Wall clock time and date at job start Fri Apr 10 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46779 * 2 1 4 4 C 1.35437 * 116.99550 * 179.97438 * 3 2 1 5 5 N 1.32232 * 119.80220 * 0.02562 * 4 3 2 6 6 C 1.31875 * 121.80053 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18693 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.45681 * 359.97141 * 7 6 5 9 9 C 1.39991 * 118.34978 * 0.02674 * 8 7 6 10 10 C 1.47522 * 120.59618 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99815 * 179.97438 * 10 9 8 12 12 N 1.34785 * 119.99983 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99517 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.85709 * 332.85779 * 13 12 10 15 15 C 1.53787 * 113.60894 * 104.16976 * 13 12 10 16 16 C 1.53784 * 87.07989 * 89.11348 * 15 13 12 17 17 H 1.09005 * 113.61606 * 139.97911 * 16 15 13 18 18 N 1.46500 * 113.68953 * 270.87002 * 16 15 13 19 19 C 1.36933 * 119.99960 * 183.56558 * 18 16 15 20 20 H 1.07998 * 120.00379 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00022 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00233 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47087 * 89.99669 * 23 21 19 25 25 H 1.48503 * 109.47016 * 209.99961 * 23 21 19 26 26 H 1.48505 * 109.46842 * 329.99743 * 23 21 19 27 27 C 1.53776 * 87.08223 * 25.43246 * 16 15 13 28 28 H 1.09006 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47404 * 299.99810 * 1 2 3 30 30 H 1.09003 * 109.47214 * 59.99568 * 1 2 3 31 31 H 1.08997 * 109.46945 * 240.00635 * 2 1 3 32 32 H 1.08998 * 109.47271 * 119.99976 * 2 1 3 33 33 H 1.08011 * 119.40632 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.27288 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.82620 * 180.29110 * 8 7 6 36 36 H 0.96999 * 120.00081 * 359.97438 * 12 10 9 37 37 H 1.09001 * 113.61086 * 203.65999 * 15 13 12 38 38 H 1.08994 * 113.61856 * 334.56212 * 15 13 12 39 39 H 0.97000 * 119.99627 * 3.55794 * 18 16 15 40 40 H 0.97002 * 119.99514 * 179.97438 * 22 21 19 41 41 H 1.09005 * 113.60993 * 220.02308 * 27 16 15 42 42 H 1.08999 * 113.69606 * 89.13368 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4634 0.6004 0.0005 7 6 6.0625 1.8475 0.0011 8 6 5.2713 2.9822 0.0011 9 6 3.8805 2.8229 0.0010 10 6 2.9899 3.9990 0.0015 11 8 1.7834 3.8480 0.0010 12 7 3.5137 5.2409 0.0015 13 6 2.6293 6.4088 0.0015 14 1 1.6612 6.2067 -0.4567 15 6 2.5324 7.1081 1.3678 16 6 3.7393 7.9554 0.9315 17 1 3.6667 9.0026 1.2251 18 7 5.0325 7.3574 1.2726 19 6 6.1918 8.0369 1.0094 20 1 6.1530 9.0135 0.5500 21 6 7.4171 7.4700 1.3322 22 7 7.4646 6.2796 1.8916 23 14 8.9988 8.3967 0.9725 24 1 9.3585 9.2353 2.1440 25 1 10.0907 7.4266 0.7041 26 1 8.8043 9.2647 -0.2167 27 6 3.3014 7.6905 -0.5186 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0819 -0.2851 0.0001 34 1 7.1389 1.9344 0.0007 35 1 5.7155 3.9667 -0.0032 36 1 4.4762 5.3614 0.0016 37 1 1.6176 7.6861 1.4985 38 1 2.7427 6.4502 2.2109 39 1 5.0674 6.4801 1.6850 40 1 8.3209 5.8834 2.1168 41 1 4.1327 7.5026 -1.1983 42 1 2.5970 8.4271 -0.9050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023044075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:49 Heat of formation + Delta-G solvation = 0.026117 kcal Electronic energy + Delta-G solvation = -25302.267263 eV Core-core repulsion = 21670.034473 eV Total energy + Delta-G solvation = -3632.232791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77712 -39.46233 -37.94066 -37.59123 -33.67485 -33.09193 -32.03093 -31.83259 -30.07058 -29.69538 -25.26846 -24.94316 -24.39226 -23.81061 -22.33984 -22.21794 -20.26371 -18.94949 -18.33219 -17.50456 -16.99183 -16.75794 -16.26612 -15.46047 -15.05261 -14.82652 -14.64739 -14.27270 -14.17619 -13.80954 -13.60521 -13.48601 -13.17584 -12.86865 -12.60403 -12.32542 -12.30913 -11.95019 -11.75007 -11.49352 -11.41024 -10.96462 -10.83999 -10.75485 -10.34102 -10.25281 -9.93242 -9.83163 -9.80785 -9.56092 -9.32826 -8.97523 -8.57338 -8.34660 -7.10080 -5.91201 -3.20623 0.80850 1.36631 3.05478 3.17984 3.35438 3.42237 3.42459 3.53290 3.99771 4.29343 4.48078 4.92005 4.94587 4.98505 5.02754 5.08092 5.15178 5.24152 5.27986 5.35546 5.41888 5.51185 5.54492 5.66448 5.74743 5.80841 5.94167 5.96162 6.05955 6.15197 6.21584 6.34833 6.38584 6.45067 6.61586 6.67422 6.86206 7.14046 7.33328 7.62616 7.78681 8.05100 8.28238 8.67310 9.39320 9.94479 10.30061 11.30861 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.004438 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.909258 B = 6307.052095 C = 7851.356622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.270 6.270 4 C 0.368 3.632 5 N -0.552 5.552 6 C 0.158 3.842 7 C -0.215 4.215 8 C 0.004 3.996 9 C -0.209 4.209 10 C 0.564 3.436 11 O -0.531 6.531 12 N -0.699 5.699 13 C 0.129 3.871 14 H 0.089 0.911 15 C -0.164 4.164 16 C 0.161 3.839 17 H 0.053 0.947 18 N -0.710 5.710 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.179 4.179 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.074 0.926 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -10.392 -4.753 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.175 6.175 4 C 0.188 3.812 5 N -0.276 5.276 6 C 0.002 3.998 7 C -0.235 4.235 8 C -0.022 4.022 9 C -0.215 4.215 10 C 0.350 3.650 11 O -0.408 6.408 12 N -0.353 5.353 13 C 0.024 3.976 14 H 0.107 0.893 15 C -0.203 4.203 16 C 0.050 3.950 17 H 0.071 0.929 18 N -0.352 5.352 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.220 4.220 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.856 -11.011 -4.791 14.921 hybrid contribution 2.036 0.826 0.054 2.198 sum -6.820 -10.185 -4.737 13.141 Atomic orbital electron populations 1.21776 0.93041 1.02299 1.03679 1.22637 0.95023 0.81673 1.02103 1.86530 1.15730 1.29362 1.85884 1.19777 0.84473 0.88513 0.88408 1.67439 1.06638 1.32373 1.21185 1.22604 0.89118 0.97596 0.90464 1.21969 1.02046 0.92732 1.06768 1.21953 0.91059 1.01023 0.88162 1.20086 0.94376 0.92323 1.14682 1.17782 0.87631 0.82748 0.76835 1.90771 1.14210 1.86061 1.49801 1.45796 1.11305 1.04253 1.73909 1.21686 0.93770 0.84763 0.97399 0.89253 1.23725 0.99307 0.99646 0.97671 1.21215 0.85901 0.95762 0.92085 0.92940 1.42264 0.99523 1.20721 1.72696 1.19252 0.84136 1.00231 1.33527 0.90928 1.24723 0.97584 0.97013 1.01313 1.69642 1.24764 1.15970 1.47719 0.86188 0.83371 0.78710 0.77884 1.21732 1.21759 1.20755 1.24061 1.00515 0.95943 1.01470 0.90659 0.91528 0.91593 0.91859 0.91804 0.82123 0.83763 0.82627 0.74870 0.89470 0.91318 0.78123 0.93370 0.90712 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.77 6.03 37.16 0.22 0.99 16 3 O -0.27 -4.56 8.22 -39.77 -0.33 -4.89 16 4 C 0.37 6.19 7.51 -16.61 -0.12 6.06 16 5 N -0.55 -8.10 9.21 -12.98 -0.12 -8.22 16 6 C 0.16 1.94 11.17 -17.49 -0.20 1.75 16 7 C -0.21 -2.79 10.09 -39.50 -0.40 -3.19 16 8 C 0.00 0.06 9.64 -38.89 -0.37 -0.32 16 9 C -0.21 -3.61 5.90 -104.69 -0.62 -4.22 16 10 C 0.56 10.70 7.77 -12.47 -0.10 10.61 16 11 O -0.53 -11.24 14.84 -16.49 -0.24 -11.49 16 12 N -0.70 -12.66 4.90 -54.06 -0.27 -12.92 16 13 C 0.13 2.22 4.28 -67.12 -0.29 1.94 16 14 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 15 C -0.16 -2.79 7.58 -25.91 -0.20 -2.99 16 16 C 0.16 3.07 4.53 -67.12 -0.30 2.76 16 17 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 18 N -0.71 -16.34 4.41 -52.64 -0.23 -16.57 16 19 C -0.24 -6.14 9.99 -15.06 -0.15 -6.29 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -25.33 13.06 55.49 0.72 -24.61 16 23 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.18 -2.99 7.61 -25.92 -0.20 -3.19 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.16 2.55 6.52 -52.49 -0.34 2.21 16 36 H 0.41 7.74 5.28 -40.82 -0.22 7.52 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.38 9.33 6.98 -40.82 -0.29 9.05 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -30.18 353.30 -8.45 -38.62 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -5.85 Total: 16.41 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.43 Total: 2.38 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.11 Total: -62.32 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.57 Total: -16.37 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.18 -8.45 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023044075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.651 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds