Wall clock time and date at job start Fri Apr 10 2020 17:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35750 * 117.00088 * 2 1 4 4 C 1.39205 * 120.81185 * 0.02562 * 3 2 1 5 5 C 1.38316 * 119.28844 * 179.97438 * 4 3 2 6 6 N 1.31611 * 120.96599 * 359.97438 * 5 4 3 7 7 C 1.32793 * 121.78547 * 0.02831 * 6 5 4 8 8 C 1.48190 * 119.69878 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99833 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99986 * 359.97438 * 8 7 6 11 11 C 1.46491 * 120.00103 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.64157 * 31.85277 * 11 10 8 13 13 C 1.54330 * 110.87204 * 268.60794 * 11 10 8 14 14 N 1.47022 * 107.27093 * 219.37277 * 13 11 10 15 15 C 1.36938 * 125.64738 * 178.90551 * 14 13 11 16 16 H 1.08000 * 119.99838 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99820 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46876 * 60.00007 * 19 17 15 21 21 H 1.48503 * 109.46776 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47278 * 299.99954 * 19 17 15 23 23 C 1.47523 * 108.71559 * 358.93837 * 14 13 11 24 24 C 1.54909 * 104.78433 * 24.12363 * 23 14 13 25 25 H 1.09002 * 111.00594 * 81.08595 * 24 23 14 26 26 C 1.53004 * 111.00603 * 204.90137 * 24 23 14 27 27 C 1.39101 * 120.60483 * 0.26506 * 7 6 5 28 28 H 1.09004 * 109.47013 * 59.99985 * 1 2 3 29 29 H 1.08993 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47087 * 299.99872 * 1 2 3 31 31 H 1.08000 * 120.36271 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.51778 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99615 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.87833 * 338.79039 * 13 11 10 35 35 H 1.08997 * 109.88363 * 99.79896 * 13 11 10 36 36 H 0.97003 * 120.00159 * 180.02562 * 18 17 15 37 37 H 1.09001 * 110.37251 * 265.30968 * 23 14 13 38 38 H 1.09004 * 110.41044 * 142.95250 * 23 14 13 39 39 H 1.08994 * 109.46941 * 175.41948 * 26 24 23 40 40 H 1.09004 * 109.46932 * 295.41783 * 26 24 23 41 41 H 1.09002 * 109.47107 * 55.41072 * 26 24 23 42 42 H 1.08003 * 120.51078 * 179.73299 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3876 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2792 3.6590 0.0016 7 6 4.0262 2.5610 0.0010 8 6 5.5034 2.6780 0.0011 9 8 6.1922 1.6769 0.0010 10 7 6.0831 3.8948 0.0011 11 6 7.5434 4.0105 0.0006 12 1 7.9947 3.1772 -0.5381 13 6 8.0893 4.0885 1.4420 14 7 9.1849 5.0689 1.4413 15 6 9.9201 5.4449 2.5337 16 1 10.7073 6.1768 2.4289 17 6 9.6536 4.8852 3.7757 18 7 8.6946 3.9928 3.9033 19 14 10.6570 5.3975 5.2658 20 1 10.5013 6.8573 5.4892 21 1 10.1779 4.6601 6.4624 22 1 12.0890 5.0827 5.0303 23 6 9.3607 5.5814 0.0692 24 6 7.9866 5.3651 -0.6127 25 1 7.2897 6.1603 -0.3482 26 6 8.1390 5.2559 -2.1312 27 6 3.4346 1.3021 -0.0056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2244 2.3532 0.0014 32 1 1.3927 4.5192 0.0019 33 1 5.5332 4.6939 0.0007 34 1 7.3005 4.4145 2.1199 35 1 8.4628 3.1120 1.7503 36 1 8.5081 3.6020 4.7713 37 1 10.1350 5.0170 -0.4504 38 1 9.6116 6.6420 0.0887 39 1 7.1722 5.0235 -2.5775 40 1 8.5046 6.2028 -2.5287 41 1 8.8490 4.4637 -2.3691 42 1 4.0436 0.4101 -0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080246814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:08 Heat of formation + Delta-G solvation = -6.300998 kcal Electronic energy + Delta-G solvation = -24767.156982 eV Core-core repulsion = 21134.649827 eV Total energy + Delta-G solvation = -3632.507155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95185 -39.46403 -38.30071 -37.30108 -33.89203 -32.64521 -31.77176 -31.47833 -30.30887 -28.11247 -27.66853 -25.60116 -24.51741 -23.54958 -23.18319 -20.87109 -19.98832 -19.75640 -18.53233 -17.45882 -16.85047 -16.31364 -16.22882 -15.91760 -15.65728 -15.03071 -14.78211 -14.61044 -14.15194 -13.95404 -13.72077 -13.35414 -13.10735 -12.79832 -12.71624 -12.55287 -11.98074 -11.86974 -11.66310 -11.62596 -11.27740 -10.96747 -10.71577 -10.59343 -10.37782 -10.12043 -9.91632 -9.86996 -9.65803 -9.52430 -9.43094 -9.15450 -8.56511 -8.39724 -6.77636 -5.63184 -2.98425 0.54017 1.09622 2.68888 2.90356 3.44891 3.47272 3.49568 3.51151 3.87791 4.16085 4.34409 4.55283 4.57437 4.71194 4.72768 4.91411 5.05411 5.08465 5.20757 5.38240 5.42784 5.51837 5.58000 5.61130 5.78779 5.82310 6.04307 6.06452 6.18530 6.22348 6.26947 6.41114 6.55342 6.68588 6.81882 6.86175 7.00171 7.54277 7.62876 7.70075 7.90691 8.00511 8.31535 8.55482 9.27373 9.88211 10.53451 11.47385 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.003423 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.844647 B = 8177.020335 C = 9140.766922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.249 4.249 5 C 0.136 3.864 6 N -0.481 5.481 7 C 0.126 3.874 8 C 0.568 3.432 9 O -0.529 6.529 10 N -0.687 5.687 11 C 0.117 3.883 12 H 0.091 0.909 13 C 0.173 3.827 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.078 0.922 26 C -0.137 4.137 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.407 0.593 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.253 0.747 37 H 0.023 0.977 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -2.510 -11.647 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.270 4.270 5 C -0.023 4.023 6 N -0.196 5.196 7 C -0.011 4.011 8 C 0.351 3.649 9 O -0.405 6.405 10 N -0.336 5.336 11 C 0.013 3.987 12 H 0.109 0.891 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.014 3.986 24 C -0.133 4.133 25 H 0.097 0.903 26 C -0.195 4.195 27 C -0.167 4.167 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.243 0.757 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.339 -2.718 -11.400 20.928 hybrid contribution -0.665 -0.093 0.969 1.179 sum -18.004 -2.811 -10.432 20.997 Atomic orbital electron populations 1.23158 0.77686 1.04494 1.01667 1.86105 1.21916 1.26047 1.87832 1.19200 0.92128 0.84787 0.93097 1.22370 1.01658 0.93251 1.09722 1.22576 0.89735 0.97130 0.92895 1.67634 1.07256 1.31342 1.13350 1.21131 0.94726 0.88482 0.96810 1.17703 0.85349 0.84303 0.77555 1.90801 1.63140 1.36530 1.50033 1.45745 1.08019 1.07737 1.72120 1.22593 0.78173 0.97532 1.00447 0.89138 1.21471 0.90787 0.94067 0.88926 1.44415 1.38780 1.47185 1.02876 1.18999 1.11671 1.19651 0.85529 0.90374 1.24829 0.98881 0.99084 0.97656 1.69962 1.32426 1.31094 1.23114 0.86200 0.79456 0.77710 0.82370 1.21229 1.21652 1.21175 1.21607 0.92967 0.97370 0.86612 1.22622 0.99434 0.96784 0.94509 0.90321 1.21697 1.01240 1.01471 0.95077 1.21430 0.91915 0.99969 1.03356 0.92298 0.87761 0.92217 0.84035 0.81818 0.75700 0.93072 0.93345 0.93705 0.95981 0.93940 0.93101 0.92758 0.92613 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -3.18 10.51 -18.96 -0.20 -3.38 16 3 C 0.16 1.86 6.73 -38.85 -0.26 1.60 16 4 C -0.25 -2.29 9.11 -39.19 -0.36 -2.64 16 5 C 0.14 1.38 11.17 -17.62 -0.20 1.19 16 6 N -0.48 -6.57 9.54 -9.87 -0.09 -6.66 16 7 C 0.13 1.96 6.75 -83.04 -0.56 1.40 16 8 C 0.57 10.53 7.81 -12.17 -0.10 10.44 16 9 O -0.53 -11.44 15.96 5.35 0.09 -11.35 16 10 N -0.69 -12.27 5.10 -52.86 -0.27 -12.54 16 11 C 0.12 2.34 2.78 -66.10 -0.18 2.16 16 12 H 0.09 1.89 7.44 -51.93 -0.39 1.50 16 13 C 0.17 4.43 5.13 -3.06 -0.02 4.41 16 14 N -0.61 -15.88 3.40 -169.99 -0.58 -16.45 16 15 C -0.23 -6.56 10.28 -15.06 -0.15 -6.71 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -28.03 10.31 55.49 0.57 -27.46 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.14 2.93 6.71 -2.47 -0.02 2.91 16 24 C -0.11 -1.98 3.26 -88.47 -0.29 -2.26 16 25 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 26 C -0.14 -1.91 9.29 37.16 0.35 -1.57 16 27 C -0.14 -2.06 9.60 -38.89 -0.37 -2.43 16 28 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 31 H 0.14 0.81 6.45 -52.49 -0.34 0.47 16 32 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.41 6.53 7.89 -40.82 -0.32 6.21 16 34 H 0.05 1.44 7.27 -51.93 -0.38 1.07 16 35 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.02 0.46 8.03 -51.93 -0.42 0.04 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 42 H 0.16 2.27 7.64 -52.48 -0.40 1.87 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -34.60 350.20 -7.42 -42.02 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.93 Total: 3.65 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.26 Total: 9.30 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.37 Total: -63.12 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.11 Total: -14.74 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.60 -7.42 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080246814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds