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.5752 2.0998 0.0004 31 1 3.2936 1.7263 2.2230 32 1 3.0023 3.4164 2.7085 33 1 5.5387 1.7883 3.1987 34 1 4.3642 2.3196 4.4264 35 1 6.3249 3.8239 4.3969 36 1 4.8656 4.6909 3.8616 37 1 6.7274 6.1505 3.0899 38 1 8.8825 8.6716 2.7337 39 1 4.5658 5.2430 1.4056 40 1 5.6930 4.5295 0.2235 41 1 5.3050 -0.0259 -0.0107 42 1 4.0617 -2.1391 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999587093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:14 Heat of formation + Delta-G solvation = -40.970886 kcal Electronic energy + Delta-G solvation = -25081.267876 eV Core-core repulsion = 21447.257322 eV Total energy + Delta-G solvation = -3634.010554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.58344 -41.05898 -38.75597 -37.94779 -36.19555 -35.66271 -33.87930 -32.72014 -31.45548 -29.82570 -28.74984 -26.69965 -25.85430 -25.07428 -24.00962 -23.22824 -21.89717 -20.46059 -19.12951 -18.80587 -18.54913 -17.91925 -17.43703 -17.08755 -16.70244 -16.47833 -15.93895 -15.59636 -15.41383 -15.31556 -15.09500 -14.99382 -14.26936 -14.21875 -13.96780 -13.89220 -13.64254 -13.35030 -13.14049 -13.13555 -12.87259 -12.74994 -12.47264 -12.24358 -11.97375 -11.87355 -11.65319 -11.31934 -11.26318 -11.18284 -11.09080 -10.95998 -9.75230 -9.08456 -8.99695 -7.97071 -5.25837 -0.25228 0.46921 1.35637 1.46342 1.48476 1.54492 1.60111 2.04184 2.49242 2.55349 3.35629 3.37560 3.54822 3.77126 3.79639 3.82827 4.06009 4.07815 4.10794 4.25090 4.36582 4.40724 4.43030 4.43209 4.64062 4.76355 4.77994 4.83985 4.90348 4.93512 4.94464 5.06707 5.12596 5.18431 5.32517 5.41636 5.46604 5.49086 5.59510 5.85275 6.25797 6.42746 6.81866 7.09888 7.32744 8.05761 8.30045 9.25363 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.003170 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.233797 B = 8830.361897 C = 9208.280395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.483 5.483 3 C 0.196 3.804 4 C -0.242 4.242 5 C 0.574 3.426 6 O -0.583 6.583 7 N -0.592 5.592 8 C 0.105 3.895 9 C -0.122 4.122 10 C -0.118 4.118 11 C 0.166 3.834 12 H 0.033 0.967 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.067 0.933 16 C -0.067 4.067 17 N -0.964 5.964 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.108 3.892 23 C 0.021 3.979 24 C -0.250 4.250 25 C 0.504 3.496 26 O -0.589 6.589 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.206 0.794 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.377 0.623 38 H 0.253 0.747 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.143 0.857 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 -15.244 0.660 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.189 5.189 3 C 0.064 3.936 4 C -0.250 4.250 5 C 0.362 3.638 6 O -0.463 6.463 7 N -0.324 5.324 8 C -0.016 4.016 9 C -0.161 4.161 10 C -0.156 4.156 11 C 0.056 3.944 12 H 0.051 0.949 13 N -0.369 5.369 14 C -0.377 4.377 15 H 0.085 0.915 16 C -0.260 4.260 17 N -0.614 5.614 18 Si 0.795 3.205 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.018 4.018 23 C -0.001 4.001 24 C -0.272 4.272 25 C 0.309 3.691 26 O -0.475 6.475 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.223 0.777 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.210 0.790 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.161 0.839 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.730 -15.702 0.019 24.441 hybrid contribution 1.329 0.879 -0.564 1.690 sum -17.401 -14.823 -0.546 22.865 Atomic orbital electron populations 1.22581 0.74334 1.06835 1.05473 1.45206 1.11099 1.06005 1.56590 1.22476 0.91653 0.90830 0.88661 1.19155 0.93313 0.93302 1.19268 1.18221 0.79150 0.83604 0.82874 1.90823 1.52115 1.70046 1.33318 1.48298 1.49186 1.25531 1.09380 1.22063 0.95487 1.01790 0.82296 1.21863 0.97918 0.96171 1.00129 1.21737 0.99477 0.98528 0.95890 1.20671 0.91411 0.87833 0.94455 0.94934 1.42510 1.33567 1.18679 1.42187 1.19492 1.05381 1.00869 1.11939 0.91536 1.25453 1.02563 0.97035 1.00917 1.69778 1.43694 1.09686 1.38226 0.85333 0.79782 0.76814 0.78590 1.20893 1.21766 1.20459 1.22272 0.93165 0.85696 1.00666 1.21359 1.01261 0.89935 0.87576 1.22002 0.92023 1.00311 1.12824 1.17419 0.89847 0.82863 0.79005 1.90917 1.70282 1.31396 1.54886 0.89330 0.89449 0.85323 0.77688 0.87723 0.88855 0.91937 0.87483 0.92315 0.91255 0.78993 0.93865 0.91731 0.93060 0.83907 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.34 10.33 127.77 1.32 1.66 16 2 N -0.48 -6.68 2.95 -673.11 -1.99 -8.67 16 3 C 0.20 2.41 9.36 84.21 0.79 3.20 16 4 C -0.24 -4.62 3.90 -20.08 -0.08 -4.70 16 5 C 0.57 15.73 7.10 86.67 0.62 16.34 16 6 O -0.58 -22.28 16.54 -4.07 -0.07 -22.35 16 7 N -0.59 -15.19 2.97 -822.74 -2.45 -17.63 16 8 C 0.10 1.69 6.30 86.36 0.54 2.23 16 9 C -0.12 -2.23 6.08 30.67 0.19 -2.04 16 10 C -0.12 -3.24 5.35 30.62 0.16 -3.08 16 11 C 0.17 6.23 2.92 45.07 0.13 6.36 16 12 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 13 N -0.73 -35.68 5.12 -322.57 -1.65 -37.34 16 14 C -0.24 -13.62 9.93 84.03 0.83 -12.79 16 15 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 16 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 17 N -0.96 -57.93 13.06 21.65 0.28 -57.65 16 18 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 C 0.11 3.78 6.00 86.36 0.52 4.30 16 23 C 0.02 0.39 9.86 22.57 0.22 0.61 16 24 C -0.25 -4.80 9.97 22.36 0.22 -4.58 16 25 C 0.50 10.73 7.40 84.89 0.63 11.36 16 26 O -0.59 -16.71 16.58 -5.20 -0.09 -16.79 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 0.89 7.36 -2.39 -0.02 0.87 16 29 H 0.13 -0.08 8.00 -2.39 -0.02 -0.10 16 30 H 0.21 1.03 8.02 -2.91 -0.02 1.01 16 31 H 0.10 1.21 5.88 -2.39 -0.01 1.19 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.38 19.46 7.80 -92.71 -0.72 18.74 16 38 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 39 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.05 2.22 7.04 -2.39 -0.02 2.21 16 41 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -79.46 349.54 2.95 -76.51 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.31 Total: 19.86 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.56 Total: 15.53 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.80 Total: -121.29 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.15 Total: -39.14 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.46 2.95 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999587093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.540 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds