Wall clock time and date at job start Fri Apr 10 2020 17:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 N 1.46503 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.35760 * 119.62110 * 89.99926 * 6 5 3 8 8 C 1.35348 * 120.70322 * 179.97438 * 7 6 5 9 9 C 1.40202 * 119.94632 * 0.02562 * 8 7 6 10 10 C 1.36398 * 119.26550 * 0.02562 * 9 8 7 11 11 C 1.34656 * 119.62648 * 269.73281 * 6 5 3 12 12 O 1.22064 * 119.98547 * 359.97438 * 11 6 5 13 13 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 14 14 C 1.53782 * 113.61652 * 60.00231 * 13 2 1 15 15 C 1.53781 * 87.08260 * 220.01840 * 14 13 2 16 16 N 1.46497 * 113.61305 * 270.79919 * 15 14 13 17 17 C 1.36944 * 119.99791 * 203.46713 * 16 15 14 18 18 H 1.07993 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99762 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00190 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47113 * 89.99658 * 21 19 17 23 23 H 1.48503 * 109.46988 * 209.99850 * 21 19 17 24 24 H 1.48501 * 109.46739 * 329.99844 * 21 19 17 25 25 C 1.53786 * 87.17350 * 25.39213 * 15 14 13 26 26 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 27 27 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 28 28 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 29 29 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 30 30 H 1.08995 * 109.47131 * 60.00147 * 5 3 2 31 31 H 1.08001 * 119.65172 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.03105 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.36897 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.34967 * 180.02562 * 10 9 8 35 35 H 1.09002 * 112.84713 * 191.20024 * 13 2 1 36 36 H 1.09001 * 113.61250 * 105.46657 * 14 13 2 37 37 H 1.08997 * 113.61225 * 334.56498 * 14 13 2 38 38 H 1.09002 * 113.61445 * 139.98212 * 15 14 13 39 39 H 0.96995 * 120.00146 * 23.47603 * 16 15 14 40 40 H 0.97005 * 119.99972 * 180.02562 * 20 19 17 41 41 H 1.08993 * 113.61491 * 89.15923 * 25 15 14 42 42 H 1.09000 * 113.61138 * 220.06261 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3373 3.5858 0.0002 7 6 2.7743 4.0958 -1.1797 8 6 3.6533 5.1248 -1.2046 9 6 4.1219 5.6741 -0.0028 10 6 3.6826 5.1596 1.1816 11 6 2.7648 4.0953 1.1710 12 8 2.3587 3.6295 2.2236 13 6 2.1975 -1.2687 0.0006 14 6 1.8955 -2.1550 -1.2193 15 6 1.9130 -3.3527 -0.2548 16 7 3.2394 -3.9515 -0.0869 17 6 3.3561 -5.2537 0.3206 18 1 2.4704 -5.8392 0.5178 19 6 4.6129 -5.8213 0.4792 20 7 4.7250 -7.0729 0.8704 21 14 6.1450 -4.8087 0.1374 22 1 6.5718 -4.1210 1.3823 23 1 7.2340 -5.7021 -0.3330 24 1 5.8470 -3.7981 -0.9091 25 6 1.5384 -2.3625 0.8606 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5139 29 1 0.7591 2.5298 -0.8908 30 1 0.7584 2.5302 0.8891 31 1 2.4161 3.6767 -2.1084 32 1 3.9934 5.5224 -2.1493 33 1 4.8237 6.4949 -0.0147 34 1 4.0319 5.5697 2.1177 35 1 3.2625 -1.1425 0.1956 36 1 2.6999 -2.1747 -1.9546 37 1 0.9184 -1.9671 -1.6643 38 1 1.1383 -4.0911 -0.4615 39 1 4.0349 -3.4257 -0.2643 40 1 5.6033 -7.4695 0.9816 41 1 0.4636 -2.2314 0.9853 42 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999819511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:27 Heat of formation + Delta-G solvation = 20.103213 kcal Electronic energy + Delta-G solvation = -24859.118502 eV Core-core repulsion = 21227.756320 eV Total energy + Delta-G solvation = -3631.362182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72454 -40.10578 -38.20981 -37.07881 -35.07700 -34.77271 -33.03036 -30.54660 -30.15770 -28.75573 -27.27746 -25.30078 -24.72005 -24.06373 -23.15349 -22.30439 -20.01511 -18.46988 -18.03302 -17.77348 -17.56803 -17.35230 -16.65244 -16.27860 -15.69615 -15.33148 -14.97334 -14.75170 -14.38381 -14.25058 -13.74817 -13.60650 -13.09123 -12.84757 -12.72847 -12.56865 -12.47248 -12.21013 -12.20103 -12.12623 -12.07634 -11.94361 -10.95782 -10.83741 -10.72084 -10.44065 -10.31108 -10.16646 -9.92323 -9.70035 -9.59839 -8.95894 -8.62959 -8.22175 -7.34447 -5.81617 -3.18630 0.57016 1.65737 2.18274 2.39187 2.91366 3.38043 3.42244 3.46278 3.46893 4.16185 4.23200 4.28617 4.55879 4.56484 4.70739 4.84856 4.88908 4.90372 4.96408 4.99103 5.06712 5.14409 5.27262 5.36957 5.46689 5.62443 5.67624 5.71307 5.77929 5.92809 6.00872 6.01274 6.20216 6.22233 6.37113 6.52107 6.59750 6.79368 6.81687 7.27181 7.81217 7.94400 7.98833 8.37648 9.14738 9.87372 10.05438 11.36140 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.003287 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.972094 B = 8516.860496 C = 9249.273630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.498 3.502 4 O -0.527 6.527 5 C 0.071 3.929 6 N -0.481 5.481 7 C 0.142 3.858 8 C -0.234 4.234 9 C -0.016 4.016 10 C -0.241 4.241 11 C 0.518 3.482 12 O -0.550 6.550 13 C 0.121 3.879 14 C -0.168 4.168 15 C 0.178 3.822 16 N -0.730 5.730 17 C -0.250 4.250 18 H 0.093 0.907 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.881 3.119 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.276 1.276 25 C -0.180 4.180 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 26.593 -7.546 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.330 5.330 3 C 0.284 3.716 4 O -0.403 6.403 5 C -0.054 4.054 6 N -0.191 5.191 7 C 0.015 3.985 8 C -0.257 4.257 9 C -0.038 4.038 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.432 6.432 13 C 0.019 3.981 14 C -0.208 4.208 15 C 0.066 3.934 16 N -0.370 5.370 17 C -0.380 4.380 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.203 1.203 25 C -0.222 4.222 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.048 25.974 -6.775 28.662 hybrid contribution 1.182 0.657 -0.270 1.379 sum -8.866 26.631 -7.045 28.938 Atomic orbital electron populations 1.21841 0.79627 1.03250 1.02412 1.47913 1.06916 1.05869 1.72322 1.20643 0.88430 0.85417 0.77150 1.90762 1.13585 1.86935 1.48977 1.21889 0.91932 0.84544 1.07046 1.45077 1.38244 1.28444 1.07333 1.21910 0.94047 0.93299 0.89204 1.20627 1.03950 1.01450 0.99634 1.21438 0.94265 0.96126 0.91943 1.22099 1.03631 1.00371 1.00207 1.17168 0.83390 0.84828 0.82550 1.90970 1.59502 1.63144 1.29551 1.22860 0.97677 0.79583 0.97989 1.23963 1.01778 0.97554 0.97485 1.20846 0.89229 0.91444 0.91916 1.42565 1.01187 1.12052 1.81228 1.19078 0.94445 0.86390 1.38048 0.88924 1.24665 0.97117 0.95902 1.01049 1.69695 1.23180 1.12182 1.52676 0.86604 0.84222 0.79701 0.78374 1.20862 1.21521 1.20251 1.24310 0.99893 0.96948 1.01014 0.91975 0.91436 0.89946 0.86196 0.85284 0.82298 0.83695 0.84780 0.83430 0.86801 0.91161 0.89922 0.90507 0.80345 0.92917 0.90428 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 8.85 59.85 0.53 1.09 16 2 N -0.60 -7.51 3.08 -172.89 -0.53 -8.04 16 3 C 0.50 6.89 7.74 -10.99 -0.09 6.80 16 4 O -0.53 -9.82 15.91 5.56 0.09 -9.73 16 5 C 0.07 0.67 4.37 -5.19 -0.02 0.65 16 6 N -0.48 -5.26 2.07 -121.07 -0.25 -5.51 16 7 C 0.14 1.11 10.28 -16.84 -0.17 0.94 16 8 C -0.23 -1.63 10.01 -39.88 -0.40 -2.03 16 9 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 10 C -0.24 -2.66 9.99 -39.38 -0.39 -3.05 16 11 C 0.52 7.22 7.40 -15.45 -0.11 7.11 16 12 O -0.55 -9.76 16.63 4.86 0.08 -9.68 16 13 C 0.12 1.91 4.09 -67.02 -0.27 1.64 16 14 C -0.17 -2.51 7.36 -25.92 -0.19 -2.70 16 15 C 0.18 3.28 4.55 -67.12 -0.31 2.98 16 16 N -0.73 -17.26 5.12 -52.64 -0.27 -17.53 16 17 C -0.25 -7.02 10.45 -15.06 -0.16 -7.18 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 21 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 22 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 25 C -0.18 -2.91 7.32 -25.82 -0.19 -3.10 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 28 H 0.08 0.59 6.35 -51.92 -0.33 0.26 16 29 H 0.12 0.56 7.27 -51.93 -0.38 0.18 16 30 H 0.13 1.22 7.34 -51.93 -0.38 0.84 16 31 H 0.16 0.69 8.04 -52.49 -0.42 0.27 16 32 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.11 2.19 7.23 -51.93 -0.38 1.82 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.08 0.98 6.92 -51.93 -0.36 0.62 16 38 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 39 H 0.36 8.66 5.76 -40.82 -0.24 8.43 16 40 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 41 H 0.08 1.02 6.74 -51.93 -0.35 0.67 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -38.76 348.44 -7.56 -46.31 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.71 Total: 6.72 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.27 Total: 2.79 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.28 Total: -59.57 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.76 -7.56 -46.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999819511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.418 kcal (2) G-P(sol) polarization free energy of solvation -38.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds