Wall clock time and date at job start Fri Apr 10 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46779 * 2 1 4 4 C 1.35437 * 116.99550 * 179.97438 * 3 2 1 5 5 N 1.32232 * 119.80220 * 0.02562 * 4 3 2 6 6 C 1.31875 * 121.80053 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18693 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.45681 * 359.97141 * 7 6 5 9 9 C 1.39991 * 118.34978 * 0.02674 * 8 7 6 10 10 C 1.47522 * 120.59618 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99815 * 179.97438 * 10 9 8 12 12 N 1.34785 * 119.99983 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99517 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.85709 * 332.85779 * 13 12 10 15 15 C 1.53787 * 113.60894 * 104.16976 * 13 12 10 16 16 C 1.53784 * 87.07989 * 89.11348 * 15 13 12 17 17 H 1.09005 * 113.61606 * 139.97911 * 16 15 13 18 18 N 1.46500 * 113.68953 * 270.87002 * 16 15 13 19 19 C 1.36933 * 119.99960 * 183.56558 * 18 16 15 20 20 H 1.07998 * 120.00379 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00022 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00233 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47087 * 89.99669 * 23 21 19 25 25 H 1.48503 * 109.47016 * 209.99961 * 23 21 19 26 26 H 1.48505 * 109.46842 * 329.99743 * 23 21 19 27 27 C 1.53776 * 87.08223 * 25.43246 * 16 15 13 28 28 H 1.09006 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47404 * 299.99810 * 1 2 3 30 30 H 1.09003 * 109.47214 * 59.99568 * 1 2 3 31 31 H 1.08997 * 109.46945 * 240.00635 * 2 1 3 32 32 H 1.08998 * 109.47271 * 119.99976 * 2 1 3 33 33 H 1.08011 * 119.40632 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.27288 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.82620 * 180.29110 * 8 7 6 36 36 H 0.96999 * 120.00081 * 359.97438 * 12 10 9 37 37 H 1.09001 * 113.61086 * 203.65999 * 15 13 12 38 38 H 1.08994 * 113.61856 * 334.56212 * 15 13 12 39 39 H 0.97000 * 119.99627 * 3.55794 * 18 16 15 40 40 H 0.97002 * 119.99514 * 179.97438 * 22 21 19 41 41 H 1.09005 * 113.60993 * 220.02308 * 27 16 15 42 42 H 1.08999 * 113.69606 * 89.13368 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4634 0.6004 0.0005 7 6 6.0625 1.8475 0.0011 8 6 5.2713 2.9822 0.0011 9 6 3.8805 2.8229 0.0010 10 6 2.9899 3.9990 0.0015 11 8 1.7834 3.8480 0.0010 12 7 3.5137 5.2409 0.0015 13 6 2.6293 6.4088 0.0015 14 1 1.6612 6.2067 -0.4567 15 6 2.5324 7.1081 1.3678 16 6 3.7393 7.9554 0.9315 17 1 3.6667 9.0026 1.2251 18 7 5.0325 7.3574 1.2726 19 6 6.1918 8.0369 1.0094 20 1 6.1530 9.0135 0.5500 21 6 7.4171 7.4700 1.3322 22 7 7.4646 6.2796 1.8916 23 14 8.9988 8.3967 0.9725 24 1 9.3585 9.2353 2.1440 25 1 10.0907 7.4266 0.7041 26 1 8.8043 9.2647 -0.2167 27 6 3.3014 7.6905 -0.5186 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0819 -0.2851 0.0001 34 1 7.1389 1.9344 0.0007 35 1 5.7155 3.9667 -0.0032 36 1 4.4762 5.3614 0.0016 37 1 1.6176 7.6861 1.4985 38 1 2.7427 6.4502 2.2109 39 1 5.0674 6.4801 1.6850 40 1 8.3209 5.8834 2.1168 41 1 4.1327 7.5026 -1.1983 42 1 2.5970 8.4271 -0.9050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023044075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:48 Heat of formation + Delta-G solvation = -19.504631 kcal Electronic energy + Delta-G solvation = -25303.114180 eV Core-core repulsion = 21670.034473 eV Total energy + Delta-G solvation = -3633.079707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99412 -40.85594 -39.16000 -38.98382 -35.44665 -34.52800 -33.20817 -32.98429 -31.73306 -30.94336 -26.76421 -26.33466 -25.81213 -25.10532 -23.78921 -23.27212 -21.66552 -20.39396 -19.53107 -19.20912 -18.50070 -17.93729 -17.37474 -16.90150 -16.53920 -16.25576 -15.95003 -15.75274 -15.57933 -15.07779 -15.01458 -14.89922 -14.72454 -14.11320 -13.56637 -13.37432 -13.35044 -13.31304 -13.26839 -13.05556 -12.77503 -12.52977 -12.45408 -12.10546 -11.89714 -11.73671 -11.69278 -11.19746 -11.07372 -11.03809 -10.82000 -10.62400 -9.98686 -9.54377 -8.96548 -7.89795 -5.18789 -0.36887 0.20551 1.51983 1.54052 1.60741 1.84072 1.96818 2.17007 2.59475 2.78321 3.23818 3.41791 3.64610 3.73594 3.79673 3.87643 3.94485 4.00572 4.06857 4.13035 4.21689 4.23280 4.38178 4.42277 4.49132 4.81650 4.84500 4.87574 4.91697 4.92736 4.98261 5.07927 5.12763 5.19726 5.24433 5.39508 5.39937 5.57609 5.73844 6.22552 6.32642 6.54202 6.70826 7.21620 7.38896 8.09961 8.36012 9.32276 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.004438 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.909258 B = 6307.052095 C = 7851.356622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.296 6.296 4 C 0.356 3.644 5 N -0.553 5.553 6 C 0.172 3.828 7 C -0.210 4.210 8 C -0.004 4.004 9 C -0.236 4.236 10 C 0.560 3.440 11 O -0.561 6.561 12 N -0.698 5.698 13 C 0.124 3.876 14 H 0.094 0.906 15 C -0.152 4.152 16 C 0.146 3.854 17 H 0.057 0.943 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.074 0.926 21 C -0.061 4.061 22 N -0.958 5.958 23 Si 0.965 3.035 24 H -0.295 1.295 25 H -0.295 1.295 26 H -0.274 1.274 27 C -0.159 4.159 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.209 0.791 34 H 0.170 0.830 35 H 0.141 0.859 36 H 0.408 0.592 37 H 0.120 0.880 38 H 0.048 0.952 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.058 0.942 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -10.994 -5.366 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.202 6.202 4 C 0.176 3.824 5 N -0.278 5.278 6 C 0.015 3.985 7 C -0.230 4.230 8 C -0.030 4.030 9 C -0.243 4.243 10 C 0.348 3.652 11 O -0.441 6.441 12 N -0.350 5.350 13 C 0.019 3.981 14 H 0.112 0.888 15 C -0.191 4.191 16 C 0.037 3.963 17 H 0.075 0.925 18 N -0.360 5.360 19 C -0.373 4.373 20 H 0.092 0.908 21 C -0.254 4.254 22 N -0.608 5.608 23 Si 0.795 3.205 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.200 4.200 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.226 0.774 34 H 0.187 0.813 35 H 0.159 0.841 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.067 0.933 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.673 -11.577 -5.423 15.449 hybrid contribution 1.955 0.978 0.250 2.200 sum -6.718 -10.599 -5.173 13.573 Atomic orbital electron populations 1.21806 0.91463 1.04136 1.02835 1.22912 0.96289 0.80153 1.02613 1.86502 1.16034 1.31762 1.85857 1.19911 0.84887 0.88769 0.88788 1.67563 1.07549 1.31407 1.21290 1.23397 0.88582 0.98919 0.87567 1.22286 1.03091 0.92129 1.05450 1.21902 0.90734 1.01446 0.88926 1.20046 0.94842 0.92124 1.17246 1.18105 0.87573 0.83377 0.76124 1.90731 1.15343 1.86508 1.51495 1.45837 1.11133 1.04532 1.73536 1.21815 0.93872 0.84729 0.97722 0.88838 1.23718 0.99666 0.99028 0.96654 1.21452 0.84979 0.95971 0.93922 0.92505 1.42352 1.00478 1.20321 1.72878 1.19525 0.85138 1.00193 1.32437 0.90765 1.25356 1.00056 0.97897 1.02095 1.69768 1.24851 1.17114 1.49062 0.85280 0.80196 0.77477 0.77537 1.22293 1.22106 1.19911 1.23950 1.00438 0.96233 0.99405 0.87421 0.92472 0.92273 0.91100 0.91376 0.77445 0.81263 0.84145 0.75336 0.86223 0.93347 0.79255 0.93877 0.92344 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.06 1.36 6.03 71.98 0.43 1.79 16 3 O -0.30 -10.18 8.22 -66.51 -0.55 -10.72 16 4 C 0.36 12.04 7.51 85.13 0.64 12.68 16 5 N -0.55 -15.50 9.21 -307.99 -2.84 -18.33 16 6 C 0.17 3.77 11.17 84.71 0.95 4.71 16 7 C -0.21 -5.12 10.09 22.32 0.23 -4.90 16 8 C 0.00 -0.13 9.64 22.72 0.22 0.09 16 9 C -0.24 -8.42 5.90 -19.91 -0.12 -8.53 16 10 C 0.56 22.08 7.77 86.69 0.67 22.75 16 11 O -0.56 -24.54 14.84 16.81 0.25 -24.29 16 12 N -0.70 -26.02 4.90 -443.20 -2.17 -28.19 16 13 C 0.12 4.21 4.28 45.52 0.19 4.41 16 14 H 0.09 3.13 7.54 -2.39 -0.02 3.11 16 15 C -0.15 -5.03 7.58 31.12 0.24 -4.79 16 16 C 0.15 5.45 4.53 45.52 0.21 5.65 16 17 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 18 N -0.72 -33.37 4.41 -320.45 -1.41 -34.78 16 19 C -0.24 -12.33 9.99 84.03 0.84 -11.49 16 20 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 21 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 22 N -0.96 -52.68 13.06 21.65 0.28 -52.40 16 23 Si 0.96 43.13 29.55 68.60 2.03 45.16 16 24 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C -0.16 -5.13 7.61 31.12 0.24 -4.90 16 28 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.21 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.14 4.83 6.52 -2.91 -0.02 4.81 16 36 H 0.41 15.96 5.28 -92.71 -0.49 15.47 16 37 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.37 18.66 6.98 -92.71 -0.65 18.02 16 40 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -66.00 353.30 1.44 -64.56 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: -0.09 Total: 46.38 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.94 Total: 12.61 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -6.14 Total: -133.70 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.30 Total: -35.02 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.00 1.44 -64.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023044075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.055 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds