Wall clock time and date at job start Fri Apr 10 2020 17:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35675 * 116.99934 * 2 1 4 4 C 1.38922 * 119.68415 * 180.25655 * 3 2 1 5 5 C 1.38376 * 119.11015 * 180.31457 * 4 3 2 6 6 C 1.50697 * 120.75897 * 179.71261 * 5 4 3 7 7 C 1.50711 * 109.46928 * 269.72065 * 6 5 4 8 8 O 1.21278 * 119.99529 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.85202 * 336.19185 * 10 9 7 12 12 C 1.53777 * 113.68901 * 107.46624 * 10 9 7 13 13 C 1.53785 * 87.08241 * 139.98818 * 12 10 9 14 14 H 1.09002 * 113.61570 * 220.01842 * 13 12 10 15 15 N 1.46500 * 113.68813 * 89.12417 * 13 12 10 16 16 C 1.36936 * 119.99618 * 105.94148 * 15 13 12 17 17 H 1.07990 * 120.00427 * 359.97438 * 16 15 13 18 18 C 1.38824 * 119.99622 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99593 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99988 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46812 * 90.00369 * 20 18 16 22 22 H 1.48502 * 109.47126 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47366 * 330.00666 * 20 18 16 24 24 C 1.53781 * 87.08241 * 334.56547 * 13 12 10 25 25 C 1.38832 * 118.48593 * 359.43605 * 5 4 3 26 26 C 1.38041 * 119.29005 * 0.27402 * 25 5 4 27 27 N 1.31968 * 120.83279 * 0.02562 * 26 25 5 28 28 H 1.09000 * 109.47265 * 60.00256 * 1 2 3 29 29 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46853 * 300.00463 * 1 2 3 31 31 H 1.07997 * 120.44681 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47751 * 149.72033 * 6 5 4 33 33 H 1.08998 * 109.47648 * 29.71649 * 6 5 4 34 34 H 0.97001 * 119.99504 * 359.97438 * 9 7 6 35 35 H 1.08999 * 113.61947 * 25.44244 * 12 10 9 36 36 H 1.08997 * 113.61348 * 254.53459 * 12 10 9 37 37 H 0.96998 * 120.00149 * 285.93056 * 15 13 12 38 38 H 0.96996 * 119.99509 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.61578 * 139.97748 * 24 13 12 40 40 H 1.09001 * 113.61682 * 270.80327 * 24 13 12 41 41 H 1.08003 * 120.35453 * 180.25248 * 25 5 4 42 42 H 1.07999 * 119.58583 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0054 5 6 4.0485 2.5131 0.0013 6 6 5.5512 2.6269 0.0023 7 6 6.0512 2.6643 1.4235 8 8 5.2646 2.6048 2.3447 9 7 7.3724 2.7638 1.6707 10 6 7.8583 2.8006 3.0522 11 1 7.1041 3.1506 3.7570 12 6 8.5615 1.5065 3.4946 13 6 9.5793 2.4012 4.2216 14 1 10.6078 2.0500 4.1376 15 7 9.1996 2.7256 5.5989 16 6 9.8454 2.1251 6.6465 17 1 10.6341 1.4121 6.4576 18 6 9.4859 2.4329 7.9516 19 7 10.1063 1.8553 8.9586 20 14 8.1221 3.6667 8.2785 21 1 6.8195 2.9571 8.3505 22 1 8.3799 4.3599 9.5663 23 1 8.0824 4.6638 7.1787 24 6 9.2189 3.5002 3.2082 25 6 3.2505 3.6491 0.0012 26 6 1.8771 3.5097 0.0003 27 7 1.3186 2.3140 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0229 0.3696 -0.0100 32 1 5.8467 3.5420 -0.5110 33 1 5.9811 1.7672 -0.5116 34 1 8.0014 2.8109 0.9338 35 1 8.9906 0.9386 2.6691 36 1 7.9624 0.8918 4.1663 37 1 8.4910 3.3658 5.7686 38 1 9.8554 2.0707 9.8705 39 1 9.1505 4.4949 3.6486 40 1 9.8287 3.4783 2.3049 41 1 3.6994 4.6315 0.0022 42 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020592893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:35 Heat of formation + Delta-G solvation = -28.964373 kcal Electronic energy + Delta-G solvation = -23953.144680 eV Core-core repulsion = 20319.654768 eV Total energy + Delta-G solvation = -3633.489912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75197 -41.00215 -39.58071 -38.76600 -35.80835 -34.81334 -34.22532 -32.34244 -31.72222 -29.73556 -28.04264 -26.52685 -26.16410 -24.55034 -24.29489 -23.04786 -21.51331 -20.51291 -19.63523 -18.91038 -18.15206 -18.03730 -17.43120 -16.97751 -16.90644 -16.53863 -16.26724 -16.04871 -15.38894 -15.19530 -15.08739 -14.78544 -14.67607 -14.28245 -13.88885 -13.77595 -13.69159 -13.35644 -13.20269 -12.94036 -12.85514 -12.50970 -12.47709 -12.24019 -12.18588 -11.86209 -11.78459 -11.33820 -11.11217 -10.95251 -10.69195 -10.50650 -9.96176 -9.50128 -9.32741 -8.06185 -5.39155 0.15614 0.23500 1.33496 1.37733 1.42974 1.65785 2.09430 2.28455 2.44109 2.82322 3.24460 3.33758 3.48587 3.56818 3.69239 3.83787 3.97427 4.02681 4.14282 4.18432 4.25393 4.27511 4.38935 4.41350 4.54370 4.59330 4.72160 4.77304 4.80910 4.85308 4.91773 5.00849 5.11980 5.23394 5.29796 5.30717 5.47200 5.64987 5.77794 6.19774 6.22690 6.65024 6.83966 7.04353 7.35274 7.81921 7.97514 9.15124 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002755 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.540701 B =10161.296300 C =10754.781218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.295 3.705 4 C -0.194 4.194 5 C 0.004 3.996 6 C -0.093 4.093 7 C 0.509 3.491 8 O -0.590 6.590 9 N -0.699 5.699 10 C 0.129 3.871 11 H 0.074 0.926 12 C -0.173 4.173 13 C 0.149 3.851 14 H 0.075 0.925 15 N -0.738 5.738 16 C -0.230 4.230 17 H 0.064 0.936 18 C -0.062 4.062 19 N -0.981 5.981 20 Si 0.947 3.053 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.252 1.252 24 C -0.134 4.134 25 C -0.197 4.197 26 C 0.127 3.873 27 N -0.560 5.560 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.050 0.950 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.422 0.578 35 H 0.108 0.892 36 H 0.034 0.966 37 H 0.363 0.637 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 4.266 -29.040 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.234 6.234 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.004 4.004 6 C -0.132 4.132 7 C 0.296 3.704 8 O -0.470 6.470 9 N -0.351 5.351 10 C 0.023 3.977 11 H 0.092 0.908 12 C -0.215 4.215 13 C 0.039 3.961 14 H 0.093 0.907 15 N -0.380 5.380 16 C -0.361 4.361 17 H 0.082 0.918 18 C -0.253 4.253 19 N -0.631 5.631 20 Si 0.775 3.225 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.176 1.176 24 C -0.174 4.174 25 C -0.217 4.217 26 C -0.028 4.028 27 N -0.285 5.285 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.053 0.947 37 H 0.196 0.804 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.180 0.820 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.325 3.748 -28.278 31.920 hybrid contribution -0.061 0.407 0.972 1.056 sum -14.385 4.154 -27.306 31.142 Atomic orbital electron populations 1.23015 0.75976 1.04495 1.02114 1.86207 1.24337 1.24807 1.88048 1.20050 0.89931 0.85037 0.93270 1.21113 0.92021 0.99958 1.08338 1.19804 0.96131 0.92031 0.92403 1.20796 0.90125 1.09255 0.93065 1.21120 0.82437 0.74946 0.91852 1.90766 1.56645 1.51185 1.48427 1.45813 1.07129 1.73727 1.08390 1.22215 0.94688 0.97288 0.83493 0.90830 1.24176 0.99459 0.97348 1.00536 1.21236 0.96891 0.95574 0.82375 0.90668 1.42559 1.42818 1.50771 1.01815 1.19092 1.13261 1.17949 0.85765 0.91787 1.25440 1.02159 1.02349 0.95392 1.69861 1.46241 1.48445 0.98591 0.85526 0.79338 0.79919 0.77719 1.21465 1.21771 1.17606 1.23730 0.94872 0.98272 1.00480 1.22199 0.94715 1.00303 1.04518 1.22899 0.93706 0.93804 0.92385 1.67297 1.41622 0.99475 1.20106 0.92046 0.86152 0.93145 0.83811 0.83185 0.84303 0.73945 0.87410 0.94706 0.80364 0.93306 0.91292 0.85123 0.81988 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.33 -7.90 10.48 -89.92 -0.94 -8.84 16 3 C 0.30 7.45 7.49 84.79 0.63 8.08 16 4 C -0.19 -4.36 9.74 22.47 0.22 -4.14 16 5 C 0.00 0.08 4.41 -19.69 -0.09 0.00 16 6 C -0.09 -1.09 5.88 29.10 0.17 -0.92 16 7 C 0.51 11.16 7.82 87.66 0.69 11.84 16 8 O -0.59 -20.46 15.63 -3.02 -0.05 -20.51 16 9 N -0.70 -12.72 5.36 -440.03 -2.36 -15.08 16 10 C 0.13 3.51 4.13 45.52 0.19 3.70 16 11 H 0.07 2.62 7.46 -2.39 -0.02 2.60 16 12 C -0.17 -5.37 7.68 31.12 0.24 -5.13 16 13 C 0.15 5.21 4.55 45.52 0.21 5.42 16 14 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 15 N -0.74 -34.36 5.12 -320.44 -1.64 -36.00 16 16 C -0.23 -13.13 10.45 84.04 0.88 -12.25 16 17 H 0.06 3.95 8.06 -2.92 -0.02 3.92 16 18 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.98 -63.62 13.97 21.66 0.30 -63.31 16 20 Si 0.95 47.04 27.73 68.60 1.90 48.94 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.25 -11.27 6.52 99.48 0.65 -10.63 16 24 C -0.13 -3.26 7.57 31.12 0.24 -3.02 16 25 C -0.20 -3.35 9.81 22.37 0.22 -3.13 16 26 C 0.13 2.37 11.18 84.63 0.95 3.31 16 27 N -0.56 -13.39 9.22 -308.95 -2.85 -16.24 16 28 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.15 0.58 8.10 -2.39 -0.02 0.56 16 33 H 0.14 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.42 3.73 8.73 -92.71 -0.81 2.92 16 35 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.36 16.69 5.76 -92.71 -0.53 16.16 16 38 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.13 2.01 8.12 -2.39 -0.02 1.99 16 41 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -84.50 358.55 0.19 -84.31 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.36 Total: 24.36 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.18 Total: 2.37 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.54 Total: -130.63 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.99 Total: -29.35 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.90 Total: 48.94 kcal Total: -84.50 0.19 -84.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020592893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.346 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds