Wall clock time and date at job start Fri Apr 10 2020 17:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35675 * 116.99934 * 2 1 4 4 C 1.38922 * 119.68415 * 180.25655 * 3 2 1 5 5 C 1.38376 * 119.11015 * 180.31457 * 4 3 2 6 6 C 1.50697 * 120.75897 * 179.71261 * 5 4 3 7 7 C 1.50711 * 109.46928 * 269.72065 * 6 5 4 8 8 O 1.21278 * 119.99529 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.85202 * 336.19185 * 10 9 7 12 12 C 1.53777 * 113.68901 * 107.46624 * 10 9 7 13 13 C 1.53785 * 87.08241 * 139.98818 * 12 10 9 14 14 H 1.09002 * 113.61570 * 220.01842 * 13 12 10 15 15 N 1.46500 * 113.68813 * 89.12417 * 13 12 10 16 16 C 1.36936 * 119.99618 * 105.94148 * 15 13 12 17 17 H 1.07990 * 120.00427 * 359.97438 * 16 15 13 18 18 C 1.38824 * 119.99622 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99593 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99988 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46812 * 90.00369 * 20 18 16 22 22 H 1.48502 * 109.47126 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47366 * 330.00666 * 20 18 16 24 24 C 1.53781 * 87.08241 * 334.56547 * 13 12 10 25 25 C 1.38832 * 118.48593 * 359.43605 * 5 4 3 26 26 C 1.38041 * 119.29005 * 0.27402 * 25 5 4 27 27 N 1.31968 * 120.83279 * 0.02562 * 26 25 5 28 28 H 1.09000 * 109.47265 * 60.00256 * 1 2 3 29 29 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46853 * 300.00463 * 1 2 3 31 31 H 1.07997 * 120.44681 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47751 * 149.72033 * 6 5 4 33 33 H 1.08998 * 109.47648 * 29.71649 * 6 5 4 34 34 H 0.97001 * 119.99504 * 359.97438 * 9 7 6 35 35 H 1.08999 * 113.61947 * 25.44244 * 12 10 9 36 36 H 1.08997 * 113.61348 * 254.53459 * 12 10 9 37 37 H 0.96998 * 120.00149 * 285.93056 * 15 13 12 38 38 H 0.96996 * 119.99509 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.61578 * 139.97748 * 24 13 12 40 40 H 1.09001 * 113.61682 * 270.80327 * 24 13 12 41 41 H 1.08003 * 120.35453 * 180.25248 * 25 5 4 42 42 H 1.07999 * 119.58583 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0054 5 6 4.0485 2.5131 0.0013 6 6 5.5512 2.6269 0.0023 7 6 6.0512 2.6643 1.4235 8 8 5.2646 2.6048 2.3447 9 7 7.3724 2.7638 1.6707 10 6 7.8583 2.8006 3.0522 11 1 7.1041 3.1506 3.7570 12 6 8.5615 1.5065 3.4946 13 6 9.5793 2.4012 4.2216 14 1 10.6078 2.0500 4.1376 15 7 9.1996 2.7256 5.5989 16 6 9.8454 2.1251 6.6465 17 1 10.6341 1.4121 6.4576 18 6 9.4859 2.4329 7.9516 19 7 10.1063 1.8553 8.9586 20 14 8.1221 3.6667 8.2785 21 1 6.8195 2.9571 8.3505 22 1 8.3799 4.3599 9.5663 23 1 8.0824 4.6638 7.1787 24 6 9.2189 3.5002 3.2082 25 6 3.2505 3.6491 0.0012 26 6 1.8771 3.5097 0.0003 27 7 1.3186 2.3140 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0229 0.3696 -0.0100 32 1 5.8467 3.5420 -0.5110 33 1 5.9811 1.7672 -0.5116 34 1 8.0014 2.8109 0.9338 35 1 8.9906 0.9386 2.6691 36 1 7.9624 0.8918 4.1663 37 1 8.4910 3.3658 5.7686 38 1 9.8554 2.0707 9.8705 39 1 9.1505 4.4949 3.6486 40 1 9.8287 3.4783 2.3049 41 1 3.6994 4.6315 0.0022 42 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020592893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:35 Heat of formation + Delta-G solvation = -0.084706 kcal Electronic energy + Delta-G solvation = -23951.892364 eV Core-core repulsion = 20319.654768 eV Total energy + Delta-G solvation = -3632.237596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95050 -39.93312 -38.45294 -37.84171 -34.19269 -34.00213 -32.66995 -30.97726 -30.42090 -28.92215 -27.32145 -25.26432 -24.56096 -23.68286 -22.81895 -22.03538 -20.55661 -19.05453 -18.08697 -17.70338 -17.37288 -17.07466 -16.28950 -16.18030 -16.07652 -15.35061 -14.87871 -14.61183 -14.38787 -14.29413 -13.98650 -13.47287 -13.21946 -13.05363 -12.77756 -12.65344 -12.34452 -12.17389 -12.12069 -12.03415 -11.80450 -11.43665 -10.96740 -10.86541 -10.40470 -10.35849 -10.15721 -9.92724 -9.89771 -9.65167 -9.55583 -8.97234 -8.83406 -8.71826 -7.32834 -5.80753 -3.17562 0.92845 1.02123 2.57973 2.84090 3.16846 3.37521 3.41664 3.46153 3.62215 4.06591 4.25367 4.56885 4.60815 4.74286 4.83867 4.88026 4.90971 5.01553 5.03821 5.06535 5.11328 5.16018 5.18392 5.37559 5.38715 5.49924 5.63670 5.66582 5.73660 5.95755 6.03117 6.05441 6.16403 6.21311 6.46632 6.54326 6.64726 6.86063 7.00907 7.50749 7.62658 7.95668 8.21547 8.38530 9.15718 9.88200 10.06308 11.37088 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002755 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.540701 B =10161.296300 C =10754.781218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.321 3.679 4 C -0.175 4.175 5 C 0.014 3.986 6 C -0.106 4.106 7 C 0.511 3.489 8 O -0.530 6.530 9 N -0.717 5.717 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.182 4.182 13 C 0.177 3.823 14 H 0.076 0.924 15 N -0.730 5.730 16 C -0.249 4.249 17 H 0.093 0.907 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.164 4.164 25 C -0.196 4.196 26 C 0.139 3.861 27 N -0.543 5.543 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 2.441 -25.699 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.142 3.858 4 C -0.196 4.196 5 C 0.006 3.994 6 C -0.146 4.146 7 C 0.296 3.704 8 O -0.405 6.405 9 N -0.367 5.367 10 C 0.018 3.982 11 H 0.127 0.873 12 C -0.224 4.224 13 C 0.064 3.936 14 H 0.094 0.906 15 N -0.370 5.370 16 C -0.379 4.379 17 H 0.111 0.889 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.712 3.288 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.204 4.204 25 C -0.216 4.216 26 C -0.016 4.016 27 N -0.267 5.267 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.154 0.846 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.365 1.910 -24.817 28.738 hybrid contribution -0.085 1.050 0.030 1.054 sum -14.450 2.960 -24.787 28.843 Atomic orbital electron populations 1.22845 0.77257 1.02895 1.02407 1.86240 1.22901 1.24580 1.87869 1.19737 0.89211 0.84695 0.92153 1.20861 0.92107 0.98934 1.07710 1.19437 0.94531 0.92381 0.93051 1.20733 0.91995 1.05840 0.96020 1.20343 0.82799 0.76625 0.90583 1.90774 1.55133 1.48486 1.46157 1.46084 1.06792 1.74560 1.09310 1.22668 0.95055 0.98497 0.81982 0.87259 1.24278 1.00519 0.97152 1.00489 1.20855 0.96538 0.92400 0.83791 0.90566 1.42540 1.42985 1.50881 1.00598 1.19082 1.14806 1.19597 0.84402 0.88947 1.24677 0.99144 0.99606 0.95420 1.69698 1.43818 1.45989 0.98266 0.86586 0.82958 0.81839 0.77386 1.20857 1.21582 1.20290 1.23899 0.95589 1.00331 1.00598 1.21820 0.94814 0.99229 1.05782 1.22319 0.92672 0.93602 0.93022 1.67281 1.41021 0.98873 1.19496 0.92392 0.88663 0.92271 0.84234 0.87241 0.87299 0.76809 0.90784 0.90842 0.80389 0.92940 0.90996 0.89803 0.84621 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.68 10.48 -18.73 -0.20 -3.87 16 3 C 0.32 4.03 7.49 -17.12 -0.13 3.90 16 4 C -0.18 -2.04 9.74 -39.28 -0.38 -2.42 16 5 C 0.01 0.15 4.41 -104.35 -0.46 -0.31 16 6 C -0.11 -0.84 5.88 -29.03 -0.17 -1.01 16 7 C 0.51 6.37 7.82 -10.98 -0.09 6.28 16 8 O -0.53 -9.42 15.63 5.56 0.09 -9.33 16 9 N -0.72 -7.96 5.36 -53.01 -0.28 -8.25 16 10 C 0.12 1.81 4.13 -67.12 -0.28 1.54 16 11 H 0.11 1.98 7.46 -51.93 -0.39 1.59 16 12 C -0.18 -2.97 7.68 -25.92 -0.20 -3.17 16 13 C 0.18 3.22 4.55 -67.12 -0.31 2.92 16 14 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 15 N -0.73 -17.08 5.12 -52.63 -0.27 -17.35 16 16 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 20 Si 0.88 22.41 27.73 -169.99 -4.71 17.70 16 21 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 24 C -0.16 -2.31 7.57 -25.91 -0.20 -2.50 16 25 C -0.20 -1.91 9.81 -39.43 -0.39 -2.29 16 26 C 0.14 1.40 11.18 -17.57 -0.20 1.20 16 27 N -0.54 -6.57 9.22 -13.33 -0.12 -6.69 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.40 2.92 8.73 -40.82 -0.36 2.57 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.36 8.49 5.76 -40.82 -0.24 8.25 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 41 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -36.27 358.55 -7.37 -43.64 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.06 Total: 8.69 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.99 Total: -1.48 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.10 Total: -60.75 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.11 Total: -13.21 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.27 -7.37 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020592893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.554 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds