Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34772 * 120.00467 * 2 1 4 4 O 1.21554 * 120.00242 * 183.41585 * 3 2 1 5 5 C 1.47828 * 119.99896 * 3.41688 * 3 2 1 6 6 N 1.32861 * 119.78424 * 355.13412 * 5 3 2 7 7 C 1.31378 * 121.69963 * 179.74960 * 6 5 3 8 8 C 1.38769 * 121.06166 * 0.53857 * 7 6 5 9 9 C 1.38296 * 119.44584 * 359.47136 * 8 7 6 10 10 C 1.39349 * 118.44382 * 0.25352 * 9 8 7 11 11 O 1.35644 * 120.54049 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99700 * 179.97438 * 2 1 3 13 13 C 1.53034 * 109.45558 * 60.03277 * 12 2 1 14 14 C 1.53199 * 109.31120 * 178.59796 * 13 12 2 15 15 N 1.46924 * 108.76395 * 54.65534 * 14 13 12 16 16 C 1.36932 * 120.63293 * 126.40687 * 15 14 13 17 17 H 1.08002 * 119.99824 * 329.42399 * 16 15 14 18 18 C 1.38812 * 120.00280 * 149.42118 * 16 15 14 19 19 N 1.31621 * 119.99914 * 166.66609 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 346.67081 * 18 16 15 21 21 H 1.48496 * 109.47616 * 87.39617 * 20 18 16 22 22 H 1.48499 * 109.47303 * 207.40242 * 20 18 16 23 23 H 1.48510 * 109.46935 * 327.39983 * 20 18 16 24 24 C 1.46933 * 118.73706 * 306.38381 * 15 14 13 25 25 C 1.53031 * 109.46205 * 299.97497 * 12 2 1 26 26 H 1.09000 * 109.47435 * 83.82813 * 1 2 3 27 27 H 1.09004 * 109.47838 * 203.83024 * 1 2 3 28 28 H 1.09004 * 109.47050 * 323.83335 * 1 2 3 29 29 H 1.07994 * 119.46979 * 180.28614 * 7 6 5 30 30 H 1.08000 * 120.27094 * 179.75359 * 8 7 6 31 31 H 1.07998 * 120.77803 * 180.27720 * 9 8 7 32 32 H 0.96694 * 114.00661 * 90.00109 * 11 10 9 33 33 H 1.09004 * 109.45852 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.50332 * 298.56026 * 13 12 2 35 35 H 1.08996 * 109.50490 * 58.66142 * 13 12 2 36 36 H 1.08995 * 109.59660 * 294.86892 * 14 13 12 37 37 H 1.09002 * 109.70344 * 174.50229 * 14 13 12 38 38 H 0.97000 * 119.99569 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.58437 * 293.82056 * 24 15 14 40 40 H 1.09003 * 109.70061 * 173.46492 * 24 15 14 41 41 H 1.09004 * 109.50154 * 301.33553 * 25 12 2 42 42 H 1.08999 * 109.50058 * 61.40020 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3528 1.1680 -0.0627 5 6 1.4018 2.4462 0.0763 6 7 0.0735 2.4453 0.0470 7 6 -0.6194 3.5593 0.1172 8 6 0.0129 4.7908 0.2144 9 6 1.3943 4.8449 0.2488 10 6 2.1074 3.6498 0.1785 11 8 3.4635 3.6534 0.2082 12 6 2.1974 -1.2688 0.0006 13 6 1.8280 -2.0712 -1.2491 14 6 2.6219 -3.3814 -1.2630 15 7 2.3847 -4.0911 0.0014 16 6 1.9517 -5.3901 0.0018 17 1 1.3298 -5.7523 -0.8035 18 6 2.3120 -6.2416 1.0372 19 7 1.6968 -7.3958 1.1844 20 14 3.6699 -5.7493 2.2218 21 1 3.0918 -4.9543 3.3348 22 1 4.3163 -6.9693 2.7685 23 1 4.6813 -4.9327 1.5036 24 6 2.6215 -3.3805 1.2655 25 6 1.8280 -2.0703 1.2508 26 1 -0.3634 0.1105 -1.0217 27 1 -0.3635 -0.9400 0.4152 28 1 -0.3633 0.8297 0.6065 29 1 -1.6982 3.5163 0.0948 30 1 -0.5692 5.6989 0.2674 31 1 1.9085 5.7913 0.3287 32 1 3.8377 3.5913 1.0976 33 1 3.2690 -1.0695 0.0000 34 1 0.7607 -2.2925 -1.2373 35 1 2.0697 -1.4903 -2.1392 36 1 3.6849 -3.1636 -1.3660 37 1 2.2933 -4.0014 -2.0972 38 1 1.9484 -7.9906 1.9081 39 1 3.6846 -3.1628 1.3687 40 1 2.2922 -3.9979 2.1013 41 1 2.0696 -1.4886 2.1405 42 1 0.7606 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005303463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = -11.178268 kcal Electronic energy + Delta-G solvation = -25545.787388 eV Core-core repulsion = 21913.068739 eV Total energy + Delta-G solvation = -3632.718649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03144 -40.54590 -39.07344 -38.33631 -36.58448 -34.49873 -33.44861 -32.10496 -32.04015 -31.19610 -27.93787 -27.15319 -25.49782 -24.53907 -24.31718 -23.45637 -21.52152 -20.56397 -19.46691 -18.85831 -18.52630 -17.95830 -17.43966 -17.02674 -16.71131 -16.30594 -16.01407 -15.84891 -15.43144 -15.12903 -14.76655 -14.65826 -14.54820 -14.37472 -14.14594 -13.91406 -13.76171 -13.66727 -13.48356 -13.01485 -12.68189 -12.53529 -12.20605 -12.19355 -11.99451 -11.78552 -11.48340 -11.39898 -11.25129 -10.86067 -10.76460 -10.12004 -9.98532 -9.53134 -8.94765 -8.16905 -5.55900 -0.44665 0.11604 1.27130 1.39922 1.48553 1.69540 1.87475 2.39244 2.69232 2.99085 3.07837 3.17491 3.26652 3.62401 3.77508 3.90371 3.91790 4.01910 4.16410 4.25503 4.34413 4.39036 4.46250 4.51581 4.59016 4.66592 4.79850 4.83667 4.88430 4.97958 4.99814 5.03277 5.04595 5.08585 5.19720 5.37834 5.50669 5.66818 5.87040 6.12270 6.34271 6.60001 6.72729 6.88243 7.08395 7.57785 8.00134 9.02935 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003478 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.576482 B = 8047.806507 C = 8351.703106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.589 5.589 3 C 0.554 3.446 4 O -0.563 6.563 5 C 0.020 3.980 6 N -0.449 5.449 7 C 0.079 3.921 8 C -0.111 4.111 9 C -0.110 4.110 10 C 0.106 3.894 11 O -0.490 6.490 12 C 0.150 3.850 13 C -0.124 4.124 14 C 0.148 3.852 15 N -0.620 5.620 16 C -0.247 4.247 17 H 0.056 0.944 18 C -0.033 4.033 19 N -0.960 5.960 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.311 1.311 23 H -0.266 1.266 24 C 0.120 3.880 25 C -0.126 4.126 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.201 0.799 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.262 0.738 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 30.444 0.367 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.319 5.319 3 C 0.342 3.658 4 O -0.442 6.442 5 C -0.116 4.116 6 N -0.162 5.162 7 C -0.081 4.081 8 C -0.131 4.131 9 C -0.136 4.136 10 C 0.057 3.943 11 O -0.302 6.302 12 C 0.047 3.953 13 C -0.164 4.164 14 C 0.023 3.977 15 N -0.345 5.345 16 C -0.377 4.377 17 H 0.073 0.927 18 C -0.228 4.228 19 N -0.607 5.607 20 Si 0.781 3.219 21 H -0.196 1.196 22 H -0.240 1.240 23 H -0.190 1.190 24 C -0.006 4.006 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.218 0.782 30 H 0.204 0.796 31 H 0.190 0.810 32 H 0.269 0.731 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.656 29.514 -0.273 30.052 hybrid contribution 1.211 -0.034 1.057 1.607 sum -4.446 29.480 0.783 29.824 Atomic orbital electron populations 1.22567 0.76959 1.04147 1.03276 1.47964 1.08820 1.04581 1.70509 1.18333 0.86522 0.83898 0.77004 1.90774 1.14330 1.87217 1.51887 1.21461 0.91161 0.92975 1.05988 1.68017 1.05376 1.31854 1.10986 1.23721 1.02470 0.87197 0.94744 1.22810 0.94014 1.01170 0.95064 1.22332 0.95331 0.98073 0.97889 1.19680 0.84670 0.92254 0.97658 1.84731 1.14914 1.95547 1.35011 1.20894 0.96750 0.82225 0.95443 1.22166 1.01183 0.96150 0.96893 1.21031 0.96840 0.91955 0.87899 1.44479 1.78691 1.10009 1.01289 1.18873 1.23899 0.86069 1.08811 0.92668 1.25967 1.00480 0.95282 1.01063 1.69896 1.44097 1.12430 1.34249 0.85915 0.80903 0.75659 0.79419 1.19644 1.23951 1.19044 1.21432 0.97069 0.92960 0.89124 1.22193 1.01290 0.95728 0.97332 0.92570 0.92216 0.85803 0.78215 0.79579 0.80985 0.73126 0.90373 0.91459 0.91057 0.95150 0.91673 0.92860 0.95206 0.92257 0.91133 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 8.46 127.77 1.08 2.85 16 2 N -0.59 -17.83 2.76 -825.89 -2.28 -20.11 16 3 C 0.55 17.54 7.65 86.78 0.66 18.20 16 4 O -0.56 -21.28 14.49 17.05 0.25 -21.03 16 5 C 0.02 0.49 6.66 41.93 0.28 0.76 16 6 N -0.45 -8.48 5.95 -184.63 -1.10 -9.58 16 7 C 0.08 0.80 11.17 84.89 0.95 1.75 16 8 C -0.11 -0.73 10.10 22.41 0.23 -0.50 16 9 C -0.11 -1.22 10.12 22.55 0.23 -0.99 16 10 C 0.11 2.14 6.74 22.94 0.15 2.30 16 11 O -0.49 -10.94 11.59 -68.64 -0.80 -11.73 16 12 C 0.15 5.18 2.47 45.01 0.11 5.30 16 13 C -0.12 -4.27 5.34 30.67 0.16 -4.11 16 14 C 0.15 6.04 6.52 86.37 0.56 6.60 16 15 N -0.62 -30.06 2.76 -699.07 -1.93 -31.99 16 16 C -0.25 -14.23 10.07 84.03 0.85 -13.39 16 17 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 18 C -0.03 -1.98 5.34 84.86 0.45 -1.53 16 19 N -0.96 -61.05 13.97 21.65 0.30 -60.75 16 20 Si 0.95 47.86 24.23 68.60 1.66 49.52 16 21 H -0.27 -12.67 6.45 99.48 0.64 -12.03 16 22 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.27 -13.03 6.49 99.48 0.65 -12.39 16 24 C 0.12 5.27 4.14 86.36 0.36 5.63 16 25 C -0.13 -4.53 5.32 30.67 0.16 -4.37 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.50 6.47 -2.38 -0.02 1.49 16 28 H 0.12 2.68 5.06 -10.41 -0.05 2.63 16 29 H 0.20 0.55 8.06 -2.91 -0.02 0.52 16 30 H 0.19 -0.34 8.06 -2.91 -0.02 -0.37 16 31 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.41 6.05 9.06 -74.06 -0.67 5.38 16 33 H 0.08 3.02 6.90 -2.38 -0.02 3.00 16 34 H 0.07 2.31 7.72 -2.39 -0.02 2.29 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 2.64 7.93 -2.39 -0.02 2.63 16 38 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.03 1.32 6.90 -2.39 -0.02 1.30 16 40 H 0.06 2.82 4.28 -2.39 -0.01 2.81 16 41 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.07 2.54 6.72 -2.39 -0.02 2.52 16 Total: -1.00 -78.56 330.11 2.56 -76.00 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.22 Total: 11.18 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 6.24 Total: 18.50 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.01 Total: -122.43 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.55 Total: -32.77 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.66 Total: 49.52 kcal Total: -78.56 2.56 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005303463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.817 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds