Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.64432 * 2 1 4 4 C 1.54325 * 110.72310 * 236.66312 * 2 1 3 5 5 N 1.47027 * 107.26932 * 219.44818 * 4 2 1 6 6 C 1.36931 * 125.64830 * 178.92013 * 5 4 2 7 7 H 1.08006 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00361 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99864 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47415 * 60.00328 * 10 8 6 12 12 H 1.48505 * 109.46766 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47198 * 299.99859 * 10 8 6 14 14 C 1.47428 * 108.70160 * 358.93479 * 5 4 2 15 15 C 1.54906 * 104.83431 * 24.13329 * 14 5 4 16 16 H 1.09005 * 111.03683 * 81.07351 * 15 14 5 17 17 N 1.46494 * 111.00344 * 204.91234 * 15 14 5 18 18 C 1.34776 * 120.00039 * 267.19592 * 17 15 14 19 19 O 1.21623 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.47286 * 120.00075 * 180.02562 * 18 17 15 21 21 C 1.37995 * 120.88388 * 0.02562 * 20 18 17 22 22 N 1.34344 * 120.37564 * 179.72411 * 21 20 18 23 23 C 1.46495 * 118.80496 * 180.24853 * 22 21 20 24 24 C 1.35581 * 122.38672 * 0.52831 * 22 21 20 25 25 C 1.34870 * 121.79981 * 359.46130 * 24 22 21 26 26 C 1.41668 * 119.33954 * 0.26290 * 25 24 22 27 27 O 1.22086 * 121.07031 * 179.97438 * 26 25 24 28 28 H 1.08992 * 109.47765 * 296.86526 * 1 2 3 29 29 H 1.09007 * 109.46609 * 56.86192 * 1 2 3 30 30 H 1.08996 * 109.47249 * 176.85585 * 1 2 3 31 31 H 1.08999 * 109.88015 * 338.85971 * 4 2 1 32 32 H 1.08998 * 109.88482 * 100.02976 * 4 2 1 33 33 H 0.97001 * 120.00200 * 179.97438 * 9 8 6 34 34 H 1.08997 * 110.37115 * 265.29006 * 14 5 4 35 35 H 1.09001 * 110.35978 * 142.97327 * 14 5 4 36 36 H 0.96999 * 119.99866 * 87.19548 * 17 15 14 37 37 H 1.07996 * 119.81038 * 0.02562 * 21 20 18 38 38 H 1.08995 * 109.47296 * 270.26373 * 23 22 21 39 39 H 1.08993 * 109.47318 * 30.27172 * 23 22 21 40 40 H 1.09003 * 109.47142 * 150.26967 * 23 22 21 41 41 H 1.08002 * 119.10221 * 179.74802 * 24 22 21 42 42 H 1.08000 * 120.32766 * 180.23610 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5520 -0.7362 6 6 4.0036 -2.4004 -1.4972 7 1 3.7599 -2.5568 -2.5377 8 6 5.0865 -3.0593 -0.9313 9 7 5.3838 -2.8683 0.3365 10 14 6.1225 -4.2160 -1.9696 11 1 6.7135 -3.4655 -3.1066 12 1 7.2094 -4.7899 -1.1362 13 1 5.2678 -5.3127 -2.4913 14 6 3.4632 -1.2485 0.6898 15 6 2.0789 -0.7933 1.2152 16 1 1.4446 -1.6507 1.4408 17 7 2.2213 0.0737 2.3874 18 6 2.1871 -0.4565 3.6260 19 8 2.0384 -1.6550 3.7706 20 6 2.3298 0.4152 4.8045 21 6 2.4988 1.7773 4.6617 22 7 2.6224 2.5637 5.7439 23 6 2.7948 4.0058 5.5526 24 6 2.5988 2.0704 7.0066 25 6 2.4383 0.7540 7.2524 26 6 2.2954 -0.1428 6.1651 27 8 2.1488 -1.3405 6.3513 28 1 -0.3634 0.4643 0.9166 29 1 -0.3633 0.5618 -0.8606 30 1 -0.3633 -1.0261 -0.0564 31 1 1.3130 -1.4785 -1.5750 32 1 2.3742 -0.1058 -1.9975 33 1 6.1402 -3.3291 0.7320 34 1 4.1930 -0.4465 0.7994 35 1 3.7959 -2.1405 1.2207 36 1 2.3403 1.0295 2.2721 37 1 2.5270 2.2143 3.6745 38 1 3.8570 4.2376 5.4751 39 1 2.2879 4.3142 4.6384 40 1 2.3678 4.5387 6.4022 41 1 2.7070 2.7507 7.8385 42 1 2.4193 0.3873 8.2681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080102276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 3.324408 kcal Electronic energy + Delta-G solvation = -25184.535667 eV Core-core repulsion = 21552.445901 eV Total energy + Delta-G solvation = -3632.089766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12179 -39.13969 -37.89447 -37.07772 -33.83502 -32.87363 -32.61412 -31.69260 -30.29673 -27.83371 -27.07894 -25.60201 -24.83866 -23.50209 -22.73902 -20.82393 -20.01390 -19.62045 -18.01348 -17.53400 -16.84863 -16.70365 -16.01744 -15.77421 -15.52949 -14.79911 -14.60513 -14.28991 -13.93295 -13.68987 -13.48621 -13.42610 -13.09635 -12.86934 -12.76201 -12.52399 -12.38637 -12.22445 -12.13133 -11.64071 -11.16739 -11.01739 -10.71342 -10.57419 -10.31888 -9.92518 -9.85771 -9.72765 -9.69450 -9.58559 -8.98992 -8.57141 -8.34199 -8.00247 -6.76208 -5.54810 -2.99137 0.81410 1.21458 2.17372 3.28154 3.46748 3.50659 3.53330 3.55746 3.95731 4.03586 4.17599 4.44497 4.56314 4.58196 4.73360 4.86517 4.96726 5.15991 5.30250 5.36262 5.49762 5.50165 5.60736 5.63562 5.81849 6.01868 6.08421 6.20737 6.22328 6.36652 6.38952 6.45682 6.56093 6.57966 6.71505 6.90321 7.04655 7.56127 7.69166 7.95833 8.07157 8.21579 8.47318 8.84995 9.29426 9.90850 10.54220 11.47672 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.003797 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.020584 B = 7372.976437 C = 8043.988388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.149 3.851 15 C 0.122 3.878 16 H 0.094 0.906 17 N -0.718 5.718 18 C 0.567 3.433 19 O -0.504 6.504 20 C -0.284 4.284 21 C 0.163 3.837 22 N -0.478 5.478 23 C 0.056 3.944 24 C 0.124 3.876 25 C -0.267 4.267 26 C 0.403 3.597 27 O -0.474 6.474 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.253 0.747 34 H 0.012 0.988 35 H 0.112 0.888 36 H 0.384 0.616 37 H 0.165 0.835 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 21.417 11.531 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.089 0.911 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.745 3.255 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.023 3.977 15 C 0.017 3.983 16 H 0.112 0.888 17 N -0.370 5.370 18 C 0.353 3.647 19 O -0.377 6.377 20 C -0.295 4.295 21 C 0.034 3.966 22 N -0.166 5.166 23 C -0.086 4.086 24 C 0.000 4.000 25 C -0.291 4.291 26 C 0.288 3.712 27 O -0.354 6.354 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.182 0.818 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.180 0.820 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.429 19.914 11.749 24.286 hybrid contribution 0.779 0.290 -0.643 1.051 sum -6.650 20.204 11.106 23.995 Atomic orbital electron populations 1.21739 0.95030 1.01990 1.00701 1.22427 0.95174 0.98978 0.96495 0.91062 1.21328 0.90315 0.93153 0.93649 1.44384 1.30843 1.50392 1.07314 1.19005 1.06350 1.17438 0.92943 0.90437 1.24824 0.98796 1.00486 0.96351 1.69801 1.29925 1.45856 1.10843 0.86163 0.79798 0.80707 0.78852 1.21285 1.21569 1.21094 1.22228 0.89428 1.01127 0.84959 1.22669 1.00957 0.92400 0.82271 0.88846 1.45775 1.75370 1.10189 1.05688 1.17432 0.77702 0.87657 0.81912 1.90884 1.47032 1.14411 1.85401 1.22685 1.16677 0.92283 0.97876 1.22199 0.92139 0.91027 0.91282 1.42602 1.60207 1.09072 1.04683 1.22458 1.04026 0.77170 1.04925 1.21642 0.95824 0.96521 0.86013 1.22495 1.11721 0.92904 1.01982 1.18221 0.76851 0.89305 0.86859 1.90845 1.41079 1.16474 1.86974 0.93165 0.92995 0.92403 0.95511 0.96012 0.93571 0.97028 0.87070 0.78227 0.81806 0.90104 0.89048 0.89114 0.82043 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.16 37.15 0.34 -1.58 16 2 C -0.11 -1.89 3.20 -88.79 -0.28 -2.17 16 3 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 4 C 0.14 2.99 6.84 -3.06 -0.02 2.96 16 5 N -0.60 -16.01 3.39 -170.07 -0.58 -16.59 16 6 C -0.23 -6.62 10.27 -15.06 -0.15 -6.77 16 7 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -28.36 10.09 55.49 0.56 -27.80 16 10 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.15 3.82 5.58 -2.53 -0.01 3.81 16 15 C 0.12 2.49 2.87 -65.79 -0.19 2.30 16 16 H 0.09 2.16 7.44 -51.93 -0.39 1.77 16 17 N -0.72 -12.04 5.15 -52.85 -0.27 -12.31 16 18 C 0.57 11.10 7.77 -12.58 -0.10 11.00 16 19 O -0.50 -12.88 15.21 -14.76 -0.22 -13.11 16 20 C -0.28 -4.34 6.05 -102.71 -0.62 -4.96 16 21 C 0.16 1.46 9.80 -16.54 -0.16 1.30 16 22 N -0.48 -2.84 2.97 -124.40 -0.37 -3.21 16 23 C 0.06 0.06 10.52 59.84 0.63 0.69 16 24 C 0.12 0.80 10.17 -17.09 -0.17 0.62 16 25 C -0.27 -2.92 10.01 -39.47 -0.40 -3.31 16 26 C 0.40 6.85 6.96 -34.68 -0.24 6.61 16 27 O -0.47 -10.71 16.41 -15.18 -0.25 -10.96 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 3.41 5.88 -51.93 -0.31 3.11 16 36 H 0.38 4.68 6.64 -40.82 -0.27 4.41 16 37 H 0.16 0.92 6.35 -52.49 -0.33 0.59 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.09 -0.01 7.96 -51.93 -0.41 -0.42 16 40 H 0.09 -0.07 7.96 -51.93 -0.41 -0.49 16 41 H 0.16 0.31 7.97 -52.49 -0.42 -0.11 16 42 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -42.42 347.74 -8.26 -50.68 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.86 Total: -0.03 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.48 Total: 10.16 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.66 Total: -59.91 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.47 Total: -24.07 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -42.42 -8.26 -50.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080102276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.005 kcal (2) G-P(sol) polarization free energy of solvation -42.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds