Wall clock time and date at job start Fri Apr 10 2020 17:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35750 * 116.99589 * 2 1 4 4 C 1.39214 * 120.81684 * 0.02562 * 3 2 1 5 5 C 1.38311 * 119.28823 * 179.97438 * 4 3 2 6 6 N 1.31608 * 120.97144 * 359.72353 * 5 4 3 7 7 C 1.32802 * 121.77958 * 0.56840 * 6 5 4 8 8 C 1.48188 * 119.69789 * 179.70791 * 7 6 5 9 9 O 1.21511 * 119.99868 * 202.51688 * 8 7 6 10 10 N 1.34771 * 119.99722 * 22.51367 * 8 7 6 11 11 C 1.46930 * 120.63380 * 359.70804 * 10 8 7 12 12 C 1.53192 * 108.77637 * 126.41258 * 11 10 8 13 13 C 1.53042 * 109.31434 * 54.63429 * 12 11 10 14 14 C 1.53044 * 109.53669 * 298.63716 * 13 12 11 15 15 H 1.09000 * 109.49709 * 301.37576 * 14 13 12 16 16 N 1.46504 * 109.49486 * 181.31402 * 14 13 12 17 17 C 1.36937 * 119.99802 * 154.99750 * 16 14 13 18 18 H 1.07999 * 120.00224 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99950 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99762 * 359.73474 * 19 17 16 21 21 Si 1.86796 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46846 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47093 * 120.00376 * 21 19 17 24 24 H 1.48499 * 109.47058 * 240.00571 * 21 19 17 25 25 C 1.46926 * 120.63090 * 179.72921 * 10 8 7 26 26 C 1.39101 * 120.60112 * 359.43499 * 7 6 5 27 27 H 1.08995 * 109.47508 * 299.99792 * 1 2 3 28 28 H 1.09000 * 109.47216 * 60.00421 * 1 2 3 29 29 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.35211 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.51002 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.58787 * 6.62856 * 11 10 8 33 33 H 1.08999 * 109.58711 * 246.20021 * 11 10 8 34 34 H 1.08999 * 109.49723 * 294.68865 * 12 11 10 35 35 H 1.08995 * 109.49959 * 174.58533 * 12 11 10 36 36 H 1.09003 * 109.46000 * 178.61620 * 13 12 11 37 37 H 1.08998 * 109.44801 * 58.64613 * 13 12 11 38 38 H 0.97001 * 119.99971 * 334.99962 * 16 14 13 39 39 H 0.97002 * 119.99384 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.58887 * 113.80048 * 25 10 8 41 41 H 1.08998 * 109.58374 * 353.37730 * 25 10 8 42 42 H 1.08005 * 120.50284 * 180.25203 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3878 0.0005 5 6 1.9641 3.6030 0.0011 6 7 3.2790 3.6592 0.0065 7 6 4.0260 2.5612 0.0005 8 6 5.5032 2.6782 0.0005 9 8 6.1855 1.7593 -0.4076 10 7 6.0900 3.8040 0.4530 11 6 5.2782 4.9262 0.9435 12 6 5.7535 5.3004 2.3509 13 6 7.2579 5.5794 2.3197 14 6 8.0033 4.3179 1.8776 15 1 7.7796 3.5031 2.5661 16 7 9.4453 4.5766 1.8782 17 6 10.3269 3.5393 2.0261 18 1 9.9592 2.5304 2.1418 19 6 11.6933 3.7843 2.0261 20 7 12.1415 5.0130 1.8788 21 14 12.8959 2.3692 2.2271 22 1 12.1437 1.0964 2.3667 23 1 13.7767 2.2948 1.0339 24 1 13.7233 2.5912 3.4401 25 6 7.5535 3.9327 0.4648 26 6 3.4344 1.3023 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2242 2.3532 0.0014 31 1 1.3923 4.5192 0.0019 32 1 4.2296 4.6308 0.9785 33 1 5.3971 5.7814 0.2783 34 1 5.5505 4.4761 3.0346 35 1 5.2251 6.1920 2.6883 36 1 7.5941 5.8698 3.3151 37 1 7.4627 6.3871 1.6171 38 1 9.7755 5.4827 1.7739 39 1 13.0963 5.1842 1.8792 40 1 7.8580 4.7069 -0.2395 41 1 8.0062 2.9818 0.1838 42 1 4.0434 0.4103 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999882641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:31 Heat of formation + Delta-G solvation = -3.740153 kcal Electronic energy + Delta-G solvation = -24887.370105 eV Core-core repulsion = 21254.973997 eV Total energy + Delta-G solvation = -3632.396108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21314 -39.74645 -38.35772 -37.19950 -34.42815 -32.43132 -31.93430 -31.60989 -30.99694 -28.24754 -28.04273 -25.68885 -24.05580 -23.64419 -23.39090 -21.74697 -20.66160 -19.42583 -18.10374 -17.63508 -17.03075 -16.58049 -16.32527 -15.88456 -15.75153 -15.26848 -14.95924 -14.39281 -14.35859 -14.06801 -13.83476 -13.61296 -13.42429 -13.29185 -12.82481 -12.60013 -12.29761 -12.24981 -11.99170 -11.78537 -11.27885 -10.97469 -10.78848 -10.71571 -10.50777 -10.13291 -10.07794 -9.76366 -9.68362 -9.57272 -9.35579 -9.05388 -8.96684 -8.25023 -6.95246 -5.74744 -3.04165 0.42711 0.93041 2.55994 2.76240 3.24169 3.47628 3.53892 3.56511 3.59339 4.00140 4.21371 4.42985 4.60715 4.62822 4.63651 4.76699 4.81787 4.97330 5.23395 5.28537 5.32596 5.39692 5.49986 5.55276 5.66046 5.75806 5.85289 5.89837 6.02335 6.19063 6.25635 6.29123 6.36964 6.47790 6.57987 6.74924 6.85441 6.89393 7.08676 7.45448 7.72543 7.76473 8.34687 8.43893 9.55422 10.09889 10.45433 11.47666 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.003184 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.647986 B = 8792.648584 C = 9668.499184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.165 3.835 4 C -0.248 4.248 5 C 0.130 3.870 6 N -0.472 5.472 7 C 0.127 3.873 8 C 0.562 3.438 9 O -0.533 6.533 10 N -0.580 5.580 11 C 0.076 3.924 12 C -0.131 4.131 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.090 3.910 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.135 0.865 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.533 -2.427 -2.690 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.111 3.889 4 C -0.269 4.269 5 C -0.028 4.028 6 N -0.188 5.188 7 C -0.009 4.009 8 C 0.347 3.653 9 O -0.409 6.409 10 N -0.311 5.311 11 C -0.046 4.046 12 C -0.170 4.170 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.359 5.359 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.035 4.035 26 C -0.168 4.168 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -27.517 -2.516 -2.867 27.780 hybrid contribution 0.126 -0.998 0.023 1.006 sum -27.391 -3.514 -2.845 27.762 Atomic orbital electron populations 1.23174 0.77553 1.04603 1.01706 1.86113 1.22024 1.25997 1.87690 1.19212 0.92090 0.84858 0.92730 1.22354 1.01703 0.93160 1.09704 1.22737 0.90056 0.97287 0.92752 1.67715 1.06729 1.30060 1.14280 1.21160 0.94715 0.88531 0.96482 1.17823 0.85353 0.82971 0.79194 1.90810 1.63482 1.38750 1.47903 1.48131 1.08248 1.14737 1.59957 1.22807 0.98748 0.88910 0.94149 1.21930 0.96801 1.01208 0.97083 1.21845 0.93938 0.98856 1.01884 1.20484 0.85484 0.95272 0.92954 0.93164 1.42396 0.98636 1.08046 1.86789 1.19332 0.87271 0.88761 1.41765 0.90970 1.24750 0.96899 0.96462 1.02698 1.69678 1.13126 1.18160 1.57110 0.86115 0.81323 0.81585 0.77218 1.20409 1.21815 1.21889 1.22877 0.76184 1.03380 1.01013 1.21389 0.91984 0.99723 1.03664 0.92190 0.92209 0.87692 0.83972 0.81648 0.84838 0.91739 0.92123 0.91218 0.91641 0.92080 0.78061 0.93554 0.91726 0.89093 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.81 10.51 -18.96 -0.20 -3.00 16 3 C 0.16 1.66 6.73 -38.85 -0.26 1.40 16 4 C -0.25 -1.86 9.12 -39.19 -0.36 -2.22 16 5 C 0.13 1.06 11.17 -17.62 -0.20 0.86 16 6 N -0.47 -5.48 6.39 -9.87 -0.06 -5.54 16 7 C 0.13 1.78 6.44 -83.04 -0.53 1.25 16 8 C 0.56 9.89 7.61 -12.18 -0.09 9.80 16 9 O -0.53 -11.16 15.96 5.36 0.09 -11.08 16 10 N -0.58 -9.88 2.97 -173.75 -0.52 -10.40 16 11 C 0.08 1.04 5.99 -3.71 -0.02 1.02 16 12 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 13 C -0.13 -2.12 5.35 -26.69 -0.14 -2.26 16 14 C 0.17 3.51 2.92 -67.81 -0.20 3.31 16 15 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.72 -18.31 5.12 -53.30 -0.27 -18.58 16 17 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 18 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 21 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.09 1.80 6.02 -3.71 -0.02 1.77 16 26 C -0.15 -1.86 9.59 -38.89 -0.37 -2.23 16 27 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 28 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.60 6.45 -52.49 -0.34 0.26 16 31 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.14 1.66 4.00 -77.53 -0.31 1.35 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.39 10.30 7.80 -40.82 -0.32 9.98 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.09 2.08 7.00 -51.93 -0.36 1.72 16 42 H 0.15 2.05 7.81 -52.48 -0.41 1.64 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -34.12 344.92 -7.57 -41.69 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.89 Total: 7.02 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.61 Total: 4.43 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.13 Total: -62.26 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.11 Total: -14.08 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.12 -7.57 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999882641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.953 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds