Wall clock time and date at job start Fri Apr 10 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.64432 * 2 1 4 4 C 1.54325 * 110.72310 * 236.66312 * 2 1 3 5 5 N 1.47027 * 107.26932 * 219.44818 * 4 2 1 6 6 C 1.36931 * 125.64830 * 178.92013 * 5 4 2 7 7 H 1.08006 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00361 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99864 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47415 * 60.00328 * 10 8 6 12 12 H 1.48505 * 109.46766 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47198 * 299.99859 * 10 8 6 14 14 C 1.47428 * 108.70160 * 358.93479 * 5 4 2 15 15 C 1.54906 * 104.83431 * 24.13329 * 14 5 4 16 16 H 1.09005 * 111.03683 * 81.07351 * 15 14 5 17 17 N 1.46494 * 111.00344 * 204.91234 * 15 14 5 18 18 C 1.34776 * 120.00039 * 267.19592 * 17 15 14 19 19 O 1.21623 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.47286 * 120.00075 * 180.02562 * 18 17 15 21 21 C 1.37995 * 120.88388 * 0.02562 * 20 18 17 22 22 N 1.34344 * 120.37564 * 179.72411 * 21 20 18 23 23 C 1.46495 * 118.80496 * 180.24853 * 22 21 20 24 24 C 1.35581 * 122.38672 * 0.52831 * 22 21 20 25 25 C 1.34870 * 121.79981 * 359.46130 * 24 22 21 26 26 C 1.41668 * 119.33954 * 0.26290 * 25 24 22 27 27 O 1.22086 * 121.07031 * 179.97438 * 26 25 24 28 28 H 1.08992 * 109.47765 * 296.86526 * 1 2 3 29 29 H 1.09007 * 109.46609 * 56.86192 * 1 2 3 30 30 H 1.08996 * 109.47249 * 176.85585 * 1 2 3 31 31 H 1.08999 * 109.88015 * 338.85971 * 4 2 1 32 32 H 1.08998 * 109.88482 * 100.02976 * 4 2 1 33 33 H 0.97001 * 120.00200 * 179.97438 * 9 8 6 34 34 H 1.08997 * 110.37115 * 265.29006 * 14 5 4 35 35 H 1.09001 * 110.35978 * 142.97327 * 14 5 4 36 36 H 0.96999 * 119.99866 * 87.19548 * 17 15 14 37 37 H 1.07996 * 119.81038 * 0.02562 * 21 20 18 38 38 H 1.08995 * 109.47296 * 270.26373 * 23 22 21 39 39 H 1.08993 * 109.47318 * 30.27172 * 23 22 21 40 40 H 1.09003 * 109.47142 * 150.26967 * 23 22 21 41 41 H 1.08002 * 119.10221 * 179.74802 * 24 22 21 42 42 H 1.08000 * 120.32766 * 180.23610 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5520 -0.7362 6 6 4.0036 -2.4004 -1.4972 7 1 3.7599 -2.5568 -2.5377 8 6 5.0865 -3.0593 -0.9313 9 7 5.3838 -2.8683 0.3365 10 14 6.1225 -4.2160 -1.9696 11 1 6.7135 -3.4655 -3.1066 12 1 7.2094 -4.7899 -1.1362 13 1 5.2678 -5.3127 -2.4913 14 6 3.4632 -1.2485 0.6898 15 6 2.0789 -0.7933 1.2152 16 1 1.4446 -1.6507 1.4408 17 7 2.2213 0.0737 2.3874 18 6 2.1871 -0.4565 3.6260 19 8 2.0384 -1.6550 3.7706 20 6 2.3298 0.4152 4.8045 21 6 2.4988 1.7773 4.6617 22 7 2.6224 2.5637 5.7439 23 6 2.7948 4.0058 5.5526 24 6 2.5988 2.0704 7.0066 25 6 2.4383 0.7540 7.2524 26 6 2.2954 -0.1428 6.1651 27 8 2.1488 -1.3405 6.3513 28 1 -0.3634 0.4643 0.9166 29 1 -0.3633 0.5618 -0.8606 30 1 -0.3633 -1.0261 -0.0564 31 1 1.3130 -1.4785 -1.5750 32 1 2.3742 -0.1058 -1.9975 33 1 6.1402 -3.3291 0.7320 34 1 4.1930 -0.4465 0.7994 35 1 3.7959 -2.1405 1.2207 36 1 2.3403 1.0295 2.2721 37 1 2.5270 2.2143 3.6745 38 1 3.8570 4.2376 5.4751 39 1 2.2879 4.3142 4.6384 40 1 2.3678 4.5387 6.4022 41 1 2.7070 2.7507 7.8385 42 1 2.4193 0.3873 8.2681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080102276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:04 Heat of formation + Delta-G solvation = -30.072119 kcal Electronic energy + Delta-G solvation = -25185.983849 eV Core-core repulsion = 21552.445901 eV Total energy + Delta-G solvation = -3633.537948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.00573 -40.60634 -39.21421 -38.60319 -35.63728 -34.48792 -33.45093 -32.80158 -32.12669 -29.49246 -27.69108 -27.34655 -25.99563 -25.04838 -23.73341 -22.41476 -21.67904 -21.13095 -19.03102 -18.92486 -18.40412 -17.72682 -17.11192 -16.94764 -16.68466 -16.64264 -15.68237 -15.62189 -15.51262 -15.14644 -14.74832 -14.41857 -14.38150 -14.17289 -14.12543 -13.87534 -13.50636 -13.35319 -13.15813 -13.03133 -12.81696 -12.63381 -12.57886 -12.26375 -12.03074 -11.83507 -11.64565 -11.41377 -11.10458 -10.76609 -10.69164 -10.29256 -9.97347 -9.02154 -8.89996 -7.77313 -5.24686 -0.13485 0.41792 1.42440 1.47965 1.54368 1.58617 1.96722 2.17227 2.49505 2.85755 3.31818 3.34230 3.64448 3.69020 3.80373 3.83208 3.95987 4.07182 4.11650 4.29710 4.46135 4.55686 4.62002 4.63829 4.67831 4.69024 4.83062 4.90213 4.95386 5.04256 5.10111 5.22928 5.28517 5.39514 5.45502 5.50509 5.67649 5.75691 5.81668 5.83361 6.27938 6.71612 7.05859 7.14662 7.45669 7.76643 8.39200 9.22787 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.003797 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.020584 B = 7372.976437 C = 8043.988388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.109 0.891 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.088 0.912 8 C -0.073 4.073 9 N -0.952 5.952 10 Si 0.984 3.016 11 H -0.268 1.268 12 H -0.298 1.298 13 H -0.277 1.277 14 C 0.157 3.843 15 C 0.137 3.863 16 H 0.055 0.945 17 N -0.697 5.697 18 C 0.561 3.439 19 O -0.585 6.585 20 C -0.351 4.351 21 C 0.222 3.778 22 N -0.458 5.458 23 C 0.041 3.959 24 C 0.169 3.831 25 C -0.301 4.301 26 C 0.374 3.626 27 O -0.573 6.573 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.243 0.757 34 H -0.002 1.002 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.210 0.790 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.229 0.771 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 27.914 10.996 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.127 0.873 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.265 4.265 9 N -0.601 5.601 10 Si 0.811 3.189 11 H -0.194 1.194 12 H -0.224 1.224 13 H -0.203 1.203 14 C 0.030 3.970 15 C 0.030 3.970 16 H 0.073 0.927 17 N -0.350 5.350 18 C 0.351 3.649 19 O -0.465 6.465 20 C -0.362 4.362 21 C 0.087 3.913 22 N -0.140 5.140 23 C -0.098 4.098 24 C 0.044 3.956 25 C -0.324 4.324 26 C 0.267 3.733 27 O -0.462 6.462 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.016 0.984 35 H 0.069 0.931 36 H 0.250 0.750 37 H 0.226 0.774 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.245 0.755 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.018 26.589 11.193 29.942 hybrid contribution 0.973 -1.398 -0.458 1.764 sum -7.045 25.191 10.735 28.275 Atomic orbital electron populations 1.21702 0.92185 1.01688 1.03178 1.22383 0.97284 0.99320 0.91830 0.87290 1.21625 0.88425 0.93352 0.95828 1.44693 1.32138 1.50922 1.07607 1.19495 1.06391 1.17476 0.93684 0.89390 1.25772 1.00585 1.02618 0.97510 1.70160 1.30107 1.47074 1.12763 0.85077 0.77764 0.78653 0.77399 1.19390 1.22444 1.20338 1.21849 0.92151 0.98142 0.84853 1.22119 0.97109 0.93020 0.84777 0.92705 1.45416 1.74602 1.11030 1.03952 1.18214 0.75838 0.87330 0.83514 1.90834 1.50928 1.18179 1.86560 1.22153 1.24117 0.94626 0.95294 1.22595 0.86006 0.88663 0.94035 1.43353 1.55374 1.11400 1.03918 1.23056 1.05990 0.72853 1.07874 1.22464 0.90036 0.95455 0.87661 1.22360 1.15289 0.94221 1.00557 1.19173 0.75637 0.89166 0.89336 1.90785 1.47191 1.20010 1.88226 0.91215 0.89779 0.94342 0.95576 0.94222 0.94757 0.98410 0.93091 0.75033 0.77351 0.88337 0.86716 0.85691 0.75467 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.16 71.98 0.66 -2.60 16 2 C -0.09 -2.83 3.20 -9.61 -0.03 -2.86 16 3 H 0.11 2.71 8.00 -2.38 -0.02 2.69 16 4 C 0.13 5.46 6.84 86.73 0.59 6.05 16 5 N -0.63 -34.30 3.39 -691.98 -2.35 -36.64 16 6 C -0.24 -14.33 10.27 84.03 0.86 -13.47 16 7 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 8 C -0.07 -4.44 5.49 84.86 0.47 -3.97 16 9 N -0.95 -62.77 10.09 21.65 0.22 -62.55 16 10 Si 0.98 48.74 29.55 68.60 2.03 50.77 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.16 8.55 5.58 86.85 0.48 9.04 16 15 C 0.14 5.77 2.87 46.38 0.13 5.91 16 16 H 0.05 2.76 7.44 -2.38 -0.02 2.74 16 17 N -0.70 -23.61 5.15 -439.35 -2.26 -25.87 16 18 C 0.56 23.70 7.77 86.62 0.67 24.38 16 19 O -0.59 -33.84 15.21 15.04 0.23 -33.61 16 20 C -0.35 -11.05 6.05 -18.63 -0.11 -11.16 16 21 C 0.22 3.09 9.80 84.25 0.83 3.91 16 22 N -0.46 -2.55 2.97 -547.49 -1.63 -4.17 16 23 C 0.04 -0.26 10.52 127.77 1.34 1.09 16 24 C 0.17 1.28 10.17 83.34 0.85 2.13 16 25 C -0.30 -6.45 10.01 22.34 0.22 -6.23 16 26 C 0.37 13.90 6.96 25.44 0.18 14.08 16 27 O -0.57 -29.80 16.41 13.54 0.22 -29.58 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.05 3.43 5.88 -2.39 -0.01 3.41 16 36 H 0.41 8.83 6.64 -92.71 -0.62 8.21 16 37 H 0.21 0.98 6.35 -2.91 -0.02 0.96 16 38 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.11 -1.06 7.96 -2.39 -0.02 -1.07 16 40 H 0.12 -1.41 7.96 -2.39 -0.02 -1.43 16 41 H 0.23 -1.09 7.97 -2.91 -0.02 -1.11 16 42 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -114.87 347.74 4.03 -110.84 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.42 Total: 4.54 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 7.15 Total: 26.28 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -6.02 Total: -129.24 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: 0.45 Total: -63.19 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -114.87 4.03 -110.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080102276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.767 kcal (2) G-P(sol) polarization free energy of solvation -114.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds