Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34772 * 120.00467 * 2 1 4 4 O 1.21554 * 120.00242 * 183.41585 * 3 2 1 5 5 C 1.47828 * 119.99896 * 3.41688 * 3 2 1 6 6 N 1.32861 * 119.78424 * 355.13412 * 5 3 2 7 7 C 1.31378 * 121.69963 * 179.74960 * 6 5 3 8 8 C 1.38769 * 121.06166 * 0.53857 * 7 6 5 9 9 C 1.38296 * 119.44584 * 359.47136 * 8 7 6 10 10 C 1.39349 * 118.44382 * 0.25352 * 9 8 7 11 11 O 1.35644 * 120.54049 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99700 * 179.97438 * 2 1 3 13 13 C 1.53034 * 109.45558 * 60.03277 * 12 2 1 14 14 C 1.53199 * 109.31120 * 178.59796 * 13 12 2 15 15 N 1.46924 * 108.76395 * 54.65534 * 14 13 12 16 16 C 1.36932 * 120.63293 * 126.40687 * 15 14 13 17 17 H 1.08002 * 119.99824 * 329.42399 * 16 15 14 18 18 C 1.38812 * 120.00280 * 149.42118 * 16 15 14 19 19 N 1.31621 * 119.99914 * 166.66609 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 346.67081 * 18 16 15 21 21 H 1.48496 * 109.47616 * 87.39617 * 20 18 16 22 22 H 1.48499 * 109.47303 * 207.40242 * 20 18 16 23 23 H 1.48510 * 109.46935 * 327.39983 * 20 18 16 24 24 C 1.46933 * 118.73706 * 306.38381 * 15 14 13 25 25 C 1.53031 * 109.46205 * 299.97497 * 12 2 1 26 26 H 1.09000 * 109.47435 * 83.82813 * 1 2 3 27 27 H 1.09004 * 109.47838 * 203.83024 * 1 2 3 28 28 H 1.09004 * 109.47050 * 323.83335 * 1 2 3 29 29 H 1.07994 * 119.46979 * 180.28614 * 7 6 5 30 30 H 1.08000 * 120.27094 * 179.75359 * 8 7 6 31 31 H 1.07998 * 120.77803 * 180.27720 * 9 8 7 32 32 H 0.96694 * 114.00661 * 90.00109 * 11 10 9 33 33 H 1.09004 * 109.45852 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.50332 * 298.56026 * 13 12 2 35 35 H 1.08996 * 109.50490 * 58.66142 * 13 12 2 36 36 H 1.08995 * 109.59660 * 294.86892 * 14 13 12 37 37 H 1.09002 * 109.70344 * 174.50229 * 14 13 12 38 38 H 0.97000 * 119.99569 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.58437 * 293.82056 * 24 15 14 40 40 H 1.09003 * 109.70061 * 173.46492 * 24 15 14 41 41 H 1.09004 * 109.50154 * 301.33553 * 25 12 2 42 42 H 1.08999 * 109.50058 * 61.40020 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3528 1.1680 -0.0627 5 6 1.4018 2.4462 0.0763 6 7 0.0735 2.4453 0.0470 7 6 -0.6194 3.5593 0.1172 8 6 0.0129 4.7908 0.2144 9 6 1.3943 4.8449 0.2488 10 6 2.1074 3.6498 0.1785 11 8 3.4635 3.6534 0.2082 12 6 2.1974 -1.2688 0.0006 13 6 1.8280 -2.0712 -1.2491 14 6 2.6219 -3.3814 -1.2630 15 7 2.3847 -4.0911 0.0014 16 6 1.9517 -5.3901 0.0018 17 1 1.3298 -5.7523 -0.8035 18 6 2.3120 -6.2416 1.0372 19 7 1.6968 -7.3958 1.1844 20 14 3.6699 -5.7493 2.2218 21 1 3.0918 -4.9543 3.3348 22 1 4.3163 -6.9693 2.7685 23 1 4.6813 -4.9327 1.5036 24 6 2.6215 -3.3805 1.2655 25 6 1.8280 -2.0703 1.2508 26 1 -0.3634 0.1105 -1.0217 27 1 -0.3635 -0.9400 0.4152 28 1 -0.3633 0.8297 0.6065 29 1 -1.6982 3.5163 0.0948 30 1 -0.5692 5.6989 0.2674 31 1 1.9085 5.7913 0.3287 32 1 3.8377 3.5913 1.0976 33 1 3.2690 -1.0695 0.0000 34 1 0.7607 -2.2925 -1.2373 35 1 2.0697 -1.4903 -2.1392 36 1 3.6849 -3.1636 -1.3660 37 1 2.2933 -4.0014 -2.0972 38 1 1.9484 -7.9906 1.9081 39 1 3.6846 -3.1628 1.3687 40 1 2.2922 -3.9979 2.1013 41 1 2.0696 -1.4886 2.1405 42 1 0.7606 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005303463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = 13.702114 kcal Electronic energy + Delta-G solvation = -25544.708494 eV Core-core repulsion = 21913.068739 eV Total energy + Delta-G solvation = -3631.639755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18920 -39.39861 -37.75352 -37.38673 -35.16321 -33.10035 -32.14726 -30.82043 -30.40289 -30.05665 -26.79290 -25.66307 -24.31029 -23.63484 -22.83183 -21.93067 -20.24087 -19.11010 -18.72448 -17.59496 -17.18210 -16.74289 -16.17453 -16.01072 -15.40108 -15.18392 -14.83085 -14.15808 -14.09175 -13.77973 -13.76646 -13.62072 -13.10221 -13.03186 -12.91942 -12.72495 -12.28626 -12.23237 -11.91693 -11.75441 -11.38720 -10.89138 -10.81985 -10.50332 -10.29270 -10.20056 -10.07467 -9.97497 -9.75706 -9.46390 -9.32635 -9.18788 -8.63337 -8.31834 -6.92065 -5.91403 -3.33526 0.26972 0.69483 2.63627 2.98702 3.32219 3.44659 3.49931 3.52849 3.72030 3.93934 4.37380 4.38073 4.54035 4.55942 4.92562 4.99664 5.06109 5.23861 5.32808 5.43705 5.52075 5.53381 5.55097 5.72936 5.81745 5.85852 5.94516 6.07447 6.14071 6.21563 6.32818 6.38919 6.44922 6.60900 6.65831 6.70424 6.82420 6.93989 7.21894 7.36913 7.55017 8.01560 8.22237 8.36343 8.95891 9.73567 10.12330 11.24807 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003478 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.576482 B = 8047.806507 C = 8351.703106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.586 5.586 3 C 0.560 3.440 4 O -0.525 6.525 5 C 0.055 3.945 6 N -0.431 5.431 7 C 0.080 3.920 8 C -0.136 4.136 9 C -0.113 4.113 10 C 0.120 3.880 11 O -0.469 6.469 12 C 0.143 3.857 13 C -0.139 4.139 14 C 0.152 3.848 15 N -0.608 5.608 16 C -0.258 4.258 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.915 5.915 20 Si 0.893 3.107 21 H -0.288 1.288 22 H -0.305 1.305 23 H -0.270 1.270 24 C 0.123 3.877 25 C -0.138 4.138 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.166 0.834 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.397 0.603 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 26.451 -0.090 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.317 5.317 3 C 0.346 3.654 4 O -0.401 6.401 5 C -0.083 4.083 6 N -0.145 5.145 7 C -0.079 4.079 8 C -0.156 4.156 9 C -0.139 4.139 10 C 0.071 3.929 11 O -0.279 6.279 12 C 0.041 3.959 13 C -0.179 4.179 14 C 0.025 3.975 15 N -0.332 5.332 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.724 3.276 21 H -0.216 1.216 22 H -0.233 1.233 23 H -0.195 1.195 24 C -0.003 4.003 25 C -0.179 4.179 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.184 0.816 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.256 0.744 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.488 25.473 -0.726 25.875 hybrid contribution 0.966 1.047 1.282 1.916 sum -3.521 26.519 0.555 26.758 Atomic orbital electron populations 1.22451 0.78585 1.03786 1.02657 1.47988 1.07981 1.05390 1.70341 1.17765 0.86663 0.82818 0.78177 1.90814 1.12631 1.86475 1.50154 1.21904 0.90163 0.94194 1.02028 1.68217 1.06282 1.29779 1.10182 1.23043 1.01013 0.87588 0.96268 1.22308 0.94528 1.00046 0.98698 1.22013 0.94563 0.98498 0.98832 1.19399 0.84865 0.91505 0.97148 1.84782 1.14032 1.95456 1.33645 1.21198 0.97366 0.81172 0.96149 1.22356 1.01808 0.97644 0.96055 1.20898 0.96046 0.90985 0.89532 1.44373 1.78509 1.10952 0.99326 1.18937 1.25302 0.84263 1.10164 0.89658 1.25358 0.98334 0.95147 0.98835 1.69768 1.42274 1.10921 1.32896 0.86882 0.83742 0.76127 0.80835 1.21572 1.23323 1.19478 1.21430 0.96480 0.91715 0.90637 1.22380 1.02005 0.97451 0.96020 0.93018 0.91695 0.87356 0.81648 0.83946 0.83602 0.74439 0.88618 0.91542 0.92493 0.95680 0.91437 0.92754 0.95370 0.90514 0.92687 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 8.46 59.84 0.51 1.39 16 2 N -0.59 -9.10 2.76 -175.01 -0.48 -9.59 16 3 C 0.56 8.93 7.65 -12.34 -0.09 8.83 16 4 O -0.52 -9.75 14.49 -16.58 -0.24 -9.99 16 5 C 0.06 0.70 6.66 -82.88 -0.55 0.15 16 6 N -0.43 -4.62 5.95 -9.71 -0.06 -4.68 16 7 C 0.08 0.58 11.17 -17.55 -0.20 0.39 16 8 C -0.14 -0.80 10.10 -39.36 -0.40 -1.19 16 9 C -0.11 -0.83 10.12 -39.15 -0.40 -1.23 16 10 C 0.12 1.30 6.74 -38.55 -0.26 1.04 16 11 O -0.47 -5.33 11.59 -40.53 -0.47 -5.80 16 12 C 0.14 2.51 2.47 -67.89 -0.17 2.35 16 13 C -0.14 -2.43 5.34 -26.61 -0.14 -2.57 16 14 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 15 N -0.61 -14.67 2.76 -172.31 -0.48 -15.14 16 16 C -0.26 -7.28 10.07 -15.06 -0.15 -7.43 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 18 C 0.02 0.64 5.34 -17.43 -0.09 0.54 16 19 N -0.92 -28.31 13.97 55.49 0.78 -27.54 16 20 Si 0.89 22.89 24.23 -169.99 -4.12 18.77 16 21 H -0.29 -7.06 6.45 56.52 0.36 -6.69 16 22 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 23 H -0.27 -6.83 6.49 56.52 0.37 -6.47 16 24 C 0.12 2.76 4.14 -3.71 -0.02 2.74 16 25 C -0.14 -2.56 5.32 -26.62 -0.14 -2.70 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 28 H 0.11 1.28 5.06 -55.99 -0.28 0.99 16 29 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.40 2.93 9.06 45.56 0.41 3.34 16 33 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 34 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.03 0.64 6.90 -51.93 -0.36 0.28 16 40 H 0.08 1.85 4.28 -51.93 -0.22 1.63 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -34.95 330.11 -7.12 -42.07 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.90 Total: 1.56 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.13 Total: 5.37 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.24 Total: -56.95 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.71 Total: -15.80 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.12 Total: 18.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.95 -7.12 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005303463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.769 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds