Wall clock time and date at job start Fri Apr 10 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 N 1.46503 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.35760 * 119.62110 * 89.99926 * 6 5 3 8 8 C 1.35348 * 120.70322 * 179.97438 * 7 6 5 9 9 C 1.40202 * 119.94632 * 0.02562 * 8 7 6 10 10 C 1.36398 * 119.26550 * 0.02562 * 9 8 7 11 11 C 1.34656 * 119.62648 * 269.73281 * 6 5 3 12 12 O 1.22064 * 119.98547 * 359.97438 * 11 6 5 13 13 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 14 14 C 1.53782 * 113.61652 * 60.00231 * 13 2 1 15 15 C 1.53781 * 87.08260 * 220.01840 * 14 13 2 16 16 N 1.46497 * 113.61305 * 270.79919 * 15 14 13 17 17 C 1.36944 * 119.99791 * 203.46713 * 16 15 14 18 18 H 1.07993 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99762 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00190 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47113 * 89.99658 * 21 19 17 23 23 H 1.48503 * 109.46988 * 209.99850 * 21 19 17 24 24 H 1.48501 * 109.46739 * 329.99844 * 21 19 17 25 25 C 1.53786 * 87.17350 * 25.39213 * 15 14 13 26 26 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 27 27 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 28 28 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 29 29 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 30 30 H 1.08995 * 109.47131 * 60.00147 * 5 3 2 31 31 H 1.08001 * 119.65172 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.03105 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.36897 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.34967 * 180.02562 * 10 9 8 35 35 H 1.09002 * 112.84713 * 191.20024 * 13 2 1 36 36 H 1.09001 * 113.61250 * 105.46657 * 14 13 2 37 37 H 1.08997 * 113.61225 * 334.56498 * 14 13 2 38 38 H 1.09002 * 113.61445 * 139.98212 * 15 14 13 39 39 H 0.96995 * 120.00146 * 23.47603 * 16 15 14 40 40 H 0.97005 * 119.99972 * 180.02562 * 20 19 17 41 41 H 1.08993 * 113.61491 * 89.15923 * 25 15 14 42 42 H 1.09000 * 113.61138 * 220.06261 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3373 3.5858 0.0002 7 6 2.7743 4.0958 -1.1797 8 6 3.6533 5.1248 -1.2046 9 6 4.1219 5.6741 -0.0028 10 6 3.6826 5.1596 1.1816 11 6 2.7648 4.0953 1.1710 12 8 2.3587 3.6295 2.2236 13 6 2.1975 -1.2687 0.0006 14 6 1.8955 -2.1550 -1.2193 15 6 1.9130 -3.3527 -0.2548 16 7 3.2394 -3.9515 -0.0869 17 6 3.3561 -5.2537 0.3206 18 1 2.4704 -5.8392 0.5178 19 6 4.6129 -5.8213 0.4792 20 7 4.7250 -7.0729 0.8704 21 14 6.1450 -4.8087 0.1374 22 1 6.5718 -4.1210 1.3823 23 1 7.2340 -5.7021 -0.3330 24 1 5.8470 -3.7981 -0.9091 25 6 1.5384 -2.3625 0.8606 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5139 29 1 0.7591 2.5298 -0.8908 30 1 0.7584 2.5302 0.8891 31 1 2.4161 3.6767 -2.1084 32 1 3.9934 5.5224 -2.1493 33 1 4.8237 6.4949 -0.0147 34 1 4.0319 5.5697 2.1177 35 1 3.2625 -1.1425 0.1956 36 1 2.6999 -2.1747 -1.9546 37 1 0.9184 -1.9671 -1.6643 38 1 1.1383 -4.0911 -0.4615 39 1 4.0349 -3.4257 -0.2643 40 1 5.6033 -7.4695 0.9816 41 1 0.4636 -2.2314 0.9853 42 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999819511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:26 Heat of formation + Delta-G solvation = -8.487754 kcal Electronic energy + Delta-G solvation = -24860.358299 eV Core-core repulsion = 21227.756320 eV Total energy + Delta-G solvation = -3632.601980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54438 -41.21959 -39.48818 -37.98140 -36.38316 -35.55780 -34.82345 -32.50824 -30.88787 -29.63808 -28.05977 -26.62462 -26.17677 -24.95551 -24.41044 -23.52367 -21.16858 -19.91667 -19.62542 -18.77484 -18.41279 -18.31250 -17.57273 -17.22561 -16.65429 -16.59915 -16.37833 -16.01717 -15.56230 -15.13234 -14.95711 -14.83074 -14.61019 -14.30722 -13.78540 -13.59108 -13.50497 -13.35856 -13.20879 -13.12703 -13.00458 -12.90738 -12.74994 -12.41438 -12.28756 -11.87457 -11.81255 -11.55345 -11.28779 -11.10354 -11.01210 -10.71858 -9.67433 -9.37664 -8.99154 -8.08728 -5.41778 -0.10775 0.91836 1.31074 1.34413 1.37584 1.39514 1.45159 2.01202 2.41016 2.69466 3.21855 3.34205 3.44328 3.63604 3.68112 3.74720 3.76931 3.97584 4.10123 4.16062 4.18334 4.20518 4.30440 4.35632 4.50933 4.66129 4.71984 4.77372 4.91017 4.96819 5.02145 5.04796 5.16330 5.17186 5.23143 5.37680 5.57194 5.64050 5.74412 6.03291 6.17261 6.29848 6.92238 7.00098 7.01264 7.78456 7.94086 9.12496 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.003287 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.972094 B = 8516.860496 C = 9249.273630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.593 5.593 3 C 0.490 3.510 4 O -0.587 6.587 5 C 0.076 3.924 6 N -0.483 5.483 7 C 0.134 3.866 8 C -0.232 4.232 9 C 0.007 3.993 10 C -0.288 4.288 11 C 0.496 3.504 12 O -0.613 6.613 13 C 0.123 3.877 14 C -0.140 4.140 15 C 0.154 3.846 16 N -0.740 5.740 17 C -0.229 4.229 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.979 5.979 21 Si 0.943 3.057 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.258 1.258 25 C -0.166 4.166 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.181 0.819 30 H 0.128 0.872 31 H 0.202 0.798 32 H 0.184 0.816 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.116 0.884 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 29.626 -10.826 33.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.324 5.324 3 C 0.277 3.723 4 O -0.467 6.467 5 C -0.048 4.048 6 N -0.192 5.192 7 C 0.009 3.991 8 C -0.254 4.254 9 C -0.014 4.014 10 C -0.309 4.309 11 C 0.302 3.698 12 O -0.502 6.502 13 C 0.019 3.981 14 C -0.179 4.179 15 C 0.044 3.956 16 N -0.381 5.381 17 C -0.360 4.360 18 H 0.086 0.914 19 C -0.250 4.250 20 N -0.629 5.629 21 Si 0.772 3.228 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.183 1.183 25 C -0.207 4.207 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.198 0.802 30 H 0.146 0.854 31 H 0.219 0.781 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.194 0.806 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.881 29.072 -10.118 32.995 hybrid contribution 1.611 -0.226 0.678 1.762 sum -10.270 28.846 -9.440 32.042 Atomic orbital electron populations 1.22274 0.76202 1.06136 1.03639 1.47947 1.08821 1.04303 1.71375 1.21452 0.88013 0.86955 0.75832 1.90734 1.16340 1.87869 1.51744 1.22105 0.91330 0.81598 1.09794 1.45140 1.38130 1.28333 1.07553 1.22753 0.93794 0.93259 0.89338 1.21206 1.02831 1.00701 1.00666 1.21894 0.92840 0.95600 0.91101 1.22115 1.05510 1.01623 1.01661 1.17646 0.83855 0.85535 0.82796 1.90909 1.62154 1.65432 1.31659 1.22424 0.95944 0.81471 0.98283 1.23798 1.03778 0.94193 0.96146 1.21208 0.86883 0.92843 0.94639 1.42614 1.03449 1.10592 1.81438 1.19099 0.93412 0.87829 1.35672 0.91402 1.25375 1.00232 0.97012 1.02332 1.69845 1.23649 1.14105 1.55320 0.85585 0.80482 0.78438 0.78336 1.21449 1.21514 1.18279 1.24178 1.01899 0.96107 0.98550 0.91644 0.87180 0.88517 0.80210 0.85400 0.78122 0.79866 0.81472 0.84041 0.91122 0.92222 0.85444 0.90117 0.80568 0.93236 0.86538 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 8.85 127.77 1.13 1.76 16 2 N -0.59 -13.37 3.08 -819.28 -2.53 -15.90 16 3 C 0.49 12.74 7.74 87.66 0.68 13.42 16 4 O -0.59 -22.02 15.91 -3.03 -0.05 -22.07 16 5 C 0.08 1.22 4.37 85.63 0.37 1.59 16 6 N -0.48 -9.68 2.07 -655.07 -1.36 -11.04 16 7 C 0.13 1.58 10.28 83.42 0.86 2.44 16 8 C -0.23 -2.28 10.01 22.08 0.22 -2.06 16 9 C 0.01 0.10 10.10 22.32 0.23 0.32 16 10 C -0.29 -6.45 9.99 22.40 0.22 -6.22 16 11 C 0.50 14.17 7.40 84.82 0.63 14.80 16 12 O -0.61 -23.22 16.63 -5.52 -0.09 -23.32 16 13 C 0.12 3.73 4.09 45.58 0.19 3.92 16 14 C -0.14 -3.79 7.36 31.12 0.23 -3.56 16 15 C 0.15 5.50 4.55 45.52 0.21 5.71 16 16 N -0.74 -35.16 5.12 -320.44 -1.64 -36.80 16 17 C -0.23 -13.15 10.45 84.03 0.88 -12.27 16 18 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 19 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 20 N -0.98 -63.54 13.97 21.65 0.30 -63.23 16 21 Si 0.94 47.86 27.74 68.60 1.90 49.76 16 22 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.26 -12.11 6.52 99.48 0.65 -11.46 16 25 C -0.17 -5.19 7.32 31.18 0.23 -4.96 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.11 0.29 6.44 -2.39 -0.02 0.28 16 28 H 0.10 0.82 6.35 -2.38 -0.02 0.80 16 29 H 0.18 0.57 7.27 -2.39 -0.02 0.55 16 30 H 0.13 2.16 7.34 -2.39 -0.02 2.14 16 31 H 0.20 0.55 8.04 -2.91 -0.02 0.53 16 32 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.07 2.80 7.23 -2.39 -0.02 2.78 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.13 2.34 6.92 -2.39 -0.02 2.33 16 38 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 39 H 0.36 17.29 5.76 -92.71 -0.53 16.75 16 40 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 41 H 0.12 2.71 6.74 -2.39 -0.02 2.69 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -93.98 348.44 3.52 -90.46 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.45 Total: 20.27 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.54 Total: 11.88 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.22 Total: -126.98 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.14 Total: -45.39 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.76 kcal Total: -93.98 3.52 -90.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999819511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.971 kcal (2) G-P(sol) polarization free energy of solvation -93.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds